Gene

KWMTBOMO02181

Annotation

Transposon_Tf2-9_polyprotein-like_Protein_[Tribolium_castaneum]

Location

Bomo_Chr4(-):13318114-13322676      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.036

CDS

ATGCCGCCGCGAAAAATACGCCAACAGACGGATGACAATAGTGATTCTGGTGATGAAATGGTGGACGCAGTGCCCTCGCCAGCACCAGTGCTCATGTCCGGGGATCAGCTGTCCTCGCTCCTGGCCGCCTTCTCAAAGTCGCAGGCCGAGGCGAACCGACAACTCGTCGAGTCCCTGTGGGCATCGCATGGTTTGGGAAGTGGATCGAAGTTCACCACCCCGATAGTGTCACCGTCCCCGACGCCAACAAGTAACATGGCTAAATGCACCGCGCGTTTTGATGGCGTCGCTCGCGATCCGGAGGCCGTTGAAGCGTTTATCGACTCTGTGGAGGTGTACAAGGAGTGTGCGTGCGTCTCCGACGATATCGCATTGCGTGGACTACCAATGCTCATGGAAGGCGAAGCAGCCATATGGTGGAGAGGGGTCCGGAACGAAGTGTCCTCGTGGCCCGACGCTCTTAAAAGGTTACGAGCTATGTATGGTGTGCCACGCCCTGCACATAAAGTTTTTCGTGACGTGTTTTCGTCTGAGCAAGGTGATGAGCTTGCTGACAGTTTCATAGTGAGGATACGTGCTATGCTGTCCAGATTGCCGTACCAGCTACCAGAGGAAGCCAGGTTAGACATAATCTACGGTCTACTTCATAAACGGATAAGGAAAAGACTACCGAGAGATGGTGTGAGCGACATAGAAACACTCATAGAGAAGTCGCGCATGGTTGAGGAGTCACTTGTGGAGTGCGCGGCTGCCCTCAACATTCCGCCGCAGCCACACAAGTCGTTACCTACGGTGTTCGGCGAACGCAGCTCCGCGCCTGACGTGACAAGTGTGAGATCGCCGAGACCTGCCGGCGCTGCCGCTGCGCTAGTGCGCTCCTCCGTTGCTGTTGCACCGTCGTCGCTACCTCAACCGTCCCCATCCCCGCGTAGTGTGAAAAGCGAAACATTGGTTAAAAAGCTATTTTGTGTGTATTGCAAATCGCGTGGACATGTCCGTGATTCTTGTAACAAAATTAGTGAAAACAAATCTGTATCTTGTTATGGTTGTGGTGAAAAAGGTTTTATTAAAAGTAACTGTCCAAAATGTAACAATATTCCTAGCAATATTCAGAGTAATGTTATTAATAGAAAGTCGCACGTTAAGGACAATGTATTCTATTCTGTAAATGTAAACACTTTCTCAGATTCACATTGTAATGATAAACATTCTGTAAGTCGACCTATATTGCATATAGGTATACAGGGTTATAATGGGACTGCTTTGTTAGATACCGCCGCACGGCGTAGTATCGCGGGTTACACACTCTACGCGCTTTTTCAACGTTTAGGTATGAAGTTTCGCACTGAAAATATGTCGGTGAGACTCGCGGATGGTACCACTCGGAACACTAAGATATTATTAACACATGCAGACGTTGAATTAAGTTCAGTATGTATACCTATTGAGTTTATTATATTCCCCGATTCTCAGAATAATGAAACCTTGTTAGGAATAGATTTTATTTTGAAGGCACGATTAATAATTGATTTCTCTTCTATGACTTGGCGCTCGGCTGATCAGCCTCGGGACATTCACCCTTTGTCATGTGAAAATTCACGTGACCCCATAAGTTGCGCTTCTATAAACTTGTTGCGCGAGGATGAAGGTAAATTCTTATCGGAGTCGGAAAAGGGGCGTCTGGTGGATTTACTAGGTGAATATACTGATGTTTTCGAGGAAGTCGGTGAGCCGACTCCTTTTTCAGAGCATCGGATCGACACCGGCGACCACCCTCCTATCGCTGTTCCTCCGTATCGTGTCACGCCGGCGAGGAAAGAGGTCATGCGCGCCGAGCTCGACAAGATGCTAGCAGAGGACGTGATCGAGGAATGTGAGTCTGCGTGGTCCGCGTCGTGTGTCTTGGTGCCGAAACCTAACGGTACGTATAGGTTTTGTGTTGATTATAGGAAACTGAATGCGGTCACCAAGACCGATTCCTATCCCATGCCTCGAATTGATGAACTTCTTCAGTCTACCAATGGAGGTTGCGTTATGAGCTCGTTGGATCTTCGGAGCGGGTACTGGCAGGTTCAAACCCTGGACAGAGACAAAACTGCTTTTAGTACACCCTTTGGTACCTTTCGTTTTAAGCGTATGCCTTTCGGCTTGAAGAACGCACCGGCAACCTTTCAGAGACTGATTGATCGGTTTCGATCGGGCTCTTCTCTCCAGGAGGTAGCTATCCTGGCGTATCTCGACGATATTTTAGTGATATCAGAAAATATTGATAAACATTTTTCAGATCTCCGTGCGGTGTTTGACCGGCTCCGCGTGTTCAAGCTGCGAGCCAATAGGGACAAATGCGCTTTTGCCCGGGAGCAAGTCAAATACCTTGGTCACGTGATCTCGAGGTCAGGTATATCTCCGGACAGGGACAAGGTAAGCGCTGTGTTGGATATGAAGGAACCTACATGTCTCCGACAACTTCGTACTTTTCTCCAGACGTGCTCGTGGTTTCGTAAATTCATCCCGAACTTTGCGAAGATAGCCGAACCTCTCACACGATTGACCAAAAAGAGTCAGCTTTGGATTTGGGGCCTGGAGCAGGATGATGCCTTCAAATCTCTTAAGAGGCTACTGACGACATCTCCGATTTTGATACAGGCAGACTATACTAAGCCTTTCATCCTTAGGACTGACGCGAGTGATTATGCTCTAGGTGCATGTTTGCTCCAGGGGGAGTCATCCAATGATGAGCGTCCCATTGAGTACGCCAGTCGTCTTCTGACATCGGCGGAGCGCAACTATTCGACGACCGAACGGGAGGCGCTCGCTGTCGTCTGGGCTGTGGAGCGATTCCGAGGCTACATCGATGGACATCTGGTGCACGTTCGTAGTGACCATCAGCCCCTGAAATGGTTGTTTTCAGTAAAGTCACCGAGCGGCAGGTTAGTTCGCTGGGCTATGAAGCTTCAAGCTTACGATTTGCAAATTGAGTACACCCCAGGAAAAGTTAATGTGATAGCCGACACGCTTAGCCGCCCAGTGACCGAGCTCAACTCGCCACCGGACTGTGGAATCTGTCCCGTTATCGTCGACGTGCCCCACTGGGATGCCGCTTCGACCCGGGACGCTCAGATGGCTGATCCGGAAATTTCCAAGATCATCACTGATTTGGAAGGGACCGATGAATTATCTGTTAATAGATGGTCTGAACGAGGCTATCTCCTAACTCAAGGCGTTCTATACCGCTACGCCGAAGATTCTGAGTCCGAGGAACCTCAGCTAGTCGTACCAGAGAGCTTGCGTGGCAAGGTCATGTTCGAGTGTCATGACTCGCCCACAGCCGCTCACGGGGGGATTCAAAGGACCATTCATCGTATCTCCCAACGATTCTATTTTCCAGGTTTGAGACGCTATGTTACTGAGTATTTGAAAACGTGTATAGAGTGCCAGCGGTACAAGCCGTCTAACTTTAAGCCAGCGGGACTACTCCAGACTCCAGTTCCAGCTCAGCGGTTTGAAGTTATTGCAGTAGACCTTTTCGGGCCTTTACCCAAAGGACCCTGCGGTGAGAGGTGGATCCTGATAGTCGAAGACACCGCCAGTAAGTGGGTTGAGCTGTTCGCTCTCATTGATGCCACTGCCGAGGTATGTGCAAAAACCCTCGTTAATGAAGTCTTTATGAGATTCGGAGTGCCTCGCCGGATGATTTCCGACAACGGAGTTCAATTTGTGGCCGATGTCATGCAAAAGGCTATGTTTGTTTTAGGGGTAAAACAAAATCTCATTCCTCTTTATCATCCCGAAGCCAATCCGGTTGAGCGGAAGAATCGGGACTTAAAGGCTCATCTTGCCATATTGCTTGAAAGCCGTCACCAGCAGTGGCCTGAGGTACTGTCGTTCGTCCGATTCGCTTTTAATAGTTCCGTCTGCACGTCAACCGAGCAAACGCCAGCTTATCTTACCTTTGGTCGTGAGCTCCGATCTCCAATATCCGCTCAGCTTGATCTTCGCGCCGTCGTAGAGTCCGAGAACTTTGTTCCCCAGATAAGCCCATATTTGTCCAAGCTTGCCGAGACCATCTCGACCGCTAAGGAGAATATTGAACATCATCAAGATATTCAAAAGACGCGCGCTGATCTAAGGCGCTCTGAACCTTACCAGTTTGCAGAAGGGGATCTCGTATTGATGAAGACCCACGTACTTAGTAATGCTAGTAAGGGTATTACGTCGAAGTTTAATCCTAAGCGGGATGGGCCATATGTGATTTCAAAAAAGGTGAGTCCTACTTCCTACCTTCTAGCATACGAGTCGTCGGGCGAAGTTTTTGGTAAGTATCATGTCTCGGATTTGCGACCTTATCATGCGAGGGAGGATGTATGTCCCGAGCCTGTGATTCCCAAGCGCCGCCGGGGTCGACCGCGTAGAGTGGTGGAATAG

Protein

MPPRKIRQQTDDNSDSGDEMVDAVPSPAPVLMSGDQLSSLLAAFSKSQAEANRQLVESLWASHGLGSGSKFTTPIVSPSPTPTSNMAKCTARFDGVARDPEAVEAFIDSVEVYKECACVSDDIALRGLPMLMEGEAAIWWRGVRNEVSSWPDALKRLRAMYGVPRPAHKVFRDVFSSEQGDELADSFIVRIRAMLSRLPYQLPEEARLDIIYGLLHKRIRKRLPRDGVSDIETLIEKSRMVEESLVECAAALNIPPQPHKSLPTVFGERSSAPDVTSVRSPRPAGAAAALVRSSVAVAPSSLPQPSPSPRSVKSETLVKKLFCVYCKSRGHVRDSCNKISENKSVSCYGCGEKGFIKSNCPKCNNIPSNIQSNVINRKSHVKDNVFYSVNVNTFSDSHCNDKHSVSRPILHIGIQGYNGTALLDTAARRSIAGYTLYALFQRLGMKFRTENMSVRLADGTTRNTKILLTHADVELSSVCIPIEFIIFPDSQNNETLLGIDFILKARLIIDFSSMTWRSADQPRDIHPLSCENSRDPISCASINLLREDEGKFLSESEKGRLVDLLGEYTDVFEEVGEPTPFSEHRIDTGDHPPIAVPPYRVTPARKEVMRAELDKMLAEDVIEECESAWSASCVLVPKPNGTYRFCVDYRKLNAVTKTDSYPMPRIDELLQSTNGGCVMSSLDLRSGYWQVQTLDRDKTAFSTPFGTFRFKRMPFGLKNAPATFQRLIDRFRSGSSLQEVAILAYLDDILVISENIDKHFSDLRAVFDRLRVFKLRANRDKCAFAREQVKYLGHVISRSGISPDRDKVSAVLDMKEPTCLRQLRTFLQTCSWFRKFIPNFAKIAEPLTRLTKKSQLWIWGLEQDDAFKSLKRLLTTSPILIQADYTKPFILRTDASDYALGACLLQGESSNDERPIEYASRLLTSAERNYSTTEREALAVVWAVERFRGYIDGHLVHVRSDHQPLKWLFSVKSPSGRLVRWAMKLQAYDLQIEYTPGKVNVIADTLSRPVTELNSPPDCGICPVIVDVPHWDAASTRDAQMADPEISKIITDLEGTDELSVNRWSERGYLLTQGVLYRYAEDSESEEPQLVVPESLRGKVMFECHDSPTAAHGGIQRTIHRISQRFYFPGLRRYVTEYLKTCIECQRYKPSNFKPAGLLQTPVPAQRFEVIAVDLFGPLPKGPCGERWILIVEDTASKWVELFALIDATAEVCAKTLVNEVFMRFGVPRRMISDNGVQFVADVMQKAMFVLGVKQNLIPLYHPEANPVERKNRDLKAHLAILLESRHQQWPEVLSFVRFAFNSSVCTSTEQTPAYLTFGRELRSPISAQLDLRAVVESENFVPQISPYLSKLAETISTAKENIEHHQDIQKTRADLRRSEPYQFAEGDLVLMKTHVLSNASKGITSKFNPKRDGPYVISKKVSPTSYLLAYESSGEVFGKYHVSDLRPYHAREDVCPEPVIPKRRRGRPRRVVE

Uniprot

A0A1Y1NDK0   A0A224XHC7   D7EM19   V5I839   A0A3B5R366   A0A224X632   + More
A0A224XHI1   A0A3B3IK80   A0A1Y1JVH7   A0A3B3BX27   A0A023EY78   A0A1B6IL28   A0A3P9MP57   A0A023EXS9   A0A1Y1LZS5   A0A0A9XMW3   A0A3B1JJM2   A0A1Y1NGJ5   L7MMB3   A0A224Z6Q8   A0A0V1GQZ9   A0A0V0RFH3   A0A085MHR7   A0A087TFE2   A0A087TH40  

Pubmed

28004739    18362917    19820115    23542700    17554307    29451363    + More
25474469    25401762    25329095    25576852    28797301    24929829   

EMBL

GEZM01007731    JAV94970.1    GFTR01008566    JAW07860.1    KQ972234    EFA12514.2    + More
GALX01005355    JAB63111.1    GFTR01008489    JAW07937.1    GFTR01008516    JAW07910.1    GEZM01099479    JAV53309.1    GBBI01004690    JAC14022.1    GECU01030157    GECU01020076    JAS77549.1    JAS87630.1    GBBI01004637    JAC14075.1    GEZM01046053    JAV77555.1    GBHO01041895    GBHO01025146    GBHO01025145    GBHO01025144    GBHO01025143    GBHO01014600    GBHO01014569    JAG01709.1    JAG18458.1    JAG18459.1    JAG18460.1    JAG18461.1    JAG29004.1    JAG29035.1    GEZM01005662    GEZM01005661    JAV96000.1    GACK01000610    JAA64424.1    GFPF01011317    MAA22463.1    JYDP01000401    KRZ00760.1    JYDL01000212    KRX13249.1    KL363192    KFD56763.1    KK114971    KFM63831.1    KK115210    KFM64429.1   

Proteomes

UP000007266    UP000002852    UP000001038    UP000261560    UP000265180    UP000018467    + More
UP000055024    UP000054630    UP000054359   

Pfam

PF17921   Integrase_H2C2        + More
PF00665   rve
PF00078   RVT_1
PF17917   RT_RNaseH
PF17919   RT_RNaseH_2
PF03732   Retrotrans_gag
PF00077   RVP
PF00098   zf-CCHC

Interpro

IPR036397   RNaseH_sf        + More
IPR041588   Integrase_H2C2       
IPR000477   RT_dom       
IPR041373   RT_RNaseH       
IPR021109   Peptidase_aspartic_dom_sf       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       
IPR005162   Retrotrans_gag_dom       
IPR001969   Aspartic_peptidase_AS       
IPR001995   Peptidase_A2_cat       
IPR018061   Retropepsins       
IPR036875   Znf_CCHC_sf       

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF57756   SSF57756       

Gene 3D

2.40.70.10     3.30.420.10    

ProteinModelPortal

A0A1Y1NDK0   A0A224XHC7   D7EM19   V5I839   A0A3B5R366   A0A224X632   + More
A0A224XHI1   A0A3B3IK80   A0A1Y1JVH7   A0A3B3BX27   A0A023EY78   A0A1B6IL28   A0A3P9MP57   A0A023EXS9   A0A1Y1LZS5   A0A0A9XMW3   A0A3B1JJM2   A0A1Y1NGJ5   L7MMB3   A0A224Z6Q8   A0A0V1GQZ9   A0A0V0RFH3   A0A085MHR7   A0A087TFE2   A0A087TH40  

PDB

4OL8     E-value=6.46208e-73,     Score=702

KEGG

102466450    no KO assigned | (RefSeq) Mir3402, bmo-mir-3402; microRNA 3402

GO

GO:0015074   GO:0003676   GO:0008270   GO:0005634   GO:0008233   GO:0003964   GO:0004190   GO:0032549   GO:0003824   GO:0006520   GO:0008483   GO:0006418   GO:0016507   GO:0048384  

Length:

1474

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00411

Exp number, first 60 AAs:

0.00048

Total prob of N-in:

0.00018

outside

1  -  1474

 

 

Pi

399.956155

Theta

204.735392

Tajima's D

3.410718

CLR

1.869275

CSRT

0.991950402479876

Interpretation

Uncertain