Silkworm Genome Informatics Database

Gene

KWMTBOMO02171

Pre Gene Modal

BGIBMGA003023

Annotation

PREDICTED:_peptidyl-prolyl_cis-trans_isomerase_G-like_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr4(+):13167307-13176335 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.238

CDS

ATGTCAAAACAAGGAAAAAGAAAAATATCTGTTGAATTGCCGAAAACGAAAGATCTCTCTATTAGACCTAGTGTGTTTGATCGGCTCGGTACTAAGAAATCATCAAGTGCTAAAAAAACAACTGAACATTGTAGACAGTGGGCCCAACACGGCAGCTGTGCTTACGGCAAAAGTTGTAAATTTGCTTCTACGCATACTCTTATCAGTCCTTCTAAACAACGCGCAGCTCATAAAGACAATGATCAGAAACGTTTAGTGAAGGATGATGGGAAGACTAGATTGCATTCTACTGTTATAGTGCGGTCAGGTCAAAGCCCCGAAGGAGAAATCGATAACTGGGACCAAAATGACTTAGAGTATGCAGACACAGATGTCCTCGAAAAACGAAGACAGCAGTTGCAGCGTGAACTAGAATTACAGATGAAAATGGATTCAAACAAAGACATGCGAAAAGATAAAAAAAAAGTCGTGTCCAGTACGTCTTCATCTAGAAGCTCTAGTTCTTCGAGTGTTTCGTCGTCTTCATCAGACGGCAGCACATCGTCATCTTCATCTGGAAGGGAAACTAGAAGGAAAACTAAAAAAGGAAAACTTAAACGAAATTCCAGTTCTTCTTCAGATGGAAACATACCAACAAAAAAGAAATACAATGTGAAGAGTGAACTGTCCAAAAAAGATAAAAGTGATGTTAAAAAAAATATTACAAAAAAAGATGATAGATTAATAAAAAAGAGTGATAGTTCCAAAAAGAAATCAACTTCTAAAACTCCCATAGGAAAAAAGTCACTATCTCCAGGTAAAAAGTCTGGTGGTACTCCACCCATAACATCCAAGACACTTATTAAAAGTTCGTCTAAACACAGTAAATCACCCTTAAGAAGAGATAGGAATAGAAGTGTGTCTCCACATTTTAGGGATAAAGAAAAAGAACGAGAACGTAATAAAGAGAAAGAAAGAGAAAAAGATAGAGATAAGGATAGAGAAAAAGAAAGAGACAGAAACAGAGCACGTAGTAGAACTCCACGAAAAGGTCGTTCGAGATCTCCTAGACAAAATGCAAAGGATAATAGAAAAAGGGAGAGTCCTGAGAGAGGCAGGCCTGTGTCACCCAAAAAGCAATCCCGCAGAGATGGCAGTCCTGATAGACATCGAAAACGGTCTACTAGTCGTGATAGGGAGAGAGGTCGTGATCATAAAGATAGATCCTTAGAGAGAAGAAAAGAAAAATATGATGATAAAGACAGGCACGATCGTAAAGATAGGGGTCGCGAGCGAAAAGAGGTTAAACGGGATGATAGTAAAAGAAGGGGTCGTGAACGAGGTCTTGGAGGAAGAAGTACAGGTGATAAAGGTTTAGAAAAACCAAATAAACCGATGGAGAGACTTCTTCCAAGACCTGAAGAACGTCTAGCTGCACTAGCTGCCATTTCAAATAGAACTCTGGAATCAGATAAAAACTCGAATACATCAAAAGATAGACAAGATACACATTCTGAACGCGGAGGTAGGAAGCCAGAACGACTTGAGAGAGAGCGGTCTAGTAAACGAGATCGCTTGGGCAGCAATGACAGAGAACAGGGTGAATACAGTATGGGTATTGACAGACAATATGATGATCATGGCATTGACCATTATGATAGAGTTAACGATCGTTATGATGGCGTTACTAGAGATGACGATCGGTCACCTGGCTATGGTGCACAAGGGCGAGAAAGACACTATGAAGCGCCATATGAAATTGCTGGTCCGCCGAGAGGATTTCCTGAAGAAGATGATAGAATCTATAATGAACATATGGGAGATCACAGAGATGTTGAAATGTGTTATAATGAAAGACGACCACATCGAGATCGTTCTTGGGAAGGACGTTCAGGCTCTCTTGATCGTGAACGTGCATACATGCATCGAAAAGATTGGGACAATGAAGATTATCATGCCAGCGGCGACTGGGGTCGAGATAGACACTGGCCTATTCATGATTCTCAGATGAGAGAATGGGGTGATAAAGATCCAGAAGATAATTGGCACCATAGAGGTCATCCTGGTCAACATCGTGGTCGAATACATGATGAGTATGGTCGAGGCATGAGATTAGATGTCGATCGCGGTGACAAACGTCGAAATGTTCGAAATGAACCTGATCAAAGTTCGAAAGATACCGGTCATCCTCAAACTTCTACAGCGTCTACTCGTCAAGAAACGGAAATTGAAGAAAAACCAATACCCGATGATCTTAGTGAAATCAGTGATGATCCTGATGATATATTAAATAGAGAAGATATGATGGATCAAAATAATGAAGAAGAAACTCAAAACCTGTCTGAAGAAGTGGCAATAAAGCCTGAAAGTATAGAAAAAGTGTCCGAGCAGGATGCAAGTGCTGTTGGAGACGAAAAAGAAATACAAGATAACAAAGATGATGAAGATGTTGCAAACTTAGACTTTGAGGAAATATCTGATGGAGAACTGGAAGAGGAAAAAACAAGAGCAGGATTAGGTGACGCACTTGGCGTCGATTGGGCAAGCTTAGTAGCGGATGTGCGGCGTCGGGAACAAACAACGCCTACAAGCGGAGCGCGTGAGCGCTGGCGACCAGAGAGGGTACTTGCACGAGTAGGTCTTTCTGTACATTTGGCTGGTAAAGATTTGGTGAGCGATATATTAAAAAACAACAAAGAATTACTCCAAGCTGAGAAGACTGCTCAAGATCAGAAATGCGAAAAATCTGAAAACTTGGTGCAAGAGAATGGTTGTCATGATATCCAAACAAGAAAGCTTGAAGATATTTCAGATATTCAGATTTTACATCCAGTAGCTTCTATACAGGTGGCTATGGAAAAGAGGAAACGTCAACGTGCTGTTTTGTTTGGATCAGGATGCGAGATTACCAGAGGTCTGAGTGCAAGGCGCGATTTGGCGTTACGCCGTTATTTATGTCACTTGCCAGCAACAGAACGAACTGGACAGTCTCGTGTTACACCACAGCCTTCACTGTTTGAGGCTGCTAAAGCTCTCTTGATGCGGGCTCCTGTCTCTGGTTAA

Protein

MSKQGKRKISVELPKTKDLSIRPSVFDRLGTKKSSSAKKTTEHCRQWAQHGSCAYGKSCKFASTHTLISPSKQRAAHKDNDQKRLVKDDGKTRLHSTVIVRSGQSPEGEIDNWDQNDLEYADTDVLEKRRQQLQRELELQMKMDSNKDMRKDKKKVVSSTSSSRSSSSSSVSSSSSDGSTSSSSSGRETRRKTKKGKLKRNSSSSSDGNIPTKKKYNVKSELSKKDKSDVKKNITKKDDRLIKKSDSSKKKSTSKTPIGKKSLSPGKKSGGTPPITSKTLIKSSSKHSKSPLRRDRNRSVSPHFRDKEKERERNKEKEREKDRDKDREKERDRNRARSRTPRKGRSRSPRQNAKDNRKRESPERGRPVSPKKQSRRDGSPDRHRKRSTSRDRERGRDHKDRSLERRKEKYDDKDRHDRKDRGRERKEVKRDDSKRRGRERGLGGRSTGDKGLEKPNKPMERLLPRPEERLAALAAISNRTLESDKNSNTSKDRQDTHSERGGRKPERLERERSSKRDRLGSNDREQGEYSMGIDRQYDDHGIDHYDRVNDRYDGVTRDDDRSPGYGAQGRERHYEAPYEIAGPPRGFPEEDDRIYNEHMGDHRDVEMCYNERRPHRDRSWEGRSGSLDRERAYMHRKDWDNEDYHASGDWGRDRHWPIHDSQMREWGDKDPEDNWHHRGHPGQHRGRIHDEYGRGMRLDVDRGDKRRNVRNEPDQSSKDTGHPQTSTASTRQETEIEEKPIPDDLSEISDDPDDILNREDMMDQNNEEETQNLSEEVAIKPESIEKVSEQDASAVGDEKEIQDNKDDEDVANLDFEEISDGELEEEKTRAGLGDALGVDWASLVADVRRREQTTPTSGARERWRPERVLARVGLSVHLAGKDLVSDILKNNKELLQAEKTAQDQKCEKSENLVQENGCHDIQTRKLEDISDIQILHPVASIQVAMEKRKRQRAVLFGSGCEITRGLSARRDLALRRYLCHLPATERTGQSRVTPQPSLFEAAKALLMRAPVSG

Uniprot

H9J0I6 A0A2A4JRA6 A0A194PNV9 A0A194R4W8 A0A2H1X0D4

Pubmed

19121390 26354079

EMBL

BABH01010389 NWSH01000765 PCG74349.1 KQ459598 KPI94668.1 KQ460779 + More
KPJ12285.1 ODYU01012454 SOQ58771.1

Proteomes

UP000005204 UP000218220 UP000053268 UP000053240

PRIDE

H9J0I6

Pfam

PF00642 zf-CCCH

Interpro

IPR040427 Flacc + More
IPR000571 Znf_CCCH

ProteinModelPortal

H9J0I6 A0A2A4JRA6 A0A194PNV9 A0A194R4W8 A0A2H1X0D4

KEGG

101744864 K22909 zinc finger CCCH domain-containing protein 13 | (RefSeq) peptidyl-prolyl cis-trans isomerase

GO

GO:0046872 GO:0080009 GO:0036396 GO:0006396 GO:0006351 GO:0032549 GO:0003824 GO:0006520 GO:0008483 GO:0006418 GO:0016507 GO:0048384

PANTHER

PTHR38563

Length:

1013

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00105

Exp number, first 60 AAs:

0.00014

Total prob of N-in:

0.00003

outside

1 - 1013

Pi

168.943517

Theta

172.196782

Tajima's D

-1.234163

CLR

0.616397

CSRT

0.0984950752462377

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics