Silkworm Genome Informatics Database

Gene

KWMTBOMO02145

Pre Gene Modal

BGIBMGA003154

Annotation

PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_CYLD_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr4(-):12736170-12738896 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.59

CDS

ATGTCTAAGCACTCCACAGCAACCATGCAGCGCAATTCACACAATGACAGAGTGAAATCTGCCAACCTTATAGCTCACTTGGCACCTGATAGACGTAGGATTAAATCAACATCAAGCAACAGTCCTATTCTTAGTACTGAAGAAAATCAACAAAAACCCAAAATGATACAAGAACCTAAAACTGTAGAAACTGGAATCTTAGTTGACGTGTGCAGCGCTGAACAACGCGAAAATGTCTACGATTCTCCAGCTTTGGGTTCACCTCGGGCTGTGGCGCCGATTCCAAAAGCTTCGGTAGATATTTTACAAGACGAAATCGGCGTGGGATCCCTGGTGGAGGTTGCTACAGATGTAGATCAACATTACTACGGAGTTGTGAGGTGGATTGGTATCATTGATGGTAAGTCTTAA

Protein

MSKHSTATMQRNSHNDRVKSANLIAHLAPDRRRIKSTSSNSPILSTEENQQKPKMIQEPKTVETGILVDVCSAEQRENVYDSPALGSPRAVAPIPKASVDILQDEIGVGSLVEVATDVDQHYYGVVRWIGIIDGKS

Uniprot

H9J0W7 A0A2H1X3R6 A0A212FA56 A0A0N1PHP3 A0A2A4IU95 A0A2A4IVT1 + More
A0A194PU87 A0A0L7L4Q4 A0A0K8TRZ1 A0A0T6B105 A0A1J1IE81 D6WM17

Pubmed

19121390 22118469 26354079 26227816 26369729 18362917 + More
19820115

EMBL

BABH01010420 BABH01010421 BABH01010422 ODYU01012783 SOQ59264.1 AGBW02009514 + More
OWR50617.1 KQ460709 KPJ12708.1 NWSH01006711 PCG63291.1 PCG63292.1 KQ459598 KPI94700.1 JTDY01003048 KOB70254.1 GDAI01000486 JAI17117.1 LJIG01016299 KRT81017.1 CVRI01000047 CRK98515.1 KQ971343 EFA04206.1

Proteomes

UP000005204 UP000007151 UP000053240 UP000218220 UP000053268 UP000037510 + More
UP000183832 UP000007266

PRIDE

H9J0W7

Pfam

PF01302 CAP_GLY + More
PF00443 UCH

Interpro

IPR000938   CAP-Gly_domain        + More
IPR038765   Papain-like_cys_pep_sf
IPR028889   USP_dom
IPR036859   CAP-Gly_dom_sf
IPR001394   Peptidase_C19_UCH

SUPFAM

SSF74924 SSF74924 + More
SSF54001 SSF54001

Gene 3D

2.30.30.190

ProteinModelPortal

H9J0W7 A0A2H1X3R6 A0A212FA56 A0A0N1PHP3 A0A2A4IU95 A0A2A4IVT1 + More
A0A194PU87 A0A0L7L4Q4 A0A0K8TRZ1 A0A0T6B105 A0A1J1IE81 D6WM17

KEGG

101741316 K08601 ubiquitin carboxyl-terminal hydrolase CYLD [EC:3.4.19.12] | (RefSeq) ubiquitin carboxyl-termi

PATHWAY

04013 MAPK signaling pathway - fly - Bombyx mori (domestic silkworm)

GO

GO:0005840 GO:0016787 GO:0036459 GO:0016579 GO:0004843 GO:0005829 GO:0070536

Length:

136

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00022

Exp number, first 60 AAs:

0

Total prob of N-in:

0.44714

outside

1 - 136

Pi

290.318261

Theta

209.537584

Tajima's D

0.663094

CLR

0.099347

CSRT

0.561321933903305

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics