SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02160
Pre Gene Modal
BGIBMGA003016
Annotation
PREDICTED:_uncharacterized_protein_LOC101746350_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.173 PlasmaMembrane   Reliability : 1.641
 

Sequence

CDS
ATGACTGCAGCAGCAAAAGGTGGCGGGAGACCGCGAGCTGTGCCGTTGCGCTTCAAATATTTGTTATTGCTCACAACTATCTTCGGTGGCTGCCTGATCCTCGTGACATTCAACTCACGCATAGAGATGTTCATTATGAACACTGACCCGTCCTGGAGTCATCGCTATGAAATAAGAGATTCTGAAGAAAGTTACACAATTAGAACGGAAGGATGCACGATACCAGGACTCAGGGCGTTTGATGAAAGCATTAAAAAATTCAAAGACTCAATTGAAACGATACAAAATCAAAGTGGAGGATACAATGTAATTGTGATGGGTATTGATGCTATTTCCAGGTTAAATTTCCACAGGACTATGCCTAAGACGCTGGCGTATCTCAAAAAGAAGGGAGGATTGGAGTTCCTTGGCTATAATAAAGTTGGTGACAACACATTTCCAAATTTAATACCTATGCTGTTGGGTATCAAAGATACAGAATTAAAAAAAACGTGTTGGCCGAACACAAAATCTACCTTTGATAATTGTCCATTTATTTGGGACTGGTATAAAGATGCTGGGTACTACACTGCATTTGGTGAAGACAGTGCCAGACTAGGAACATTTAACTACGAAAAACTCGGGTTTGCGGCTTCTCCCACGGATTATTACATTCACACGTTCATGTACGAAGCTGAAATTCACGTGGGGAACAAAAAAGATTTTAACGCTTTCATTTGCATGGGTGATAAATACTTTTATAAGGTTCTCCTAGACTATATAGAAAGTTTAACTCGCACATTGAAAAACGATAAGCTATTCGGGTTTTTTTGGGAAGTCACAATGAGCCACGACTATTTAAATTATCCTATGTTGATGGATGACGATTACGAACAATTTTTGAAACATCTCGATGACAGTAATTACTTAGATGACACGATTTTAATTTTACTTAGTGATCATGGAATTAGATGGGGTGAAATAAGATATACAAAACAAGGTAGATTAGAAGAAAGACTACCCTTGTTCCAAATATTAATACCACGTTCATTTCAAGATAACTTTCCCATGGCTTATGAAAATATTAAAAATAACAGAAAACGTCTCACTACGCCATTTGATTTACATGCAACACTTTCCGATTTGACGAATTTAAATTTCATAAAAGACGAACAAATTATTTTACGAAGCAAAGAAAATTACGGCTCCGATAGAAGTATAAGTCTATTTTTACCAATCCCAAATAATCGAACATGTAATACAGCTGCTATTGATGATCATTGGTGCACATGTCATAAGAGTAATAGGATTTCAATCAATAACAAAGACGTGTACGAGCCCGCCTTCGAACTTGTCAGAAATTTAAATTTGTTATTACAAGATCATTCCCAATGTGTCAAATTGAAGCTTTCGGAGATTCTTGAAGCCACGGAAATGGATGCAGGTGTCCCCGAAGTAGGTGAAGTCGGTTGGCAAGAGATTATGCTGGTGGTACGAACTACTCCCGGAGGAGGAGTCTTTGAAGCAACCCTTCGACGTAACAGTAAACAGGAGTGGTCTCTCGCCGGTACTGTCAGTCGACTTAACCTATACGGAGATCAAAGCCGTTGTGTTCATCATTATCAGTTAAAATTATATTGTTTCTGTGTCTAA
Protein
MTAAAKGGGRPRAVPLRFKYLLLLTTIFGGCLILVTFNSRIEMFIMNTDPSWSHRYEIRDSEESYTIRTEGCTIPGLRAFDESIKKFKDSIETIQNQSGGYNVIVMGIDAISRLNFHRTMPKTLAYLKKKGGLEFLGYNKVGDNTFPNLIPMLLGIKDTELKKTCWPNTKSTFDNCPFIWDWYKDAGYYTAFGEDSARLGTFNYEKLGFAASPTDYYIHTFMYEAEIHVGNKKDFNAFICMGDKYFYKVLLDYIESLTRTLKNDKLFGFFWEVTMSHDYLNYPMLMDDDYEQFLKHLDDSNYLDDTILILLSDHGIRWGEIRYTKQGRLEERLPLFQILIPRSFQDNFPMAYENIKNNRKRLTTPFDLHATLSDLTNLNFIKDEQIILRSKENYGSDRSISLFLPIPNNRTCNTAAIDDHWCTCHKSNRISINNKDVYEPAFELVRNLNLLLQDHSQCVKLKLSEILEATEMDAGVPEVGEVGWQEIMLVVRTTPGGGVFEATLRRNSKQEWSLAGTVSRLNLYGDQSRCVHHYQLKLYCFCV

Summary

EMBL
BABH01010402    KQ459598    KPI94681.1    KQ460709    KPJ12726.1    ODYU01009115    + More
SOQ53305.1    JTDY01002938    KOB70455.1    KPI94680.1    KPJ12727.1    AGBW02009947    OWR49516.1    NWSH01001661    PCG70510.1    GEZM01097358    JAV54257.1    GEZM01097357    JAV54258.1    GECU01011894    JAS95812.1    GECZ01024920    JAS44849.1    GECZ01018315    JAS51454.1    GECZ01020166    JAS49603.1    GECZ01027168    JAS42601.1    NEVH01004401    PNF39878.1    KK852595    KDR20616.1    PNF39881.1    PNF39876.1    ACPB03022605    ATLV01012268    KE524777    KFB36317.1    GBBI01004135    JAC14577.1    GEDC01027715    JAS09583.1    PYGN01000087    PSN54629.1    PSN54628.1    AAAB01008964    EAA12425.3    GBYB01013416    JAG83183.1    APCN01000793    AXCN02000805    GL435030    EFN74162.1    AXCM01001485    GL888053    EGI68682.1    CM000361    EDX04660.1    ADTU01008160    ADTU01008161    KK107109    EZA59268.1    DS231904    EDS45228.1    QOIP01000008    RLU19929.1    KQ414668    KOC64532.1    KQ976394    KYM93128.1    KQ981880    KYN33890.1    KK855154    PTY21180.1    CH480818    EDW52556.1    CM002910    KMY89691.1    ADMH02002157    ETN58209.1    KQ977866    KYM99247.1    AE014134    AY118291    AAF53064.1    AAM48320.1    JXUM01152784    KQ571544    KXJ68159.1    KQ435964    KOX67951.1    CH477624    EAT38139.1    AFH03648.1    AHN54345.1    CH954177    EDV58929.1    GGMR01016184    MBY28803.1    GL446957    EFN87029.1    EFN87031.1    OUUW01000004    SPP79466.1    KQ978910    KYN27535.1    CH916368    EDW03808.1    KQ971343    EFA03493.1    CH379060    KRT04264.1    KRT04265.1    KQ982268    KYQ58483.1    AJWK01006903    CM000157    EDW88041.1    EAL33849.3    JRES01001427    KNC22971.1    GL762576    EFZ21063.1    LBMM01006653    KMQ90425.1    CH479180    EDW29111.1    CP012523    ALC39230.1    CH477961    EAT34767.1    CH940649    EDW63923.1    KQ760158    OAD61696.1    CH964274    EDW85289.1    ABLF02039889    EFN74161.1    JXJN01003397    KQ434782    KZC04517.1    CCAG010007078   
Pfam
PF02995   DUF229        + More
PF06916   DUF1279
PF01556   DnaJ_C
PF00226   DnaJ
Interpro
IPR017850   Alkaline_phosphatase_core_sf        + More
IPR004245   DUF229       
IPR009688   DUF1279       
IPR008971   HSP40/DnaJ_pept-bd       
IPR001623   DnaJ_domain       
IPR018253   DnaJ_domain_CS       
IPR002939   DnaJ_C       
IPR036869   J_dom_sf       
SUPFAM
SSF53649   SSF53649        + More
SSF49493   SSF49493       
SSF46565   SSF46565       
Gene 3D

Ontologies

Topology

Length:
543
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
19.05686
Exp number, first 60 AAs:
19.0318
Total prob of N-in:
0.99711
POSSIBLE N-term signal
sequence
inside
1  -  19
TMhelix
20  -  37
outside
38  -  543
 
 

Population Genetic Test Statistics

Pi
150.745026
Theta
161.485629
Tajima's D
-0.651472
CLR
1.016747
CSRT
0.208089595520224
Interpretation
Uncertain
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