SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02163  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA003018
Annotation
DNA-directed_RNA_polymerase_[Operophtera_brumata]
Full name
DNA-directed RNA polymerase subunit beta      
Location in the cell
Nuclear   Reliability : 3.491
 

Sequence

CDS
ATGTATGATACAGAAGATGATCAATACGAAGAGGAAGATGTGGAAATAACACCTGAGCTTTGGCAAGAAGCTTGTTGGATTGTCATCAACGCTTATTTCGATGAAAAAGGTCTAGTGAGACAGCAATTAGATAGCTTCGATGAATTTATTCAAATGTCGGTACAACGTATAGTTGAAGATTCTCCACCCATAGAATTACAAGCAGAAGCACAACATTTCTCTGGTGAGATGGAAACACCACCAAAATATCGTCTTAAATTTGACCAAATTTATTTATCTAAACCTACTCATTGGGAGAAAGATGGAGCTCCATCTCCCATGATGCCCAATGAAGCACGTCTTCGTAATTTAACATATTCGGCACCTTTATATGTTGATATTACAAAAACAATAGAGAAAGAACATGAGGATCCTATTGAAACGCAACATCAGAAAACATTTATTGGCAAGATTCCTATTATGCTTAGATCTACATATTGCTTACTAAACAGTTTGACTGACCGTGACTTGTCAGAATTGAATGAATGCCCCTTAGATCCTGGTGGTTACTTCATTATTAATGGATCAGAAAAAGTACTAATTGCACAGGAAAAAATGGCTACCAATACTGTCTATGTATTCAGCATGAAGGATGGCAAATATGCTTACAAAACAGAAATAAGATCATGTCTGGAACATAGTTCTAGACCGACATCTACATTATGGGTTAATATGATGGCTCGAGGAGGACAAAATATAAAGAAATCTGCTATTGGTCAAAGAATTATGGCAATTGTCCCATATATCAAACAAGACATACCTATAATGATTGTATTCAGAGCTTTAGGTTTTGTTGCTGATAGAGATATATTGGAACACATTATATATGATTTTGATGATCCAGAAATGATGGAAATGGTTAAGCCATCTCTTGATGAGGCTTTTGTCATTCAAGAACAAAATGTAGCACTCAATTTTATTGGAAGCCGAGGAGCACGCCCAGGTGTCACCAAAGAAAGACGTATTAAATATGCTAGAGAAATCTTACAAAAGGAAATGTTGCCACATGTTGGAGTATCAGATTTTTGTGAAACAAAAAAAGCTTATTTTCTAGGCTACATGGTACACAGATTATTATTAGCTGCTTTGGGTCGAAGAGAACTGGATGATAGAGATCATTATGGCAACAAAAGATTAGATTTAGCAGGACCACTTTTGGCTTTTCTATTTAGAGGCTTATTCAAAAATTTACTAAAAGAAGTCCGAATGTATGCTCAAAAATTTATTGATAGAGGAAAAGATTTCAACTTGGAACTTGCTATCAAAACAAAAATCATCACTGATGGTCTTCGTTATTCTTTGGCAACTGGTAATTGGGGTGACCAAAAGAAAGCTCATCAGGCCCGAGCTGGAGTATCTCAAGTGTTGAACAGATTAACTTTTGCATCTACTTTATCCCATTTAAGACGTGTCAATTCTCCAATTGGACGTGATGGTAAACTTGCTAAACCACGTCAATTGCACAATACTTTATGGGGTATGATTTGTCCTGCTGAAACTCCAGAGGGAGCTGCTGTTGGCTTAGTGAAGAATTTAGCATTAATGGCTTATATCTCAGTAGGAAGTCAACCTTCACCAATTTTGGAGTTCTTGGAAGAATGGTCAATGGAAAACTTGGAAGAAATTGCACCATCAGCTATAGCTGATGCCACAAAGATATTTGTGAATGGTTGTTGGGTAGGAATACACAGGGACCCTGAACAGTTGATGGCTACACTACGTAAACTAAGACGTCATATGGACATCATTGTCTCTGAAGTCAGTATGATTAGAGATATAAGAGACAGAGAAATCAGAATCTATACAGATGCAGGTAGAATTTGTAGGCCATTACTTATTGTCAATAATGGTGTCTTATTGTTGAAAAAGAAGCACATAGATGATTTAAAAGAAAAGGACTACAATAACTATGGTTGGCAAAATTTGGTGGCTAGTGGAGTAGTTGAATATATTGATACTTTGGAAGAAGAAACTGTGATGATTGCCATGAGTTTAGATGACTTGAATCAAGTTAAAGAATATGCATATTGTACTACTTATACACATTGTGAGATTCATCCTGCAATGATTCTGGGTGTCTGTGCGTCTATTATTCCATTCCCAGATCATAATCAAAGTCCCAGAAATACTTATCAAAGTGCTATGGGTAAACAAGCTATGGGAGTTTATATCACAAATTTCCATGTTAGAATGGATACACTGGCTCATGTTTTGTATTATCCTCACAAACCCCTGGTTACGACAAGATCTATGGAATACTTACGATTTAGAGAATTGCCAGCAGGAATTAACTCCATTGTTGCTATTCTTTGTTATACCGGATATAACCAAGAAGATAGTGTTATTTTGAATGCATCTGCTGTAGAGAGAGGATTCTTTAGATCCGTATTTTACCGTTCATACAAAGATTCTGAATCTAAAAGAAATGGAGAACAAGAAGAACAGTTTGAAAAACCAACCAGACAGACATGTCAGGGTATGAGGAATGCTCTGTATGACAAATTAGATGATGATGGTATTATTGCTCCTGGTATTAGAGTATCAGGTGATGATGTTGTCATAGGAAAAACTATAACTTTGCCAGAAAATGATGATGAGTTGGAAGGTACAACAAAACGATTTACAAAGCGAGATGCATCCACTTTCTTACGTAATAGTGAAACTGGAATTGTTGACCAAGTAATGTTAACATTAAATAGCGAAGGTTATAAATTTTGTAAAATTCGAGTCAGATCTGTACGCATCCCGCAAATTGGAGATAAGTTTGCTTCACGACATGGTCAAAAAGGAACATGTGGAATTCAATACAGGCAAGAAGATATGCCATTTACTTGCGAAGGTATAACACCAGATATCATTATTAATCCTCACGCTATCCCTTCACGTATGACAATTGGTCACTTGATTGAGTGTATTCAAGGGAAAGTATCTTCTAATAAGGGAGAGATCGGTGATGCAACCCCATTCAATGATGCTGTAAATGTGCAAAAAATATCATCTCTGTTACAAGATTATGGTTACCATCTACGTGGTAATGAAGTCATGTACAATGGGCATACAGGCCGTAAAATTAATGCGCAAGTTTTTTTGGGACCAACTTACTACCAACGTTTAAAGCACATGGTCGATGATAAAATTCATTCTAGAGCTAGAGGTCCAGTACAAATTCTAGTGAGACAGCCTATGGAAGGTAGGGCAAGAGATGGTGGATTACGTTTTGGTGAAATGGAACGTGATTGTCAGATTGCACACGGAGCTGCCCAATTTTTACGTGAACGTTTATTTGAAGTATCAGATCCTTACCGTATACACGTGTGTAATTTCTGCGGCCTGATCGCTATAGCTAATTTGCGTAACAATACATTTGAATGCAAAGGCTGCAAAAACAAAACTCAAATTTCGCAAATCCGTTTACCATATGCAGCCAAGTTACTATTCCAGGAACTAATGTCGATGAATATCGCTCCTAGACTAATGGTAGTGAGTTAA
Protein
MYDTEDDQYEEEDVEITPELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPPIELQAEAQHFSGEMETPPKYRLKFDQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIEKEHEDPIETQHQKTFIGKIPIMLRSTYCLLNSLTDRDLSELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQNIKKSAIGQRIMAIVPYIKQDIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRHMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVNNGVLLLKKKHIDDLKEKDYNNYGWQNLVASGVVEYIDTLEEETVMIAMSLDDLNQVKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRNGEQEEQFEKPTRQTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMVVS

Summary

Description
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
Catalytic Activity
a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)
Similarity
Belongs to the RNA polymerase beta chain family.
EC Number
2.7.7.6
EMBL
ODYU01009115    SOQ53303.1    KQ460709    KPJ12730.1    JTDY01002938    KOB70454.1    + More
AGBW02009947    OWR49513.1    AB597622    BAJ78728.1    BABH01010399    BABH01010400    AB597596    BAJ78702.1    AB597623    BAJ78729.1    AB597590    BAJ78696.1    AB597620    BAJ78726.1    AB597598    BAJ78704.1    AB597599    BAJ78705.1    AB597589    BAJ78695.1    AB597602    BAJ78708.1    AB597616    BAJ78722.1    AB597601    BAJ78707.1    AB597609    BAJ78715.1    AB597588    BAJ78694.1    AB597604    BAJ78710.1    NEVH01025129    PNF16024.1    AB597597    BAJ78703.1    AB597584    BAJ78690.1    KK868975    KDR17379.1    AB597600    BAJ78706.1    PYGN01000924    PSN39326.1    AB597605    BAJ78711.1    AB597603    BAJ78709.1    AB597595    BAJ78701.1    AJWK01016829    GEDC01015834    JAS21464.1    GEZM01010786    JAV93834.1    AB597587    BAJ78693.1    AB597610    BAJ78716.1    KQ971372    EFA09645.1    GDKW01000783    JAI55812.1    AB597586    BAJ78692.1    AB597624    BAJ78730.1    AB597618    BAJ78724.1    AB597621    BAJ78727.1    AB597614    BAJ78720.1    AB597613    BAJ78719.1    AXCN02001597    AB597617    BAJ78723.1    ACPB03016230    AB597606    BAJ78712.1    APCN01003235    AAAB01008888    EAA08858.4    AB597585    BAJ78691.1    GBBI01002129    JAC16583.1    DS235165    EEB12775.1    GGFK01004314    MBW37635.1    AB597594    BAJ78700.1    AB597607    BAJ78713.1    GGFL01004281    MBW68459.1    GGFL01004728    MBW68906.1    GGFK01004220    MBW37541.1    KB630879    KB632010    ERL83917.1    ERL87991.1    AB597625    BAJ78731.1    AB597611    BAJ78717.1    AXCM01006813    AB597591    BAJ78697.1    DS231971    EDS29768.1    JXJN01007687    AB597615    BAJ78721.1    AB597593    BAJ78699.1    AB597583    BAJ78689.1    KA647191    AFP61820.1    GAMC01004176    JAC02380.1    CH902617    EDV44029.1    JRES01001482    KNC22534.1    GBXI01001417    JAD12875.1    GDHF01023614    JAI28700.1    GAKP01003838    JAC55114.1    GFDL01014266    JAV20779.1    AB812019    BAO20864.1    APGK01059179    KB741292    ENN70449.1    OUUW01000013    SPP88085.1    AB597582    BAJ78688.1    CM000070    EAL27829.2    CH479179    EDW24606.1    CH954181    EDV48846.1    CH940650    EDW68290.1    CH933806    EDW14962.1    AE014297    AHN57322.1   
Pfam
PF00562   RNA_pol_Rpb2_6        + More
PF04561   RNA_pol_Rpb2_2
PF04565   RNA_pol_Rpb2_3
PF04567   RNA_pol_Rpb2_5
PF04563   RNA_pol_Rpb2_1
PF04560   RNA_pol_Rpb2_7
PF04566   RNA_pol_Rpb2_4
PF07774   EMC1_C
PF13360   PQQ_2
PF01746   tRNA_m1G_MT
Interpro
IPR007647   RNA_pol_Rpb2_5        + More
IPR015712   DNA-dir_RNA_pol_su2       
IPR007121   RNA_pol_bsu_CS       
IPR007642   RNA_pol_Rpb2_2       
IPR007120   DNA-dir_RNAP_su2_dom       
IPR037034   RNA_pol_Rpb2_2_sf       
IPR007644   RNA_pol_bsu_protrusion       
IPR007641   RNA_pol_Rpb2_7       
IPR014724   RNA_pol_RPB2_OB-fold       
IPR037033   DNA-dir_RNAP_su2_hyb_sf       
IPR007646   RNA_pol_Rpb2_4       
IPR007645   RNA_pol_Rpb2_3       
IPR011678   EMC1_C       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR002372   PQQ_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR028564   MT_TRM10-typ       
IPR038459   MT_TRM10-typ_sf       
IPR016009   tRNA_MeTrfase_TRMD/TRM10       
SUPFAM
SSF50998   SSF50998       
PDB
6EXV     E-value=0,     Score=5470

Ontologies

Topology

Length:
1175
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.23698
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00279
outside
1  -  1175
 
 

Population Genetic Test Statistics

Pi
237.694991
Theta
199.199288
Tajima's D
0.519925
CLR
0.231238
CSRT
0.523873806309684
Interpretation
Uncertain
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