Gene

KWMTBOMO02204

Pre Gene Modal

BGIBMGA003123

Annotation

PREDICTED:_protein_FAM92A1_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr4(-):13854416-13864626      View in EpiBrowser

Full name

Protein FAM92A       + More
Protein FAM92A-A      
Protein FAM92A-B      

Location in the cell

Nuclear   Reliability : 4.441

CDS

ATGTTTAGAGGCGATAGTTCACATTCTTTAAGTTATGAACAACAAGCAAAGTTTATAAATGACCGTATTACTAGTGTTGAAAAAAATTTTGGTGAACTGTGTGTGGCATTTGGTAATTACACACGAAAAACTGCCAGTACGGGGTTGGACAATCTTTCGGTCACCCTGACGGCTTTAGAAGAATATCGAAATTGTGAAGTACAACGGCTAGAAGCTAAGGTCATAGGTGAACTGTCGCAATATGATACTATATGTAAACATGCCAGAGAAGAAGTAAAACACGCAATGAATGTTAGAGACAAAGAGCTTGCTCGTAAGAAAGTCTTGGATAAAGCTAGGGAACGACAACCATTTAATAGACAGCAAGTGACTTACGCGGAATCGGAGTTTATGAAAACGTCAGCGGAAATGTCACGGAGTGCCAAAAGCCTGAGTGAACAGACAGAGTTCTTTGAAAAACGTAAACTACAGCAACTAAAGAACTTACTGTCGGATTTTGTTACGATTGAAATGGCATTCCATGCTAAGGCGGTGGAACTGCTCACCGTGGGCTATCAACAAATAGATGAAATTAATGATAAAGCAGATTTAGAGAATTTTAGAAGAAAACTGCGATCTCCGGAGAAACAAGTCAGTACCGGTATATCAGCAAGATCATCATCACTGGCATCACTAATGACGCATTCACCAGTTAATAACGAAGATCCGGCGGCTGTGCGAAAATTACGTACTCCAGAGAAATCTGGTGTTACGCGGTCTAGTTCTTTAGCAGCGCTCATGAACCATTCGCCTAGTAAAGATGAAGATGAAACAACGGGATCCAGTGAATCTTGCAGTGAAGAATCGTCTGAAGAAACAGAGTCGCGTTAA

Protein

MFRGDSSHSLSYEQQAKFINDRITSVEKNFGELCVAFGNYTRKTASTGLDNLSVTLTALEEYRNCEVQRLEAKVIGELSQYDTICKHAREEVKHAMNVRDKELARKKVLDKARERQPFNRQQVTYAESEFMKTSAEMSRSAKSLSEQTEFFEKRKLQQLKNLLSDFVTIEMAFHAKAVELLTVGYQQIDEINDKADLENFRRKLRSPEKQVSTGISARSSSLASLMTHSPVNNEDPAAVRKLRTPEKSGVTRSSSLAALMNHSPSKDEDETTGSSESCSEESSEETESR

Description

May play a role in ciliogenesis.

Similarity

Belongs to the FAM92 family.

Keywords

Coiled coil   Complete proteome   Cytoplasm   Cytoskeleton   Reference proteome  

Feature

chain  Protein FAM92A

Uniprot

A0A2A4J9W7   H9J0T6   A0A2H1VJB9   A0A194PMU4   A0A194R370   A0A212FFB9   + More
E2C5D3   A0A151XEN4   A0A195CN30   A0A154PGF0   F4WZ37   A0A2J7RL70   A0A2J7RL69   E9IYU8   A0A2A3E560   A0A026VYG2   A0A158NDN5   A0A0J7KHX9   A0A2J7RL66   A0A088A2N4   A0A067QPF4   A0A2J7RL64   A0A195DBD2   A0A2J7RL78   A0A195BQB4   A0A195F4X8   A0A0L7LAE8   A0A1B6DAS4   E2A0K4   A0A0M8ZZG0   A0A1B6CT49   A0A139WGZ1   A0A3L8DE73   D6WM63   A0A3L8D520   B0WWM5   A0A0B6ZNI5   A0A1B6ESM4   J3JTV0   Q17FZ9   Q16SM4   A0A232FA30   C3ZB27   W4ZFD6   A0A1S4F4C5   A0A182G2C0   A0A1S4FQM4   A0A182RAS2   A0A210QQ56   A0A2T7NJZ0   A0A182R180   A0A182K3S3   A0A182NUI9   Q1LU86   V3ZLA6   A0A182KTM7   Q5TP15   A0A2D0S4H6   K7IP44   W5UKA6   A0A2I0MXN9   A0A182HRK2   A0A182WGU9   A0A182X798   G1NHC4   A0A2G8LNV9   A0A182UB75   A0A1B6LIZ0   A0A151MY70   W5JA42   A0A1V4KH21   C3KJD7   A0A182MV57   Q2VR06   E9QCT2   A0A091GN72   A0A3N0XZF1   A0A182YDN1   A0A1U8CXD5   A0A1A7XMB1   A0A091J4I1   A0A1W4Y2B7   Q6GN09   A0A1W4XSM9   H3AFV3   A0A2D4LMU3   F7CJ83   A0A091WQ24   M3XHV0   A0A250XXP4   A0A182TB87   G3NN11   A0A099ZTD6   A0A091J6X2   A0A182UP43   A0A093C870   A0A3B3WUK3   G3NN04  

Pubmed

19121390    26354079    22118469    20798317    21719571    21282665    + More
24508170    21347285    24845553    26227816    18362917    19820115    30249741    22516182    17510324    28648823    18563158    26483478    28812685    23594743    23254933    20966253    12364791    14747013    17210077    20075255    23127152    23371554    20838655    29023486    22293439    20920257    23761445    27762356    25244985    9215903    20431018    28087693   

EMBL

NWSH01002294    PCG68639.1    BABH01010319    BABH01010320    BABH01010321    ODYU01002883    + More
SOQ40918.1    KQ459598    KPI94637.1    KQ460779    KPJ12253.1    AGBW02008830    OWR52431.1    GL452770    EFN76866.1    KQ982254    KYQ58791.1    KQ977600    KYN01494.1    KQ434899    KZC10935.1    GL888465    EGI60540.1    NEVH01002699    PNF41582.1    PNF41586.1    GL767051    EFZ14263.1    KZ288367    PBC26828.1    KK107578    EZA48690.1    ADTU01012728    LBMM01007361    KMQ89806.1    PNF41584.1    KK853845    KDQ71561.1    PNF41585.1    KQ981082    KYN09724.1    PNF41583.1    KQ976424    KYM88323.1    KQ981820    KYN35134.1    JTDY01001995    KOB72374.1    GEDC01014504    JAS22794.1    GL435626    EFN72907.1    KQ435793    KOX74255.1    GEDC01020656    JAS16642.1    KQ971343    KYB27270.1    QOIP01000009    RLU18453.1    RLU18807.1    EFA03352.2    QOIP01000013    RLU15324.1    DS232149    EDS36117.1    HACG01023057    CEK69922.1    GECZ01028764    JAS41005.1    BT126659    AEE61622.1    CH477267    EAT45471.1    CH477671    EAT37472.1    NNAY01000623    OXU27330.1    GG666603    EEN50064.1    AAGJ04050040    JXUM01139033    KQ568831    KXJ68870.1    NEDP02002420    OWF50876.1    PZQS01000012    PVD21476.1    AXCN02002061    BX957357    BC078261    KB203331    ESO85072.1    AAAB01008980    EAL39225.3    JT416747    AHH42135.1    AKCR02000001    PKK34446.1    APCN01001715    MRZV01000021    PIK61949.1    GEBQ01016320    JAT23657.1    AKHW03004704    KYO29450.1    ADMH02001853    ETN60861.1    LSYS01003169    OPJ83653.1    BT083052    ACQ58759.1    AXCM01000820    AY855078    CM004477    KL506549    KFO85041.1    RJVU01057109    ROK35819.1    HADW01017579    HADX01008818    SBP18979.1    KK501492    KFP15502.1    CM004476    BC073713    AFYH01194852    AFYH01194853    AFYH01194854    AFYH01194855    AFYH01194856    AFYH01194857    IACM01029290    LAB22198.1    AAMC01033227    AAMC01033228    KK736152    KFR17739.1    GFFV01003788    JAV36157.1    KL896990    KGL84050.1    KL218705    KFP07501.1    KL241212    KFV12115.1   

Proteomes

UP000218220    UP000005204    UP000053268    UP000053240    UP000007151    UP000008237    + More
UP000075809    UP000078542    UP000076502    UP000007755    UP000235965    UP000242457    UP000053097    UP000005205    UP000036403    UP000005203    UP000027135    UP000078492    UP000078540    UP000078541    UP000037510    UP000000311    UP000053105    UP000007266    UP000279307    UP000002320    UP000008820    UP000215335    UP000001554    UP000007110    UP000069940    UP000249989    UP000075900    UP000242188    UP000245119    UP000075886    UP000075881    UP000075884    UP000000437    UP000030746    UP000075882    UP000007062    UP000221080    UP000002358    UP000053872    UP000075840    UP000075920    UP000076407    UP000001645    UP000230750    UP000075902    UP000050525    UP000000673    UP000190648    UP000075883    UP000186698    UP000076408    UP000189705    UP000053119    UP000192224    UP000008672    UP000008143    UP000053605    UP000075901    UP000007635    UP000053641    UP000054308    UP000075903    UP000261480   

PRIDE

H9J0T6   

Pfam

PF06730   FAM92        + More
PF00415   RCC1
PF13181   TPR_8
PF04049   ANAPC8

Interpro

IPR009602   FAM92        + More
IPR027267   AH/BAR_dom_sf       
IPR035590   BAR_FAM92       
IPR000408   Reg_chr_condens       
IPR009091   RCC1/BLIP-II       
IPR019734   TPR_repeat       
IPR007192   APC8       
IPR011990   TPR-like_helical_dom_sf       
IPR013026   TPR-contain_dom       

SUPFAM

SSF103657   SSF103657        + More
SSF50985   SSF50985       
SSF48452   SSF48452       

Gene 3D

1.20.1270.60     2.130.10.30     1.25.40.10    

CDD

cd07598  BAR_FAM92

ProteinModelPortal

A0A2A4J9W7   H9J0T6   A0A2H1VJB9   A0A194PMU4   A0A194R370   A0A212FFB9   + More
E2C5D3   A0A151XEN4   A0A195CN30   A0A154PGF0   F4WZ37   A0A2J7RL70   A0A2J7RL69   E9IYU8   A0A2A3E560   A0A026VYG2   A0A158NDN5   A0A0J7KHX9   A0A2J7RL66   A0A088A2N4   A0A067QPF4   A0A2J7RL64   A0A195DBD2   A0A2J7RL78   A0A195BQB4   A0A195F4X8   A0A0L7LAE8   A0A1B6DAS4   E2A0K4   A0A0M8ZZG0   A0A1B6CT49   A0A139WGZ1   A0A3L8DE73   D6WM63   A0A3L8D520   B0WWM5   A0A0B6ZNI5   A0A1B6ESM4   J3JTV0   Q17FZ9   Q16SM4   A0A232FA30   C3ZB27   W4ZFD6   A0A1S4F4C5   A0A182G2C0   A0A1S4FQM4   A0A182RAS2   A0A210QQ56   A0A2T7NJZ0   A0A182R180   A0A182K3S3   A0A182NUI9   Q1LU86   V3ZLA6   A0A182KTM7   Q5TP15   A0A2D0S4H6   K7IP44   W5UKA6   A0A2I0MXN9   A0A182HRK2   A0A182WGU9   A0A182X798   G1NHC4   A0A2G8LNV9   A0A182UB75   A0A1B6LIZ0   A0A151MY70   W5JA42   A0A1V4KH21   C3KJD7   A0A182MV57   Q2VR06   E9QCT2   A0A091GN72   A0A3N0XZF1   A0A182YDN1   A0A1U8CXD5   A0A1A7XMB1   A0A091J4I1   A0A1W4Y2B7   Q6GN09   A0A1W4XSM9   H3AFV3   A0A2D4LMU3   F7CJ83   A0A091WQ24   M3XHV0   A0A250XXP4   A0A182TB87   G3NN11   A0A099ZTD6   A0A091J6X2   A0A182UP43   A0A093C870   A0A3B3WUK3   G3NN04  

KEGG

101740882    no KO assigned | (RefSeq) protein FAM92A1

GO

GO:0030071   GO:0005680   GO:0060271   GO:0005814   GO:0097546   GO:0035108   GO:0036064  

PANTHER

PTHR21223  

Subcellular location

Cytoplasm  
Cytoskeleton  
Microtubule organizing center  
Centrosome  
Centriole  

Length:

289

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00131

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01226

outside

1  -  289

 

 

Pi

32.356565

Theta

194.404192

Tajima's D

-0.710064

CLR

154.982279

CSRT

0.190490475476226

Interpretation

Uncertain