Silkworm Genome Informatics Database

Gene

KWMTBOMO02201

Pre Gene Modal

BGIBMGA003033

Annotation

PREDICTED:_arf-GAP_domain_and_FG_repeat-containing_protein_1_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr4(+):13831817-13835199 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.11

CDS

ATGGCTGCGAACCGCCGCAAGCAAGACGATAAAAATTTAGAAATCTTACGTGAACTAATTTCTCTAAATGGAAACAAATATTGCTTAGACTGTAACCAAAGAGGACCTACTTATGTGAATACAACAATAGGATCATTTGTTTGTTCAAAATGTTCAGGAATGCTACGAGGCCTTACGCCCCCACATCGCGTGAAATCAATTTCAATGGCTACTTTTACCCCTGAGGAGATAGAGTTTATTAAATCAAGAGGGAACGACTACTGTAGACTTGTTTGGCTAGGACTTTACGACGGTGAAAGTATAAATTTTACTGATGAGCAGAGCGTTAGAGATTTTATGTTGGATAAATATGAGAAGAAACGTTATTATTTAGATGCGCCAACAAACAATTCAGTAGTCAATGGAAATGTATCAACTAAGAATTATAAGTCAAAAGCCAAGGCTGGAAATGTAGCAGCCTCTGTAACACCTCTGATATCGATTTCGCCGCAATCTTCGAAAAATGCATCCAATAAGAATGCAATTCAAACTGCGAAATTAGTGAATAATTTACTTCCAACAACTGGAACTGATGTTAGTCAGAGAATATCACGGCCAGTGAGTAGTGGGCAGCCCCTCCTTAATTCTGCAAGTGCGCTCACAGTTGCGGCTCCAACTGCTACAGTCGCACCTCCGGTACCTGATTTCCCTGTTGATTTTTCTACTGCGAATATTTACAACAGTAGTCAGTATAACAATAATATGAATAATAATTTTGTAAGTCAGTCATCTACAGCCACATCAACATTGAATAATATTTTCAATACATCCTCATCAACAGGAAATGATCGTTATGCGGCATTGGCTGTTTTAGATTCAGCATTAAGGCAACAAAATATGAAACAATTAGAAGAAAATAATGGTATTAGCAACAAGAATCCATTTCAAAGTCCTTCAACACATGATGTTTTTGCCAACAAAAACCCATTCTTCAATGAAGGATGGAGTAAACCTGCTGCACCAGTCCCAGCCAACCCATTTATGCCTGCGACAAACAACGGCGGCTTCATAAATTCTAAGAATCCATTTCTTTGA

Protein

MAANRRKQDDKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGLTPPHRVKSISMATFTPEEIEFIKSRGNDYCRLVWLGLYDGESINFTDEQSVRDFMLDKYEKKRYYLDAPTNNSVVNGNVSTKNYKSKAKAGNVAASVTPLISISPQSSKNASNKNAIQTAKLVNNLLPTTGTDVSQRISRPVSSGQPLLNSASALTVAAPTATVAPPVPDFPVDFSTANIYNSSQYNNNMNNNFVSQSSTATSTLNNIFNTSSSTGNDRYAALAVLDSALRQQNMKQLEENNGISNKNPFQSPSTHDVFANKNPFFNEGWSKPAAPVPANPFMPATNNGGFINSKNPFL

Uniprot

A0A2A4JB56 A0A1E1WMG4 A0A2A4J9L5 A0A194PPH9 A0A194R4T8 A0A212FFC1 + More

Pubmed

26354079 22118469

EMBL

NWSH01002294 PCG68652.1 GDQN01003003 JAT88051.1 PCG68651.1 KQ459598 + More
KPI94639.1 KQ460779 KPJ12255.1 AGBW02008830 OWR52434.1

Proteomes

UP000218220 UP000053268 UP000053240 UP000007151

Pfam

PF01412 ArfGap

Interpro

IPR038508   ArfGAP_dom_sf        + More
IPR001164   ArfGAP_dom
IPR037278   ARFGAP/RecO

SUPFAM

SSF57863 SSF57863

Gene 3D

3.30.40.160

ProteinModelPortal

A0A2A4JB56 A0A1E1WMG4 A0A2A4J9L5 A0A194PPH9 A0A194R4T8 A0A212FFC1 + More

PDB

2OLM E-value=2.90963e-40, Score=415

KEGG

101741501 K15044 Arf-GAP domain and FG repeats-containing protein 1 | (RefSeq) arf-GAP domain and FG repeat-co

GO

GO:0046872 GO:0005096 GO:0006529 GO:0005488 GO:0016020 GO:0005839 GO:0051603 GO:0008483 GO:0006418 GO:0016507 GO:0048384

Length:

357

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.15616

Exp number, first 60 AAs:

0.11272

Total prob of N-in:

0.13485

outside

1 - 357

Pi

168.359081

Theta

161.396947

Tajima's D

0.132242

CLR

1.149111

CSRT

0.40357982100895

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics