Gene

KWMTBOMO02197

Pre Gene Modal

BGIBMGA003127

Annotation

PREDICTED:_general_transcription_factor_3C_polypeptide_5_[Papilio_xuthus]

Location

Bomo_Chr4(-):13774709-13781256      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.923

CDS

ATGGAACAGAATAATTTTAGTCATAGTATAGCGGCTGTTCTTTTCCCTGGACTTGTTAAAAACGAAGACAAAGCTATTGAATGTTTGGGTGGTATAAGACAATTGTCTCAGGCTTACACAGAGTTAAACAAAAAACGTCTTGGTCTATCATATCAGCCACAAAATAAACTAGCAAAGAAAATTTATGGCGACTGCGTCAATACTGCTGGTGTGCTCCTGAAAGTTAAAGTAAAAAAAACCATAAATGGCAGTGAAGTGAAAAGGGAGGTAATTTCGACCACCCCACTAGGACAAGTCAGGAAAATATATAAATTTGAATCTTTGTGTGATTTTCAATATTTGCCTGTGAGCAAAGAAGGTGCAGGCTCTGCTCCTCCGCAGTGTATATTAGAACAAATCATGCCTTCTGGAGTTGATACTCTACAATTTTTAACGGAACCAGGACCACAGTTCATAATACCATCAAGTTTCTCGAGATTTGACAAACCTTTAAATCTCGATTATATTGAGAAGAAGAGCATTCTAGAAAAGAACACATCACTTGGTCAAGATGATGATATACACAGAAAAAGAAGACTGGAGCGAGGTGGACAACCAACAGGATTGAAATTCAGCTTAACTGAAGAATTTCCTAAAGAACCACATGAGTACCATTTAAATCAAAAGAGTGAGAGGATGTCTGTTTACCCAGAACTTCAGAGAGATTATGAAGCTGTAAAGAAGATATTTGAAGAAAGGCCGATTTGTTCACAAAATTACATTAAATACCACACTAAAATAAAATTAGTGTTATTAAAAATAATAATGCCATGTTTGGCATTTTATATGATAGATGGTCCATGGAGAACTATGTATATTAAATTTGGATATGACCCTAGAAAGGATCCAAGCTCTCGTAGATACCAAACTTTGGATTTCAGAGTGAGACACCAAGCTGGTTTGAGGTCTATGGTAGTACATTATAAAAAGTCCGAAAGGATACGTAACAAGAGGCGCAAGCAGCCGGATGAGTCCTTTGGAACTGAAGAGAATGTCCCCGAGGCTGTCATATATTTTAGACCTGACACTATGATTTCACAACGACAAGTTTACTATCAGATATGCGATGTACAGCTGCCCGAAGTTCAGGAGATATTAGCTTTGGAGCCTCCAGTTGGATTCGTGTGCCACGAAAAACGTGGCTGGCTTCCTCCGAACACGACCGATGTCTGTCGCGATCACATGTCACGTTATACCAAAGAAGCCCTGCTCTCTAACTTTACTGCTGACATGAAGCTAGAGCACGCTTTAAGTGACGACGACTCCAACACAGATGAAGATATGAATTTAGGCGATACAAATGAAATGGTTCACTAA

Protein

MEQNNFSHSIAAVLFPGLVKNEDKAIECLGGIRQLSQAYTELNKKRLGLSYQPQNKLAKKIYGDCVNTAGVLLKVKVKKTINGSEVKREVISTTPLGQVRKIYKFESLCDFQYLPVSKEGAGSAPPQCILEQIMPSGVDTLQFLTEPGPQFIIPSSFSRFDKPLNLDYIEKKSILEKNTSLGQDDDIHRKRRLERGGQPTGLKFSLTEEFPKEPHEYHLNQKSERMSVYPELQRDYEAVKKIFEERPICSQNYIKYHTKIKLVLLKIIMPCLAFYMIDGPWRTMYIKFGYDPRKDPSSRRYQTLDFRVRHQAGLRSMVVHYKKSERIRNKRRKQPDESFGTEENVPEAVIYFRPDTMISQRQVYYQICDVQLPEVQEILALEPPVGFVCHEKRGWLPPNTTDVCRDHMSRYTKEALLSNFTADMKLEHALSDDDSNTDEDMNLGDTNEMVH

Uniprot

H9J0U0   A0A194PU33   A0A2A4JB46   A0A194R4U1   A0A2H1VJF0   A0A212FBA8   + More
E0VNE6   A0A067QXL9   A0A336K515   A0A1B6DG43   A0A1B6FP34   A0A0A9XTA8   A0A1B6J335   Q16W48   A0A224XMU0   A0A1S4FMD1   A0A0P4W0S4   A0A182YNG4   A0A182UUI6   A0A182L6J4   A0A1B0C8R7   A0A1S4JKH6   B0WIR2   A0A182K1S1   A0A1B6LPS5   B4KKG1   A0A1I8MBH0   A0A182G5N9   A0A084VM61   A0A1Q3F4E3   A0A034VQI9   Q7PSE7   A0A1S4H0Q3   A0A0P4W4R1   A0A182VUL0   A0A182Q8M7   A0A2T7NMM8   A0A182RAV4   A0A1A9XGT8   A0A1B0BJF5   A0A1B0B7M4   A0A034VN36   A0A240PMP5   A0A1B0A542   A0A1A9V9J9   A0A0P5GWH2   A0A162T0L4   B4M937   A0A1B0FDE3   B4JPA7   A0A0B6Y834   A0A1W4XK46   T1HR27   A0A293LM76   W8B472   A0A0P5LCP5   A0A0P6GDZ1   A0A0P6DV97   A0A0K8V1Q3   A0A0P5RG53   A0A0P6GE83   A0A0P5SXP4   A0A182SNC7   A0A0P4XF75   A0A158NNB1   A0A2M4BMD3   A0A0M4E7W0   D6WN73   A0A1W4W9G8   A0A182M0C0   K1P552   B4Q9H1   E9FVE5   B4I5S0   A0A182HGC5   A0A131XXW5   A0A147BND5   A0A0P5P463   W5LA77   Q9VIZ2   Q5BIF0   A0A1S3WHI3   B3NM87   A7RMW5   G3IIM7   A1L1K6   A0A023EQ15   A0A1U7RBU5   H0WZE8   A0A3M6T717   A0A1U7R1E3   A0A0P5BF59   A0A0C9PPL3   B7QJM5   T1J199  

Pubmed

19121390    26354079    22118469    20566863    24845553    25401762    + More
26823975    17510324    25244985    20966253    17994087    25315136    26483478    24438588    25348373    12364791    27129103    24495485    21347285    18362917    19820115    22992520    22936249    21292972    29652888    25329095    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17615350    21804562    29704459    15489334    15057822    24945155    30382153   

EMBL

BABH01010335    BABH01010336    KQ459598    KPI94645.1    NWSH01002294    PCG68642.1    + More
KQ460779    KPJ12260.1    ODYU01002883    SOQ40926.1    AGBW02009357    OWR51025.1    AAZO01008544    DS235336    EEB14902.1    KK852840    KDR15195.1    UFQS01000123    UFQT01000123    SSX00066.1    SSX20446.1    GEDC01012644    JAS24654.1    GECZ01017850    JAS51919.1    GBHO01039597    GBHO01020693    GBHO01020685    GBRD01007157    GBRD01007156    GBRD01007155    GDHC01010374    GDHC01004151    GDHC01003154    JAG04007.1    JAG22911.1    JAG22919.1    JAG58664.1    JAQ08255.1    JAQ14478.1    JAQ15475.1    GECU01014107    JAS93599.1    CH477575    EAT38805.1    GFTR01006524    JAW09902.1    GDRN01101449    JAI58371.1    AJWK01001311    DS231951    EDS28639.1    GEBQ01029500    GEBQ01014463    JAT10477.1    JAT25514.1    CH933807    EDW11611.1    JXUM01146429    KQ570172    KXJ68430.1    ATLV01014579    KE524975    KFB39055.1    GFDL01012609    JAV22436.1    GAKP01014253    JAC44699.1    AAAB01008835    EAA05774.5    GDKW01000262    JAI56333.1    AXCN02000844    PZQS01000011    PVD22430.1    JXJN01015380    JXJN01009687    GAKP01014251    JAC44701.1    GDIQ01257918    JAJ93806.1    LRGB01000024    KZS21791.1    CH940654    EDW57713.1    CCAG010008798    CH916372    EDV98737.1    HACG01005454    CEK52319.1    ACPB03024613    GFWV01004239    MAA28969.1    GAMC01014697    JAB91858.1    GDIQ01171414    JAK80311.1    GDIQ01034621    JAN60116.1    GDIQ01086943    JAN07794.1    GDHF01019470    JAI32844.1    GDIQ01101970    JAL49756.1    GDIQ01036161    JAN58576.1    GDIP01140938    JAL62776.1    GDIP01245157    JAI78244.1    ADTU01002654    ADTU01002655    ADTU01002656    ADTU01002657    ADTU01002658    GGFJ01005099    MBW54240.1    CP012525    ALC42866.1    KQ971342    EFA03073.1    AXCM01001945    JH816674    EKC18757.1    CM000361    CM002910    EDX05478.1    KMY90951.1    GL732525    EFX88540.1    CH480822    EDW55726.1    APCN01004213    GEFM01005375    JAP70421.1    GEGO01003101    JAR92303.1    GDIQ01134029    JAL17697.1    AE014134    AAF53767.1    BT021274    AAX33422.1    CH954179    EDV54687.1    DS469521    EDO47172.1    JH003061    RAZU01000235    EGW14225.1    RLQ63974.1    AC129847    BC129109    AAI29110.1    GAPW01001956    JAC11642.1    AAQR03116679    RCHS01004182    RMX37197.1    GDIP01186086    JAJ37316.1    GBYB01003143    JAG72910.1    ABJB010404778    ABJB010545262    ABJB010921981    ABJB011027011    DS953309    EEC19047.1    JH431781   

Proteomes

UP000005204    UP000053268    UP000218220    UP000053240    UP000007151    UP000009046    + More
UP000027135    UP000008820    UP000076408    UP000075903    UP000075882    UP000092461    UP000002320    UP000075881    UP000009192    UP000095301    UP000069940    UP000249989    UP000030765    UP000007062    UP000075920    UP000075886    UP000245119    UP000075900    UP000092443    UP000092460    UP000075880    UP000092445    UP000078200    UP000076858    UP000008792    UP000092444    UP000001070    UP000192223    UP000015103    UP000075901    UP000005205    UP000092553    UP000007266    UP000192221    UP000075883    UP000005408    UP000000304    UP000000305    UP000001292    UP000075840    UP000018467    UP000000803    UP000079721    UP000008711    UP000001593    UP000001075    UP000273346    UP000002494    UP000189706    UP000005225    UP000275408    UP000001555   

PRIDE

H9J0U0    Q9VIZ2    Q5BIF0    G3IIM7    B7QJM5   

Pfam

PF17682   Tau95_N        + More
PF09734   Tau95
PF05008   V-SNARE
PF01145   Band_7
PF00616   RasGAP
PF02204   VPS9
PF18151   DUF5601

Interpro

IPR041499   Tau95_N        + More
IPR040454   TF_IIIC_su-5       
IPR019136   TF_IIIC_su-5_HTH       
IPR001107   Band_7       
IPR038407   v-SNARE_N_sf       
IPR007705   Vesicle_trsprt_v-SNARE_N       
IPR010989   SNARE       
IPR000163   Prohibitin       
IPR036013   Band_7/SPFH_dom_sf       
IPR001936   RasGAP_dom       
IPR003123   VPS9       
IPR037191   VPS9_dom_sf       
IPR041545   DUF5601       
IPR008936   Rho_GTPase_activation_prot       

SUPFAM

SSF117892   SSF117892        + More
SSF47661   SSF47661       
SSF109993   SSF109993       
SSF48350   SSF48350       

Gene 3D

1.20.58.400     1.20.1050.80    

CDD

cd03401  SPFH_prohibitin

ProteinModelPortal

H9J0U0   A0A194PU33   A0A2A4JB46   A0A194R4U1   A0A2H1VJF0   A0A212FBA8   + More
E0VNE6   A0A067QXL9   A0A336K515   A0A1B6DG43   A0A1B6FP34   A0A0A9XTA8   A0A1B6J335   Q16W48   A0A224XMU0   A0A1S4FMD1   A0A0P4W0S4   A0A182YNG4   A0A182UUI6   A0A182L6J4   A0A1B0C8R7   A0A1S4JKH6   B0WIR2   A0A182K1S1   A0A1B6LPS5   B4KKG1   A0A1I8MBH0   A0A182G5N9   A0A084VM61   A0A1Q3F4E3   A0A034VQI9   Q7PSE7   A0A1S4H0Q3   A0A0P4W4R1   A0A182VUL0   A0A182Q8M7   A0A2T7NMM8   A0A182RAV4   A0A1A9XGT8   A0A1B0BJF5   A0A1B0B7M4   A0A034VN36   A0A240PMP5   A0A1B0A542   A0A1A9V9J9   A0A0P5GWH2   A0A162T0L4   B4M937   A0A1B0FDE3   B4JPA7   A0A0B6Y834   A0A1W4XK46   T1HR27   A0A293LM76   W8B472   A0A0P5LCP5   A0A0P6GDZ1   A0A0P6DV97   A0A0K8V1Q3   A0A0P5RG53   A0A0P6GE83   A0A0P5SXP4   A0A182SNC7   A0A0P4XF75   A0A158NNB1   A0A2M4BMD3   A0A0M4E7W0   D6WN73   A0A1W4W9G8   A0A182M0C0   K1P552   B4Q9H1   E9FVE5   B4I5S0   A0A182HGC5   A0A131XXW5   A0A147BND5   A0A0P5P463   W5LA77   Q9VIZ2   Q5BIF0   A0A1S3WHI3   B3NM87   A7RMW5   G3IIM7   A1L1K6   A0A023EQ15   A0A1U7RBU5   H0WZE8   A0A3M6T717   A0A1U7R1E3   A0A0P5BF59   A0A0C9PPL3   B7QJM5   T1J199  

PDB

4BJI     E-value=6.42351e-11,     Score=163

KEGG

101742229    K15202 general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) | (RefSeq) g

GO

GO:0006384   GO:0000127   GO:0070898   GO:0006886   GO:0016020   GO:0016192   GO:0005623   GO:0007165   GO:0043087   GO:0016021   GO:0035914   GO:0005654  

PANTHER

PTHR13230   PTHR23222  

Length:

451

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

8.72202

Exp number, first 60 AAs:

0.00412

Total prob of N-in:

0.42670

outside

1  -  451

 

 

Pi

23.870214

Theta

21.211305

Tajima's D

1.034361

CLR

0.967429

CSRT

0.670066496675166

Interpretation

Uncertain