SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02182
Annotation
Agglucetin_subunit_alpha-1?_partial_[Operophtera_brumata]
Location in the cell
Nuclear   Reliability : 2.302
 

Sequence

CDS
ATGCACAGTTTGGTGGATACTACGGCTCAATACGACGCCGTGCGAGCTTACCTCAAGGAATTGGACATTACGAGTGCCGTGTGGGTCGGTCTCATACGCAGCAATCCTGACGGCGATTTCACTTGGACGGACTATCGAGGTCTAAGCGGAGAAGGTTATTGGAGCTCAGCACCTGATGCTCGCACTGCCCCATTGTGTGCTGCAGCAAACCCTTCGGCTGACTACCGTTGGGAAGCACGTGCTTGTGGTGGACCCACTGTCGCTTCATTTATTTGCGAATTACCAGTACCACAATGGGCTCTTGGTAACGAGGGTTGCATGATACGGGCGCTACCAGCACTAACAATATTGTATCTCCCTGAAAGCGCCGCGGTTCAACTTACAGCAGATTGTGGTTTAGCCGGTGTGAAACGTGTTCAATGCACAGGAAATGTAAAACGTGAAGATTTGTTGAAAGAATTATCATGTTCCGAAGAAGAAGAGGTTTCAAGTACTCCTGGAGTGGCTGGCTTAACCACCACGTGGGTTTCAACAACAGACCGTTTCACAGATGAAGACGCAACCAAAGATATTACTACTGAGGATAGCATTACTACTGAACACGAAGACGATATAAATCAGTCCACTATCGTATCAGCTACTCCGATTCCAGAGATTGTGAATATTGAGAAAAAACCAAATACTTACTTTTTAAATACTAATATTGTAAATGATATAAATTTGAAAAAAAATGTGGACATAGATGTTATTCATGACAACAATCTTCAAAGTAACATGGTTCCTGAGATACCAATTAAAGTAAATTTCTTAACCAACGAACAGTTAGAGAAAATAGAAGATGAAAAACATATGCAACACAAGATGCTACATGAAGAAATAGCGCGGCTCGGAAACTTGGATAAAATCTTCACTCAACCTACTGATCATTTTGTACCACCTCTTGTGATGGCTAAAGCTAAACTAAGCGATGATATGACTGTATTGTCTTTAGCAGAAAAACACGCGCAACAACTTGCTGTACAGCAATTTACCAAACACAATTTGCGAAATAAAAATGTAGATTATTCCATTGGCAATGGAAACGATCTAACTACACTAAAACCAGTCAACAAAGTAATCGACGTGATAACCCACACTGATCTGAAAACAAGGATTGATGAAAAAAAAGAAAATATAAAACATACTGTACCAAAAAAATACAACGAAAAGTTCGATGATCCGAAAACAAAATTATTAAAAGCACCAGAAATTAAATTATACGATTTCCGTAAAACAACCGTAATTATTCCAGTTCAAACGGAGCTGACAGTCAAAGATGTATATTTTAAAACAAGCACCGCAAGACCCATAATCCAAGAAGCAGTAGCAGATAGTGATGAAGACCATATGATAGATTTGACGGTGTTTTTGAAGGATGAACCAACGGTTGTTCCCAAACAGATAATAAACACAAATTACTCCGGTGATATATCTAACCTTGAAATAATGCAAGATCTCCCAACAGAAATTACTAATCAAACTGAAAATAATTTTAAAACAGTGAACACTACGCTTACAATCATTAACGAGGGTGTCGCTCAAGATTTCAATTCTTCGCAAAAAGTTATCATGAATCACGAAATAGTTAACATTACAATCATTTCAGAAAATGATTCAACTGTAAATCCAACAGTACTTGAAGTTTCCACGATGATGCCTTATTTCCTAGACGTTTTTCGTAACTCAAGTTCTTCTCCCGATGTGTCTTTAAATAATACCACCAGTAATGAAGTACACTCCACAACTAACATGAATATTACTCCGTTAGCCAACGTCACTCAACCTCAAATAGATTCTACAACCATTAATGCTAATATAATTATATCTTCAGAAATACCACCTACTATTTCAAAACAGAATGAAATGACTGATAAATTTCCATTTGAAGGGGACTTTAACTTAAGCACATCATCAACAACCAGTACAATAAGTATTATTACGGAAAAAACTTCAAATACCACCACTATCTTTGGAATACCTGAGGAACCATTTGATATTCCCAACGAATTCCAAGAAGACGATAATCTGAATTCTACCGAGACCAAAATTAACGATTTTCAATCGCCTCTCCTATCAGCGGCGAGCGAACCGATACATAGACCTAATCGGTCAAGGAGACCTCAACAGCAGAACCGAATCAAATTCAATCCATTCCGGATCTTAGGTTAA
Protein
MHSLVDTTAQYDAVRAYLKELDITSAVWVGLIRSNPDGDFTWTDYRGLSGEGYWSSAPDARTAPLCAAANPSADYRWEARACGGPTVASFICELPVPQWALGNEGCMIRALPALTILYLPESAAVQLTADCGLAGVKRVQCTGNVKREDLLKELSCSEEEEVSSTPGVAGLTTTWVSTTDRFTDEDATKDITTEDSITTEHEDDINQSTIVSATPIPEIVNIEKKPNTYFLNTNIVNDINLKKNVDIDVIHDNNLQSNMVPEIPIKVNFLTNEQLEKIEDEKHMQHKMLHEEIARLGNLDKIFTQPTDHFVPPLVMAKAKLSDDMTVLSLAEKHAQQLAVQQFTKHNLRNKNVDYSIGNGNDLTTLKPVNKVIDVITHTDLKTRIDEKKENIKHTVPKKYNEKFDDPKTKLLKAPEIKLYDFRKTTVIIPVQTELTVKDVYFKTSTARPIIQEAVADSDEDHMIDLTVFLKDEPTVVPKQIINTNYSGDISNLEIMQDLPTEITNQTENNFKTVNTTLTIINEGVAQDFNSSQKVIMNHEIVNITIISENDSTVNPTVLEVSTMMPYFLDVFRNSSSSPDVSLNNTTSNEVHSTTNMNITPLANVTQPQIDSTTINANIIISSEIPPTISKQNEMTDKFPFEGDFNLSTSSTTSTISIITEKTSNTTTIFGIPEEPFDIPNEFQEDDNLNSTETKINDFQSPLLSAASEPIHRPNRSRRPQQQNRIKFNPFRILG

Summary

Pfam
PF00059   Lectin_C
Interpro
IPR016187   CTDL_fold        + More
IPR016186   C-type_lectin-like/link_sf       
IPR001304   C-type_lectin-like       
SUPFAM
SSF56436   SSF56436       
Gene 3D

Ontologies

GO

Topology

Length:
735
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.03342
Exp number, first 60 AAs:
0.01907
Total prob of N-in:
0.00183
outside
1  -  735
 
 

Population Genetic Test Statistics

Pi
222.425257
Theta
173.367349
Tajima's D
0.934742
CLR
0
CSRT
0.644567771611419
Interpretation
Uncertain
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