Silkworm Genome Informatics Database

Gene

KWMTBOMO02153

Pre Gene Modal

BGIBMGA003012

Annotation

PREDICTED:_whirlin_[Bombyx_mori]

Location

Bomo_Chr4(+):12825187-12877481 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.396

CDS

ATGAGGTCGGGGGAGGGCGGCGAGGGTTCCGAGCTGGCGGAGTTCGGTTCGCGGTGGCCGCCGCCCTACTCCTCAGCACAGGGCTACGGCTGGACACGCTCTGCCACGCCACAACATCCACCCGCACATCATCTAGCCAGGCATTCACGTTCGCAGCAGTGGCTGCAAGAGAATCGTCAGAGCTATGAGGCGGAAGACGCACGTGCTCGTGCCCGGGGTGGCGTGTACTACTCTCCTCCGGGCACATCGTACACAATTATCGAAAGGCCGGCATCATCGCACGGCCATCATGCTTCTTATTCGCATCACTACTCCGGGAAATTATCTAGAACACCTTACCTGGGATCAACTAACATAGCTAGCACTGCAGTGGGCGCAACAAGCTTACGAAACAGCACGAACCACTTGAGTGTGAGTAACGGCAAAAAGCGTCCGATATCGCCGGAGCAAGTTCTCAGGTTATTTGGTCAAGGAGGGGCTGCTGCTTTGGGCAAGGCACTGCCGCCTTCGCATCCACCAGCGCCTTTGCCTGCTCCAGCTCGAAGACACTCTCCTGCCAGTAGCCCAAGCAGCACTACACATCATGCGATCTATCGCGGAGGCGAGCGAGACCGGGAGAGGCCGTACTCGTCGGGAGGCGGAGCGCCGCCGCCTACGGAGCCGGCCACCCGCACTGTCACCATGAGCAGGGACCCCGCCGACTCGCACGGATTTGGCATATGCGTTAAAGGCGGAAAAGAAGCCGGCGTTTACATATCGCGGGTAGAGGAGGGTTCAGTGGCGGAACGAGCTGGCCTGCGTCCCGGGGACTCTATCCTGCAGGTCAATGGCACGCCGTTCTCCGGAATTTCGCACGAAGATGCACTCAAGATGCTTAAGTCGTGTCGTCAGTTGACGATGACGGTGCGAACGGCGGGTGCTCTGGTTGGGCGGGCCTCCTGCTCCTGGATGGACCGGTACGGACGACCTGCCTCTCCGCCTCCACTCCGACCCCCGCGATCTGCGAGTAAAGACCGTTCAGTGAGAAGGGTGGATTTATGTATAGAGCCAGGGCAATCGCTGGGACTAATGATCCGAGGCGGACTGGAGTACAATCTCGGCATCTACATTACTGGAGTTGACAAGGATTCAGTTGCAGACAGAGCTGGTCTCATGGTCGGCGATCAGATATTAGAAGTTAACGGGCAATCATTCGTGGATGTGACCCACGACGAGGCGGTGGCCCAGCTCAAGTATCACAAGCGCATGTCTCTGCTTGTGCGAGATGTCGGGAAAGTTCCGCACGCGTGTACAGCGTACGGTGAACGAGATCCAAATCCCAGGATAAGCGGCTGGGGCAAAAGAAGAGGGGCAGCTTCCGTGGCTGTGGAACAAAAGGCCCGGTCTCTCATACCGCAGAGCGATCTGCCTGCACTCGCGTACTATATGGAAGAATATGCTGCAAGAAGACTCAACCCCGACTCATTCCTTACAGTACTAAGAGATCTCTTAGATACGCCGCAGAAGTATACTTTACTTACCGAGATCCGAGAGTTTATGGTGCCGGAAGACAGACCACGCTTCGATGAGCTTGTTTATAGAAAAGGCGACGAATCTGGCGACTACCATCTGAAGCGTGGCAGCGAGCGTCACAACATGCTGCCATCATCGACGATGCACGAATTGCACGACCCGGAAGTAGCGGTGGAGGCTCCTCTCGTGGCCGATCACCGTTCTCCATCCGAGGATTCCGGATTGGGCTTGCCGCCGCATGATAATTACAGGAGCGGGCGCACGTGGCGGGCGGCAGACGCACCTCAGGACGACGACTTGGAGCCACCGCACGAGGTGATTTTGCCAGAATTACCTTCTACACATATCGAATTTACTGTCAACCACATTCATTTCTATATGCCTTCTATATAG

Protein

MRSGEGGEGSELAEFGSRWPPPYSSAQGYGWTRSATPQHPPAHHLARHSRSQQWLQENRQSYEAEDARARARGGVYYSPPGTSYTIIERPASSHGHHASYSHHYSGKLSRTPYLGSTNIASTAVGATSLRNSTNHLSVSNGKKRPISPEQVLRLFGQGGAAALGKALPPSHPPAPLPAPARRHSPASSPSSTTHHAIYRGGERDRERPYSSGGGAPPPTEPATRTVTMSRDPADSHGFGICVKGGKEAGVYISRVEEGSVAERAGLRPGDSILQVNGTPFSGISHEDALKMLKSCRQLTMTVRTAGALVGRASCSWMDRYGRPASPPPLRPPRSASKDRSVRRVDLCIEPGQSLGLMIRGGLEYNLGIYITGVDKDSVADRAGLMVGDQILEVNGQSFVDVTHDEAVAQLKYHKRMSLLVRDVGKVPHACTAYGERDPNPRISGWGKRRGAASVAVEQKARSLIPQSDLPALAYYMEEYAARRLNPDSFLTVLRDLLDTPQKYTLLTEIREFMVPEDRPRFDELVYRKGDESGDYHLKRGSERHNMLPSSTMHELHDPEVAVEAPLVADHRSPSEDSGLGLPPHDNYRSGRTWRAADAPQDDDLEPPHEVILPELPSTHIEFTVNHIHFYMPSI

Uniprot

H9J0H5 A0A2A4J5S9 A0A0L7KWS3 A0A1B0FLR3 A0A336MGU3 A0A1B0BKB0 + More
A0A1B0GNZ3 A0A1I8N4Z9 A0A1A9Y9U5 W8ACQ1 W8AIZ5 A0A1I8QAN6 A0A0L0C3L5 W8B777 A0A182FVX1 A0A1I8QAQ2 A0A1A9ZMV9 A0A1I8QAK6 A0A1I8QAK5 A0A034WPX9 A0A1I8QAN2 A0A1I8QAK3 A0A2M4CGQ7 A0A1B0CVS1 A0A182REK1 A0A1A9WCS0

Pubmed

19121390 26227816 25315136 24495485 26108605 25348373 + More

EMBL

BABH01010411 NWSH01003201 PCG66790.1 JTDY01004835 KOB67693.1 CCAG010022767 + More
UFQT01000840 SSX27547.1 JXJN01015857 JXJN01015858 JXJN01015859 JXJN01015860 AJVK01014771 AJVK01014772 AJVK01014773 AJVK01014774 GAMC01020865 JAB85690.1 GAMC01020868 JAB85687.1 JRES01000945 KNC26938.1 GAMC01020871 JAB85684.1 GAKP01001301 JAC57651.1 GGFL01000348 MBW64526.1 AJWK01031082 AJWK01031083 AJWK01031084 AJWK01031085 AJWK01031086

Proteomes

UP000005204 UP000218220 UP000037510 UP000092444 UP000092460 UP000092462 + More
UP000095301 UP000092443 UP000095300 UP000037069 UP000069272 UP000092445 UP000092461 UP000075900 UP000091820

PRIDE

H9J0H5

Pfam

PF00595 PDZ + More
PF17820 PDZ_6

Interpro

IPR001478   PDZ        + More
IPR036034   PDZ_sf
IPR041489   PDZ_6

SUPFAM

SSF50156 SSF50156

ProteinModelPortal

H9J0H5 A0A2A4J5S9 A0A0L7KWS3 A0A1B0FLR3 A0A336MGU3 A0A1B0BKB0 + More
A0A1B0GNZ3 A0A1I8N4Z9 A0A1A9Y9U5 W8ACQ1 W8AIZ5 A0A1I8QAN6 A0A0L0C3L5 W8B777 A0A182FVX1 A0A1I8QAQ2 A0A1A9ZMV9 A0A1I8QAK6 A0A1I8QAK5 A0A034WPX9 A0A1I8QAN2 A0A1I8QAK3 A0A2M4CGQ7 A0A1B0CVS1 A0A182REK1 A0A1A9WCS0

PDB

1UF1 E-value=8.32826e-23, Score=267

KEGG

101740884 K21879 whirlin | (RefSeq) whirlin

GO

GO:0007605 GO:0050953 GO:0005515 GO:0007264 GO:0007165 GO:0005694 GO:0003824 GO:0006520 GO:0008483 GO:0006418 GO:0016507 GO:0048384

Length:

634

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000580000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00018

outside

1 - 634

Pi

224.800347

Theta

185.10705

Tajima's D

0.679255

CLR

0.925395

CSRT

0.568871556422179

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics