Gene

KWMTBOMO02199

Pre Gene Modal

BGIBMGA003125

Annotation

PREDICTED:_regulator_of_nonsense_transcripts_2_[Amyelois_transitella]

Location

Bomo_Chr4(-):13795864-13810256      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.634

CDS

ATGACTGCCACCAACAACGATGAGGCAAACGAAACACCTATTGAAGAACCGCTTAAAGATTTAGAAGAAAATGAGAAAGCGGCTCTCGAAGAGTATACAGCTAACTTGGAAGCCAGATTGAAACAAAAATATGAAATACGTAATCAAAATTTGAATTGCTCTCGACCACCAGAAAATTATTTTTCCAAGCTAGATTCAGGTTTGAAAAAGAATACCACATTTGTAAAAAAACTAAAATCATTTAGTGCTTCTCAGCTGGATGTACTTTTGAAAGATTTTGCAACATTAAATCTTACAAAATATATATCAGAAGTGGCTGCTGCAATAGCAGAAGCAAAATTGAAAATGTCTGATATTCCTGCTGCTATAACTCTATGTTCAGTTCTTCATCGTACTTACGCTGATTTTTCATCTAACTTTTTTGAAAACTGGCAAAAGATTTTAACATTCAAAGCGACTGATAAAATAACAAATTCATCAAAACTGCGGGTGGATATAAGATTTTATGCAGAATTAGTGGCTGTCGGTATTTTTATGAATAAAACTGGATTGCCTTTGCTGGGTAATGTATTAACTGTTCTAATAAACATGGACAAAGAAGAGCATAACAATATACCAATTTTGTTATCATTTTGCAAACACTGTGGTGATGATTATGCTGGACTTATGCCTAGAAAAATACGAGAAGCTTCTGAGAAACATAATATTCCTGTTCCTCGAAATACATTTTTACCGGCAGAGAAACAAACAGCAGTTAGAACTCTCTTGAAAGATTACTTTCTTTCACTAACCAAACATCTGCTGGCGGAAAGAGCTCAACTTCAAGCTCTGCATGCAGCAAATCAGAGGACTCTGCACACCAGAGGAGAACTCTCACAAGAAAGAAAAGAACAATTAGAACAACATCAAACAACTTATGACAAGCTACTAGTAAATGCACAAAATTTTGCTGAAGTTCTTGGAGAAGATTTGGGTGAAGCTGGTGAACCTCCCACTTTGTCCCTGACTGTTATAGAGACTCAAGGAAGTGTAACCATTGGTGGCAATGAAGACATCACTATGCAAGCCGGTACTGATCCTTGGCAGGACGAAGATTCTAGAACATTCTATACATGCTTGCCTGACTTAAAAGTTTTTATGCCTAACTATCAAATGAAAGAGCAGACTGTGAAAAGCAAAACTGAAACGGTAACAGAAGAAATGTTAGATGAAGATTTGAAGGAGGATGAATTAAGTGACAATGAGGACCCATCTGTAGTTCAAGAAGTAGAAACTGAAGAAATACAACCACCAAATGTTTCCAATAAACATGGATTAGATACATTTTTGAATGAACTTCCCAACTGTATCAACCGAGAACTCATAGATAATGCAGCAGTTGATTTTATCCTGAATCTCAATACAAAGAATAATCGGAAGAAACTTTCAAGAGTTCTCTTCAGTGTTGCCAGAACAAGGCTAGATCTGTTGCCATTTTACTCAAGATTTGCTGCGATTTTATATCCAGTACTGCCAGAAGTATGTGTTGACCTGTGTCAAATGTTAAAACAAGACTTTAAGTATCATGTCAGGAAAAAGGATCAAATAAATATTGAATCGAAGATAAAAGTGGTGCGATTCATTGGGGAACTGGTTAAGTTTAATTTGTATTCGAAAATGGAGGCGCTGTACTGTTTGAAAGTGTTGCTGCATGATTTTAAGCATCACCATATTGAGATGGCTTGCAATCTGCTTGAAACGTGTGGTAGATATTTATACTGTAATCCAGATACACACCAAAGGACTATGATATATTTACAGCAAATGATGCGAAAAAAAACTGTTTCAGCTCTAGATTCGCGATATGTAACACAGATAGAAAACGCATTCTATTACGTTTGCCCTCCCGAAACTCCTGTTCAGCCTAAAGAAGAAGAGCCACCACTTCATCAATTTATCAGAAAAATACTTCATGAAGACTTGCAGAAAAGTAATGAGGAAAAAATTCTTAGACTAATGCGAAAACTGAATTGGGATGACCCAGAGGTATCCGCCATTGCCATACAACATCTCGCAGGAGGTTGGAGGGTAAGAGCAAGTGCCAGAAGGGCTCTGGCCAGACTGACAGCTGAACTGGCAATCTGGCAAGAAGTAGTAGCTCCAGCAGTCGTTGACACAATATTAGAAGAAATAAGGGTAACAATGGAAGACCCACATCCAAGATATAATCAAAGAAGGATAGCTACTGTTCGGTATCTCGGAGAACTCTATAATTATAAATTATTAGATTCTCGAGATGTTTTCACTGTTTTATATTCATTTATAACATTTGGTGTCACCAATGATCACAGCAGTGTATCTGTATTGGACCCATCTGATAATGTTTTTAGAATAAGACTAGTCTGCGCTCTGCTTGAGACTTGTGGTGCATACTTCAACAGTGGTTCGAGCAAAAAAAGATTAGACTATTTTTTGACCTTCTTCCAAAATTACTATTGGTTCAAGTTCTCTGATCCGATATGGACAAAAGACTATCAATTCCCTATTTACGTTAAATATATTTATCAAGAATGCCTGACGACTTTACGCCCTAAGTTGACTTTGTTTACGAGCTGGCAACAGTGTAAGGATGCAATAGATGAACTACGACAGACTTTATATCCGGAGCTAGGAGAGGAAGAGTACGATAATGAGGATCAAGGTGATGATAGTGTGAACGACGGCTTAGACACAATCATGGAAACGGATGATGAAACGGACAATCCGCAATTGCCTGATGAAAGCTCTGATGAAGAACCGATTACCGAAAATAATGTTAATGACGAAAACGAAATGCAAGATGAAATGGCAATTGAGCCACGAAGACCTGCTACTAAACATGTAGAAGACGTTGAGTTCGAATCGGCATTCGAGAAAATGGTAACAGAAAATATTGCAGAAAGACAACGGGAGAATAGACCGCAACAACGCGACATTGCTGTCCCGATGACCTGCAGACAGACTACGAAGAAGACGTATGAACAGCTCTTGCAAGGAAAAGAGGGCGTGGAATTCGTTCTTATGGTTCGTAAAGGAACGAAACCACAATATAAATCGTTCAGTGCTCCACCGGAATTGGCCAGCAATCTACAACAACAAGCTTTAGCTGATAAACAAGAAATGGAACGAGTTAAACGACTTACTCTAAATATATCGGAAAGACAAGAAGAAGAAGAATATAGCGCAGAGAGCGGTGGTGGATCGGGAGGTATCGGTAATCCTAACAGAGGAGAGGAAGAGTACGATAATGAGGATCAAGGTGATGACAGTGTGAACGACGGCTTAGACACAATTATGGAAACGGATGATGAAACGGACAATCCGCAATTGCCTGATGAAAGTTCTGATGAAGAACCGATTACCGAAAATAATGTTAATGACGAAAACGAAATGCAAGATGAAATGGCAATTGAGCCACGAAGACCTGCTACTAAACATGTAGAAGACGTTGAGTTCGAATCGGCATTCGAGAAAATGGTAACAGAAAATATTGCAGAAAGACAACGGGAGAATAGACCGCAACAACGCGACATTGCTGTCCCGATGACCTGCAGACAGACTACGAAGAAGACGTATGAACAGCTCTTGCAAGGAAAAGAGGGCGTGGAATTCGTTCTTATGGTTCGTAAAGGAACGAAACCACAATATAAATCGTTCAGTGCTCCACCGGAATTGGCCAGCAATCTACAACAACAAGCTTTAGCTGATAAACAAGAAATGGAACGAGTTAAACGACTTACTCTAAATATATCGGAAAGACAAGAAGAAGAAGAATATAGCGCAGAGAGCGGTGGTGGATCGGGAGGTATCGGTAATCCTAACAGAGGTCAGCATGTTCGTCAGAAATACCAACATCCCAAAGGGGCACCGGACGCCGATCTCATATTCGGTCCTAAGAAATTTAAATAA

Protein

MTATNNDEANETPIEEPLKDLEENEKAALEEYTANLEARLKQKYEIRNQNLNCSRPPENYFSKLDSGLKKNTTFVKKLKSFSASQLDVLLKDFATLNLTKYISEVAAAIAEAKLKMSDIPAAITLCSVLHRTYADFSSNFFENWQKILTFKATDKITNSSKLRVDIRFYAELVAVGIFMNKTGLPLLGNVLTVLINMDKEEHNNIPILLSFCKHCGDDYAGLMPRKIREASEKHNIPVPRNTFLPAEKQTAVRTLLKDYFLSLTKHLLAERAQLQALHAANQRTLHTRGELSQERKEQLEQHQTTYDKLLVNAQNFAEVLGEDLGEAGEPPTLSLTVIETQGSVTIGGNEDITMQAGTDPWQDEDSRTFYTCLPDLKVFMPNYQMKEQTVKSKTETVTEEMLDEDLKEDELSDNEDPSVVQEVETEEIQPPNVSNKHGLDTFLNELPNCINRELIDNAAVDFILNLNTKNNRKKLSRVLFSVARTRLDLLPFYSRFAAILYPVLPEVCVDLCQMLKQDFKYHVRKKDQINIESKIKVVRFIGELVKFNLYSKMEALYCLKVLLHDFKHHHIEMACNLLETCGRYLYCNPDTHQRTMIYLQQMMRKKTVSALDSRYVTQIENAFYYVCPPETPVQPKEEEPPLHQFIRKILHEDLQKSNEEKILRLMRKLNWDDPEVSAIAIQHLAGGWRVRASARRALARLTAELAIWQEVVAPAVVDTILEEIRVTMEDPHPRYNQRRIATVRYLGELYNYKLLDSRDVFTVLYSFITFGVTNDHSSVSVLDPSDNVFRIRLVCALLETCGAYFNSGSSKKRLDYFLTFFQNYYWFKFSDPIWTKDYQFPIYVKYIYQECLTTLRPKLTLFTSWQQCKDAIDELRQTLYPELGEEEYDNEDQGDDSVNDGLDTIMETDDETDNPQLPDESSDEEPITENNVNDENEMQDEMAIEPRRPATKHVEDVEFESAFEKMVTENIAERQRENRPQQRDIAVPMTCRQTTKKTYEQLLQGKEGVEFVLMVRKGTKPQYKSFSAPPELASNLQQQALADKQEMERVKRLTLNISERQEEEEYSAESGGGSGGIGNPNRGEEEYDNEDQGDDSVNDGLDTIMETDDETDNPQLPDESSDEEPITENNVNDENEMQDEMAIEPRRPATKHVEDVEFESAFEKMVTENIAERQRENRPQQRDIAVPMTCRQTTKKTYEQLLQGKEGVEFVLMVRKGTKPQYKSFSAPPELASNLQQQALADKQEMERVKRLTLNISERQEEEEYSAESGGGSGGIGNPNRGQHVRQKYQHPKGAPDADLIFGPKKFK

Uniprot

H9J0T8   A0A2H1VKF0   A0A2A4J949   A0A194PMU8   A0A194R374   A0A212FFC7   + More
A0A0N0U5C4   A0A310SHT9   A0A154PDL7   A0A087ZX64   A0A151XJM8   A0A195F342   E9ISZ5   A0A0L7R946   A0A195E0R8   A0A2A3EAV8   A0A026WQ77   A0A195CR04   F4X3S5   E2BUI0   A0A195BGS1   A0A158P040   E2AYH1   A0A0J7NTW4   D6WHX3   K7IZ43   A0A1W4XUB7   N6TXE7   A0A1Y1MPQ0   A0A1B6CUR7   A0A1B6LDI7   A0A1B6KPM1   A0A1B6L2P9   A0A1B6L992   A0A067RKY2   L7M4R3   A0A131XHQ0   A0A224Z5A9   A0A1Q3F5B3   A0A1E1X8P5   U5EXL6   Q16SF8   A0A1S4FQS3   T1IJL6   A0A2L2Y757   A0A2L2Y783   A0A2L2Y742   B0WQS0   A0A293LI83   A0A1B0CQR6   E0W174   V4B1H8   A0A336KYH8   A0A2S2QAV7   A0A069DX17   A0A224XAG8   A0A2H8TUY7   A0A336MDV6   A0A2S2NR36   A0A0V0G539   J9K7G2   A0A2C9JCU7   A0A2C9JCU8   A0A0K8S5Q6   A0A3P8UQI6   A0A0A9YP83   A0A0A9YIK5   A0A2I4DA10   A0A023GP60  

Pubmed

19121390    26354079    22118469    21282665    24508170    21719571    + More
20798317    21347285    18362917    19820115    20075255    23537049    28004739    24845553    25576852    28049606    28797301    28503490    17510324    26561354    20566863    23254933    26334808    15562597    24487278    25401762    26823975   

EMBL

BABH01010331    BABH01010332    BABH01010333    BABH01010334    ODYU01002883    SOQ40922.1    + More
NWSH01002294    PCG68647.1    KQ459598    KPI94642.1    KQ460779    KPJ12258.1    AGBW02008830    OWR52436.1    KQ435794    KOX74044.1    KQ763839    OAD54703.1    KQ434879    KZC09999.1    KQ982074    KYQ60505.1    KQ981856    KYN34504.1    GL765434    EFZ16389.1    KQ414628    KOC67353.1    KQ979955    KYN18474.1    KZ288298    PBC28903.1    KK107139    EZA57851.1    KQ977394    KYN03075.1    GL888624    EGI58872.1    GL450678    EFN80650.1    KQ976490    KYM83352.1    ADTU01005314    GL443910    EFN61506.1    LBMM01001709    KMQ95855.1    KQ971321    EFA00043.2    APGK01057597    KB741280    KB631855    ENN70982.1    ERL86757.1    GEZM01025032    JAV87632.1    GEDC01020223    JAS17075.1    GEBQ01018453    JAT21524.1    GEBQ01026584    JAT13393.1    GEBQ01021975    JAT18002.1    GEBQ01019707    JAT20270.1    KK852564    KDR21260.1    GACK01006911    JAA58123.1    GEFH01003400    JAP65181.1    GFPF01010204    MAA21350.1    GFDL01012290    JAV22755.1    GFAC01003531    JAT95657.1    GANO01002485    JAB57386.1    CH477674    EAT37393.1    JH430315    IAAA01014854    LAA03993.1    IAAA01014856    LAA03998.1    IAAA01014855    LAA03996.1    DS232044    EDS32994.1    GFWV01002829    MAA27559.1    AJWK01023927    AJWK01023928    DS235866    EEB19380.1    KB200538    ESP01156.1    UFQS01001240    UFQT01001240    SSX09887.1    SSX29610.1    GGMS01005686    MBY74889.1    GBGD01000261    JAC88628.1    GFTR01008502    JAW07924.1    GFXV01006298    MBW18103.1    UFQS01000770    UFQT01000770    SSX06754.1    SSX27099.1    GGMR01006833    MBY19452.1    GECL01002982    JAP03142.1    ABLF02030392    GBRD01017777    JAG48050.1    GBHO01010696    GDHC01001865    JAG32908.1    JAQ16764.1    GBHO01010697    GDHC01015949    JAG32907.1    JAQ02680.1    GBBM01000443    JAC34975.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000053105    + More
UP000076502    UP000005203    UP000075809    UP000078541    UP000053825    UP000078492    UP000242457    UP000053097    UP000078542    UP000007755    UP000008237    UP000078540    UP000005205    UP000000311    UP000036403    UP000007266    UP000002358    UP000192223    UP000019118    UP000030742    UP000027135    UP000008820    UP000002320    UP000092461    UP000009046    UP000030746    UP000007819    UP000076420    UP000265120    UP000192220   

PRIDE

H9J0T8   

Pfam

PF04050   Upf2        + More
PF02854   MIF4G

Interpro

IPR016021   MIF4-like_sf        + More
IPR007193   Upf2/Nmd2_C       
IPR003890   MIF4G-like_typ-3       
IPR016024   ARM-type_fold       
IPR039762   Nmd2/UPF2       

SUPFAM

SSF48371   SSF48371       

Gene 3D

1.25.40.180    

ProteinModelPortal

H9J0T8   A0A2H1VKF0   A0A2A4J949   A0A194PMU8   A0A194R374   A0A212FFC7   + More
A0A0N0U5C4   A0A310SHT9   A0A154PDL7   A0A087ZX64   A0A151XJM8   A0A195F342   E9ISZ5   A0A0L7R946   A0A195E0R8   A0A2A3EAV8   A0A026WQ77   A0A195CR04   F4X3S5   E2BUI0   A0A195BGS1   A0A158P040   E2AYH1   A0A0J7NTW4   D6WHX3   K7IZ43   A0A1W4XUB7   N6TXE7   A0A1Y1MPQ0   A0A1B6CUR7   A0A1B6LDI7   A0A1B6KPM1   A0A1B6L2P9   A0A1B6L992   A0A067RKY2   L7M4R3   A0A131XHQ0   A0A224Z5A9   A0A1Q3F5B3   A0A1E1X8P5   U5EXL6   Q16SF8   A0A1S4FQS3   T1IJL6   A0A2L2Y757   A0A2L2Y783   A0A2L2Y742   B0WQS0   A0A293LI83   A0A1B0CQR6   E0W174   V4B1H8   A0A336KYH8   A0A2S2QAV7   A0A069DX17   A0A224XAG8   A0A2H8TUY7   A0A336MDV6   A0A2S2NR36   A0A0V0G539   J9K7G2   A0A2C9JCU7   A0A2C9JCU8   A0A0K8S5Q6   A0A3P8UQI6   A0A0A9YP83   A0A0A9YIK5   A0A2I4DA10   A0A023GP60  

PDB

4CEM     E-value=1.2617e-76,     Score=734

KEGG

101741929    K14327 regulator of nonsense transcripts 2 | (RefSeq) regulator of nonsense transcripts 2-like

PATHWAY

03013    RNA transport - Bombyx mori (domestic silkworm)
03015    mRNA surveillance pathway - Bombyx mori (domestic silkworm)

GO

GO:0003723   GO:0000184   GO:0005737   GO:0005844   GO:0035145   GO:0005515   GO:0005488   GO:0016020   GO:0005839   GO:0051603   GO:0008483   GO:0006418   GO:0016507   GO:0048384  

PANTHER

PTHR12839  

Length:

1308

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

2.57297

Exp number, first 60 AAs:

0

Total prob of N-in:

0.11408

outside

1  -  1308

 

 

Pi

210.869853

Theta

165.94787

Tajima's D

0.746179

CLR

0.001441

CSRT

0.586420678966052

Interpretation

Uncertain