Silkworm Genome Informatics Database

Gene

KWMTBOMO02162

Pre Gene Modal

BGIBMGA003146

Annotation

PREDICTED:_LIM_domain-containing_protein_jub_[Papilio_machaon]

Location

Bomo_Chr4(-):13001594-13010026 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.555

CDS

ATGGATTCTTCAAGGAGAAACAATACCGATGAACAACGGTGTGTACTTGGTCTTCAAGATTTGAAAATTTCAAAAAAAGTCGAGGATGGAACTGAGCAGGCGCAAGGGGCTACAACTTCGGCTCCGAGCCCTTTAGGCAAAAGTCGTCCGGTAGGCGCAATCGAGAGCTTCGTACTCGATAATACTCAGCAAAACACTCGTCAAGATTATAGTTTTTATGAACGATCAAATGTGATAGCTTCGTCCAAATTTGCGACTCCCAAGCGAGTAGAAACTATTGCATCTATCAATAAACGGGATATTAATACGACTGCTCTCCCTGCAAGCCCTACGAGATCAATCGATTCCTTATCACAAAGGTCGCTGAGTTATCAAACTGACGATCTTTACGAAATTCCTGGGAACCCTGGTGCGCAATACCCACCGCCTGTTTACGAAAACGTAGATTATTACGGTGAACAGCGTTCACCACAACCACCATATTATCACCAGCTCTACCAACAGGGTATACCACCTCCTGTGTCTGACGGATACTACGACACTCGGTACAGCAAAGCTCAACCGCAGGTGCCTGTTAACACGAAGTCTAAGGCTATTCCGGCACTATATGAAAATATGCTTAGCGCAGACAGTGATAAGAAAGGTGAATATAAAATACAACAAAATAATGACAGATTCATACAACAGGGTTCAGTACCCGGTCCACAAGTCCCTAACACTGGACTTAGCAGGAGCAATGTTAATTTAATAGGAGAGAGGGGTAAAGTAGACAAGCACCCTGCCTTGGCCTACAGTAAACACCAAGAAAATATTAGTGGTGATTATACAATCATGAGATCAGCTCCACCTAAATATACTGATGTTAGTGCTTTATTGAAAAGTGAAAACACAGTTAGTTTTGATGACAAAGTAGTGACAATTCCATCTACAGCGATTTATGCTTCAATAGCACCAAGTGCACAGAGACCTAAGGCCAATATAGCTACAGAAGTACAGACATGTGTGTCTAGTCCCAAATTTTTTCACCCCAAGCCTGTTACTGTAAATAATATGCCGAAAGACAAACCTTTGGTGACAAATGGAGCGTATAATTCCAAACCACTTGTAAACAGAATGCAAATAGTGGAAGATAATAATGGGTCTGATTATGTGTGTATGACAGGAGGACCTTCTGCCACACCCATACCTATATCCAATAAAGATAATACATCTCTAACTGCTGAATCTATTGGTTCTAGAACCTCTGAATCTGCTAGTTCTAGACACTCTGAATCTATCACTTCTCGAAATTTGGTTTCCGGTTTAACTTCTTTATGTTCACCCTCACAATCTCCTGCACCAAGTCCTACACCAAGCTCAGTTTCTCAAGTATCTGGAGGTTCCCGAGGATCTGGTGGTAGAGGCAAGAGTTTACTGCCATATAGTATAACCCCGCCCAGACCTACAGGTCCAACTGAGGCCCAGAGAAAAATAGAAGAGTTAACTAGGCAACTCGAAGAAGAAATGGAGAAACAGGATGAGGAGGGAGAGTACTTTGGTATATGCCACACATGCGGGGCTGGTGTAACTGGTGCTGGGCAAGCTTGTCAAGCTATGGGCAATCTGTACCACACTAATTGTTTTATCTGCTGTTCATGTGGTAGAGCACTTAGAGGGAAAGCTTTTTATAATGTACATGGCAAAGTGTACTGTGAAGAGGATTATTTGTATTCTGGATTCCAGCAAACAGCTGAAAAGTGTGCTATATGTGGTCATTTAATTATGGAAATGATACTCCAAGCTATGGGTAAATCATACCATCCCGGCTGCTTCCGCTGCTGCATATGCAATGAGTGCCTGGATGGTGTTCCATTTACTGTGGATGTAGACAATAAGATCTATTGCGTCAATGACTACCATCGGATGTTTGCCCCAAAATGTGCAAGTTGCGGAAAAGGCATAACACCAGTTGAAGGTACAGACGAGACAGTAAGAGTTGTCTCTATGGATAGAGATTTCCACGTTGATTGCTATATGTGTTGTGTATGCGGCATGCAACTCACCGATGAACCCGACAAACGCTGCTATCCTCTAGCAGGTAAATTAATGTGTCGTGCGTGTCACCTCGCCACAATCGGAGCAGCCACTGGACCGGGCCTTCCTCCCGCGCCTCATCTATCACCAGCCTCATACCAATACATGGGTTAA

Protein

MDSSRRNNTDEQRCVLGLQDLKISKKVEDGTEQAQGATTSAPSPLGKSRPVGAIESFVLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTTALPASPTRSIDSLSQRSLSYQTDDLYEIPGNPGAQYPPPVYENVDYYGEQRSPQPPYYHQLYQQGIPPPVSDGYYDTRYSKAQPQVPVNTKSKAIPALYENMLSADSDKKGEYKIQQNNDRFIQQGSVPGPQVPNTGLSRSNVNLIGERGKVDKHPALAYSKHQENISGDYTIMRSAPPKYTDVSALLKSENTVSFDDKVVTIPSTAIYASIAPSAQRPKANIATEVQTCVSSPKFFHPKPVTVNNMPKDKPLVTNGAYNSKPLVNRMQIVEDNNGSDYVCMTGGPSATPIPISNKDNTSLTAESIGSRTSESASSRHSESITSRNLVSGLTSLCSPSQSPAPSPTPSSVSQVSGGSRGSGGRGKSLLPYSITPPRPTGPTEAQRKIEELTRQLEEEMEKQDEEGEYFGICHTCGAGVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGKVYCEEDYLYSGFQQTAEKCAICGHLIMEMILQAMGKSYHPGCFRCCICNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCASCGKGITPVEGTDETVRVVSMDRDFHVDCYMCCVCGMQLTDEPDKRCYPLAGKLMCRACHLATIGAATGPGLPPAPHLSPASYQYMG

Uniprot

H9J0V9 A0A2H1WLJ4 A0A1E1W7C0 A0A0N1IGU3 A0A194PNW9 A0A212F715 + More
A0A0L7L4V9

Pubmed

19121390 26354079 22118469 26227816

EMBL

BABH01010401 ODYU01009115 SOQ53304.1 GDQN01008158 JAT82896.1 KQ460709 + More
KPJ12729.1 KQ459598 KPI94678.1 AGBW02009947 OWR49514.1 JTDY01002938 KOB70450.1

Proteomes

UP000005204 UP000053240 UP000053268 UP000007151 UP000037510

PRIDE

H9J0V9

Pfam

PF00412 LIM

Interpro

IPR001781 Znf_LIM

ProteinModelPortal

H9J0V9 A0A2H1WLJ4 A0A1E1W7C0 A0A0N1IGU3 A0A194PNW9 A0A212F715 + More
A0A0L7L4V9

PDB

2DLO E-value=7.10568e-17, Score=216

KEGG

101740467 K16682 LIM domain-containing protein | (RefSeq) LIM domain-containing protein jub

PATHWAY

04391 Hippo signaling pathway - fly - Bombyx mori (domestic silkworm)
04392 Hippo signaling pathway - multiple species - Bombyx mori (domestic silkworm)

GO

GO:0046872 GO:0008270 GO:0008152 GO:0007165 GO:0005694 GO:0003824 GO:0006520 GO:0008483 GO:0006418 GO:0016507 GO:0048384

Length:

728

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01075

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00119

outside

1 - 728

Pi

195.732327

Theta

217.246108

Tajima's D

0.450144

CLR

0.212678

CSRT

0.496525173741313

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics