SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02207
Pre Gene Modal
BGIBMGA003036
Annotation
PREDICTED:_probable_G-protein_coupled_receptor_158_isoform_X2_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 1.881
 

Sequence

CDS
ATGAGGGCGCGGTGGGCGGCGTGGGCCGTGGCGTGGTGCGCGTGCACCGCCGCCGCGCCATTCGAGCCGCGCGCCTCGCACTCCTCCACTATGCCCTCACCTGTCTGCGATCCACTGCTACTGCACAATCCACCTCCTTTGCCCCTGAATGCACGAGAGCACGAAGCTGCCGTTGTTCACACAGCGCGAGCTCTTGCTGATTTGGTAGAGAAGGGGATAGCAGACGAGGCGCGTGCGACTGCCTTAGCCCGCGCTGTCGCACGCGCTCCGCTCTCGCCGATGCCCGCTGCTGTCGCGCTTGGAGCCCCTCAACTGCATCTCGGAGTACTATACGTCTCGGAACCTTCTCGTCTTATAATATTTCAACAGAACAATTCAGCTACATTACGACAATTCTGGCGTACATTGGCTTCTGCTTGGAATGCAACCAGTGTTGTATGGTCGAACGCTTGGTTTTCTTGTGAAAAAGACGAAGAAGGTTGGTGGGGTGGGATTGCTGCGGCACGAGGCACTGGTCCCACACGTGCAGCAGCTGCAATATTTCGACGTTGGTCGTCACTGCCATGTGAAGAGGCAATGCACGATTGGTTAGGTGAATTTCCGCGATGTGATCCCGTCACTACCGAGTGTGAGGCGTCCAGGGCTCTAAGAGACGGTGAAAGAAAATTAGAGTACAACTGTAAATGTCGACCAGGACATTGGAGTCAGTATGGTGGTGGATGGGTAAACGGCGACTCTTTGGAGCGAAATAATAGGAATCCTTTAACCTGTACCCCATGCGGAATGGGAAGTAGCGCCACCGCTTGTCTTGCTGATGTCTATCGCGTAGGACTACTGGCAGCTAACTTAGCTGGAATGCTATTGTGTGTTGTCATCGGTCTTATTATATTCAGGAAGAGAAAATGCAAGGCGGTTGCCATGGGAATGTGGACTGTATTGGAAGTTGTGTTATTCGGCGCTCTATTAATGTACGCCTCTGCTGCGTCACAGTACATTTCGGTGCCGAAATGGAGGTGTATAGCGGGTGCCTGGCTGCGGGAGCTCGGATTCGTGGCCTGCTATGGATCCGTTGTTTTACGATTATGGGTTTTACTGGCAGAATTTCGTACCCGGAAAGCACACAGGTGGACGCCAAAAGATTCAGAGGTGCTTCGCGTAGTTGGCGCGATGGTACTTGGTGCCGGGTGTTATCTTGCAGCATTCACAGCAACAGCGGCCTGTGAAGAAGACATCGGTGGTTGTGCTAGAGCAGCATGGCACCACGTTACCGGCGCTGCTGAAATCCTACTGCTTCTCGCCGGTATTAGGATCGCTTACGCTGCTAGAAACGCCAATGTTCCGTTTCAGGAGCGTGGGTTGTTGTCAGCGGCGCTGTGGGCGGAGGCGGCTTGCGGCGTGTGGTGGCGTGGCGTGGCGTGGGTCGCCAACGACGCGGCCCCAGAGCGCTGGCCCGTGGCTGCCGTAGCGCGAGCACATCTCTCGTCAGGGGCTGCGCTCGCCTGTGTGCTGGCCCCACGGCTCTGGCACGGCTATCGAGCCAGATCATTAGCTCAAGAGGTTTCTCGTCGAGGGCCCGCAGAAGGTTTTGGCGCAGAAGGTGAAGAAGAGCCCACTTCAGAAGAAGTAAGAGCGGAATTAAAAAGGCTGTACGTCCAACTGGAGATCCTTCGTAACAAGACAATCAGAAGAGATAATCCTCACATCAGTAAAAGACGAGGAGGTCGGAAACCGCCTCATAGACGATTTTCATTACAGGCTCTGCAAGCTCGTCGCGGTGGGAAGGGCAAGCCCAGTGGTGGCGCCAGCGTGGTGGAAGCGAGCGAAGCAGGGGATGCATCGCGGACTCCCGAGGACTCTGTCTGCTCGGTGGAGGGACCCTCACACTACACCGATGGCGACACGCAGGCGTGA
Protein
MRARWAAWAVAWCACTAAAPFEPRASHSSTMPSPVCDPLLLHNPPPLPLNAREHEAAVVHTARALADLVEKGIADEARATALARAVARAPLSPMPAAVALGAPQLHLGVLYVSEPSRLIIFQQNNSATLRQFWRTLASAWNATSVVWSNAWFSCEKDEEGWWGGIAAARGTGPTRAAAAIFRRWSSLPCEEAMHDWLGEFPRCDPVTTECEASRALRDGERKLEYNCKCRPGHWSQYGGGWVNGDSLERNNRNPLTCTPCGMGSSATACLADVYRVGLLAANLAGMLLCVVIGLIIFRKRKCKAVAMGMWTVLEVVLFGALLMYASAASQYISVPKWRCIAGAWLRELGFVACYGSVVLRLWVLLAEFRTRKAHRWTPKDSEVLRVVGAMVLGAGCYLAAFTATAACEEDIGGCARAAWHHVTGAAEILLLLAGIRIAYAARNANVPFQERGLLSAALWAEAACGVWWRGVAWVANDAAPERWPVAAVARAHLSSGAALACVLAPRLWHGYRARSLAQEVSRRGPAEGFGAEGEEEPTSEEVRAELKRLYVQLEILRNKTIRRDNPHISKRRGGRKPPHRRFSLQALQARRGGKGKPSGGASVVEASEAGDASRTPEDSVCSVEGPSHYTDGDTQA

Summary

EMBL
BABH01010313    ODYU01001971    SOQ38903.1    AGBW02008931    OWR52150.1    KQ460779    + More
KPJ12241.1    KQ459598    KPI94626.1    CH480820    EDW54283.1    CM002910    KMY88141.1    CH954177    KQS70124.1    CM000361    EDX03755.1    CM000157    EDW87686.1    AE014134    AAX52647.1    KMY88146.1    AGB92592.1    KQS70127.1    KRJ97307.1    CH902624    EDV33258.1    KPU74369.1    EDV57780.2    KMY88142.1    KMY88143.1    KMY88145.1    KMY88147.1    AFH03557.1    KRJ97308.1    KMY88148.1    KQS70125.1    CH940661    KRF85659.1    KRJ97305.1    KPU74368.1    KPU74371.1    KPU74370.1    KRF85660.1    CH916372    EDV99087.1    CH479180    EDW29026.1    EDW71314.2    OUUW01000004    SPP79141.1    CH963920    EDW77609.2    CH933807    EDW13256.1    JXJN01001583    KRF85658.1    CH379060    EAL33798.3    KRG03668.1    CP012523    ALC38427.1    ALC37936.1    KRG03663.1    KRG03664.1    KRG03665.1    KRG03667.1    ADMH02000283    ETN67124.1    KRG03666.1    CVRI01000054    CRL00772.1    UFQT01000775    SSX27133.1    AFH03558.1    GEZM01073528    JAV65026.1    CRL00771.1    SSX27132.1    GEBQ01009836    JAT30141.1    KQ971343    EFA03503.2    GEDC01021627    JAS15671.1    KYB27176.1    AJVK01000779    AJVK01000780    AJVK01000781    AJVK01000782    AJVK01000783    GEDC01000144    JAS37154.1    KQS70126.1    KMY88144.1    KRJ97306.1    AAF50967.3    GDHF01008857    JAI43457.1    JRES01000536    KNC30354.1    GBXI01014285    JAD00007.1    JH430149    GAMC01017523    JAB89032.1    AXCN02000655    AXCN02000656   
Pfam
PF00003   7tm_3
Interpro
IPR017978   GPCR_3_C        + More
IPR009030   Growth_fac_rcpt_cys_sf       
SUPFAM
SSF57184   SSF57184       

Ontologies

Topology

SignalP
Position:   1 - 18,         Likelihood:  0.943967
 
 
Length:
636
Number of predicted TMHs:
5
Exp number of AAs in TMHs:
135.25571
Exp number, first 60 AAs:
1.19719
Total prob of N-in:
0.09056
outside
1  -  275
TMhelix
276  -  298
inside
299  -  304
TMhelix
305  -  327
outside
328  -  341
TMhelix
342  -  364
inside
365  -  384
TMhelix
385  -  407
outside
408  -  416
TMhelix
417  -  439
inside
440  -  636
 
 

Population Genetic Test Statistics

Pi
36.022828
Theta
23.784058
Tajima's D
-1.009516
CLR
128.234841
CSRT
0.133543322833858
Interpretation
Uncertain
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