SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02198  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA003126
Annotation
PREDICTED:_nuclear_pore_complex_protein_Nup93-like_[Amyelois_transitella]
Full name
Nuclear pore protein      
Location in the cell
Cytoplasmic   Reliability : 2.234
 

Sequence

CDS
ATGGGAGATGAAGGATTTAGTAAACTACTTCAACAAGCAGAACAGTTAACGACTGAGATAGAAGGTAATGAAGAATTGCCGAGAGTTGAACGTTCTTTAGGGCAAGTTCTCGAGGCCTCCCAGGAACTTTACTCGAGAGTAATACAATCTGGCGCTAACGATATTCAAGCGCACTTATTGTTTGGCTCTAAAGGAATTGATCTAAACCAAATCTCACAAAAATTGGAGACACTTAGTTCAAAGCGTACTTTTGAGCCCCTCCAGCCAATAGCTGATTCAGATATTGAAAGTTTTTTGAAGAATGAAAAAGAAAATGCTATATTATCCCTTATTGATGAAGTCAACAAAAATTCCCTGCAAACAACAGAGGATCAAAAATGGGAACACATGCTCTCAGAATGGAATAAAGAAAAGATCAAACTCATGAATGCAATGATTGGTCCCTCACAAAACTGGCTAGACTTGAAACGCACTCCTGAACCTCCTAGTATTGCTGATGCTCCTAAAAAATTTGGACATTCAATGTTGGATAATGTTGAAGCAGCATATGCCAGACAGGTTCATCAGTATAATAAATATGTATTCCAAGGTGCTAAATCAAGAACAGCTTTGCATCAGAAATTTGCTCAGGTAGCTGAGGACTTCAATGACCCTAAAGTAAAGGAGATGTGGGATATAATAAATACGATGGCCAATATCCCAGCCCTGGTGAGAGATGAAGATCCACTGAAAGCAAGAGGCAATCCAGCAATACAACAGTGTCTTGTCGCACAAGGAAAGAAATACTTACAGAAAAGGTACAAACTATACATGAATGATGTAGTACGTGCCAACCCTGCGGCTGCCCTCCGCGGCGGCGAACCTGGTACATACCCACTTGTTCGAGGATTTGTAGGGCTACGTCTTCAGGGACAGAATTCACAAGGTTTCACTGATGGAGTCATAGATGAACGCCCACTCTGGCCCATGGTTTACTATTGTTTAAGGAGCGGAGATCCAAATGCGGCATTACATTGTTTGAGAAAAGCTGGGCGTGATCATGAAGAATTCATAGCTGCTTTAGAAGAGTATATCCGAAACCCTGAAAAACCACTAAGCGACAAACTGCAGACAGCCATAAATTTCCAATACAGAATACAAGTTCGGAATTCTACAGATCCTTATAAAAGAGCAGTGTACTGTGTGATTGGTTGCTGCGACGTGAGCGACGAGCACTACGAGGTGGCGCGTACGGCCGACGACTACCTCTGGTTGAAACTCTCCTTCATAAGGACGCGCAGTGCCAACGAAACGGAATCGTTCTCTTATTCAGACCTACAGAAACTTATTCTGGAGGAATATGGTGAAACGCATTATCATGCTTATGAAAAACCGGTCGTGTACTTTCAAGTGTTGGCTCTGACTGGACAGTTTGAGCCAGCTATCGAATTCCTCTCGAGAATACCAAGATATCAAGTACACGGTGTTCATATGGCTCTTGCGTTACATGACGTTTACATGCTGGGCACACCGAGGAATGTTCAAGCTCCACTCCTGTCTGTGGACACAGAAGATCCACCACCGTTGCGTCGTTTGAACTTAGCGAGACTGTTACTGCTTTACGTTAGAAAATTTGAACTGACTGATCCCTCTGATGCTTTGCATTACTACTACTTCTTAAGGAATCTAAAAGATCCGAGCGGTAAGAATTTATTCATGTGCTGCTGCACAGACTTGGCATTGGAGAGTAGAGATTACGAGCTCCTATTTGGTCGAATTGACGCTAATTCAAGTTTGAGAAGCCCTGGATTGGTGGATCAATTCAATAACCCTCATATTGACAGCAAGGTGATTGCGTTGAATGTTGCTGAGCAGCTCGTAAACAAGGGCTTATTTGAAGATGCTATTACCATGTACGATATTGCAGATAATTTGGAAAAGGTCGTAGAGTTGTCCTGCGTATTGCTAGCGCAGGTGGTGAATAGCGGCGGCGGGGAAACCGGAGTGCGCGGTCGGCTCGCTAAACGATGTGAACTGACTGACGCGAGGCTACGGGCCTCCACCGAAACCTTACCGCCGTCATTGCTACACGCCTATACCAAGCTCTGCAAACTCTGCATCTTCTTCGATCAGTTCCACGCTGACAATTACGATGCGGCACTTGAGACACTAGGCGAGTGCGAGGTGGTGCCGCTGAACGCGTCGGAGCTGGAGGCGCGCGTGGCGGCGGCGCGGAGCGGGCGCGGGGAGCTGCTGCGCTGCCTGCCCGCCGTGCTGCGCGCGCTGTGCACCGTGCTGCTCGCGCACCGCCAGCGGCTGCGGGCCAACGAGCACTCGCACCCGCTCTCCCAACAGAACAATAAGCAATTGGAGTGGCTTCGTGAACAAGCTGAAGTCCTGAATACTTTTGCTGGCAACATCGCATACAGAATGCCTGGAGACACTTACAGTCAATTAGCGCAAATGCAGATACTTATGCACTGA
Protein
MGDEGFSKLLQQAEQLTTEIEGNEELPRVERSLGQVLEASQELYSRVIQSGANDIQAHLLFGSKGIDLNQISQKLETLSSKRTFEPLQPIADSDIESFLKNEKENAILSLIDEVNKNSLQTTEDQKWEHMLSEWNKEKIKLMNAMIGPSQNWLDLKRTPEPPSIADAPKKFGHSMLDNVEAAYARQVHQYNKYVFQGAKSRTALHQKFAQVAEDFNDPKVKEMWDIINTMANIPALVRDEDPLKARGNPAIQQCLVAQGKKYLQKRYKLYMNDVVRANPAAALRGGEPGTYPLVRGFVGLRLQGQNSQGFTDGVIDERPLWPMVYYCLRSGDPNAALHCLRKAGRDHEEFIAALEEYIRNPEKPLSDKLQTAINFQYRIQVRNSTDPYKRAVYCVIGCCDVSDEHYEVARTADDYLWLKLSFIRTRSANETESFSYSDLQKLILEEYGETHYHAYEKPVVYFQVLALTGQFEPAIEFLSRIPRYQVHGVHMALALHDVYMLGTPRNVQAPLLSVDTEDPPPLRRLNLARLLLLYVRKFELTDPSDALHYYYFLRNLKDPSGKNLFMCCCTDLALESRDYELLFGRIDANSSLRSPGLVDQFNNPHIDSKVIALNVAEQLVNKGLFEDAITMYDIADNLEKVVELSCVLLAQVVNSGGGETGVRGRLAKRCELTDARLRASTETLPPSLLHAYTKLCKLCIFFDQFHADNYDAALETLGECEVVPLNASELEARVAAARSGRGELLRCLPAVLRALCTVLLAHRQRLRANEHSHPLSQQNNKQLEWLREQAEVLNTFAGNIAYRMPGDTYSQLAQMQILMH

Summary

Similarity
Belongs to the nucleoporin interacting component (NIC) family.
EMBL
BABH01010335    ODYU01002883    SOQ40923.1    NWSH01002294    PCG68646.1    KQ460779    + More
KPJ12259.1    KQ459598    KPI94643.1    AGBW02003224    OWR55571.1    GAIX01004303    JAA88257.1    KK853129    KDR10998.1    CH477788    EAT36220.1    AXCN02000107    GFDL01012832    JAV22213.1    DS231912    EDS25850.1    NEVH01016296    PNF26074.1    AXCM01004252    APCN01002209    AAAB01008851    EAA07366.5    JXUM01001746    KQ560127    KXJ84321.1    GDHF01026959    GDHF01014588    JAI25355.1    JAI37726.1    ADMH02001543    ETN62114.1    GAKP01009541    JAC49411.1    GAMC01005966    JAC00590.1    GBXI01001208    JAD13084.1    GGFK01006591    MBW39912.1    GBXI01006627    JAD07665.1    GGFK01006599    MBW39920.1    JRES01000509    KNC30501.1    JXJN01025426    CCAG010020713    GGFJ01002242    MBW51383.1    AJVK01000653    AJVK01000654    GFDF01003064    JAV11020.1    KQ971342    EFA03584.1    UFQT01000137    SSX20705.1    KB632219    ERL90181.1    APGK01051372    APGK01051373    KB741190    ENN73001.1    LJIG01022646    KRT79461.1    AJWK01026051    CCAG010023846    GBYB01003445    JAG73212.1    ADTU01018662    KQ982579    KYQ54561.1    KQ976537    KYM81405.1    KQ981693    KYN37612.1    KQ434819    KZC06930.1    KQ978881    KYN27848.1    GL887908    EGI69430.1    JXJN01012355    KK107119    QOIP01000009    EZA58757.1    RLU18405.1    KQ978344    KYM94910.1    GEZM01033303    JAV84272.1    GL765107    EFZ16893.1    KQ435803    KOX73131.1    LBMM01002347    KMQ94948.1    GL435652    EFN72854.1    NNAY01004881    OXU17301.1    KQ764881    OAD54318.1    KZ288215    PBC32765.1    KQ414652    KOC66137.1    GL450531    EFN80887.1    GECZ01003728    JAS66041.1    GBRD01011004    JAG54820.1    GDIQ01030712    LRGB01000512    JAN64025.1    KZS18548.1    GBHO01000999    GBHO01000998    GDHC01013077    GDHC01009684    JAG42605.1    JAG42606.1    JAQ05552.1    JAQ08945.1    GEDC01024066    JAS13232.1    DS235874    EEB19712.1    GL732530    EFX86453.1    GDIP01057982    JAM45733.1    GBGD01000498    JAC88391.1    GFTR01008083    JAW08343.1    GECL01002168    JAP03956.1    ACPB03019922    CVRI01000066    CRL06014.1    MRZV01001806    PIK35818.1    DS469575    EDO41551.1   
Pfam
PF04097   Nic96
Interpro
IPR007231   Nucleoporin_int_Nup93/Nic96       
PDB
5IJO     E-value=4.02983e-154,     Score=1400

Ontologies

Topology

Subcellular location
  
Length:
820
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00782
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00001
outside
1  -  820
 
 

Population Genetic Test Statistics

Pi
229.962303
Theta
194.024075
Tajima's D
0.579855
CLR
0.089261
CSRT
0.544072796360182
Interpretation
Uncertain
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