Gene

KWMTBOMO02144

Annotation

Retrovirus-related_Pol_polyprotein_from_transposon_TNT_1-94_[Papilio_machaon]

Location

Bomo_Chr4(+):12728587-12730586      View in EpiBrowser

Full name

Retrovirus-related Pol polyprotein from transposon TNT 1-94      

Location in the cell

Nuclear   Reliability : 4.35

CDS

ATGTACAAACTCAATACTATTAAAGGCAGTGCTTATGCTGTTTCATGTAAAAGTAGGACAGATATTGTTACATGGCATAAGAGAATGGCACACTTGAATATAGCTGATGTGAAGAGGTTGGAGGTATGTGCAGATGGTATTACTATAACAAATAAAGAAATTGATGCAGTTTGTAAATCATGTTGTGAAGGAAAACAAACACGACTACTGTTTCCTCAATCTGGTTCGAGAGCAAGTACTTTACTAGAAATAATACATACTGATCTATGTGGTCCGATGGAGACACCATCAGTTGGTGGTGCAAGGTACTTTGTAACCTTTATAGATGATTATTCTCGCAAAGTATATGTGTACTTTCTAAAGAACAAAATGGATATTAAATCTGTGTTTGCACGATTTAAAAGTGAGGTGGAAAATGAGTTGGAAATGAAAATCAAAATGTTAAGAAGTGACAATGGAAAAGAATATTGTAATAAAGATTTCTCTGATTTTCTAGCAGCTTCCGGCATCAAGCACCAGACCAGCGCTCCCTACACGCCTGAACAAAATGGACTTTCTGAAAAAATGAACCGTAGTCTGGTGGAGCGAGCAAAATGCATGCTGTTTGAGGCAAAACTGCAGAAAATATATTGGGCCGAAGCAGTAGCTACTGCTGCTTATATCATTAATAGATCTCCATCACGAGTTCTGGCTGAGGTAACACCTTATGAAAAATGGACTAGTAAGAAACCAAACATTTCACACTTAAGGATTTTTGGCTCTAAGGCCATGGTACATGTTCCGAAGCAAAATCGTTTGAAATGGGATCGTAAATCACAAGAATTGGTTTTCGTAGGTTACTGTGAGAACACAAAGGGGTACAGATTAATTGATCCTAATAGTAAGAAGGCAGTGATTAGCAGGGATGTGATATTTATCGAAAGTTCCATAGATAATGTCACTCAGAAACCTAGCCTAAAGCCTCAGCTTATTACTTTACCTCTCAGTTCAAGTTTAAGTCGCGCACAAAAAAGCAATGAAATATCTTTGATGCCGGTTGATGATAGCTCTCAAACAGACACTGAAAATGTCACATCAACACCTTCAAGTACTGATACTTCTTTTGACAGCTGTGTGGTGAACAGAAATGATGATGAAACTTATTATCCCAGCTCAAGTGACAGTGATAACAGTTTCGGGAGGAATATCACTCTGAGATCACATCAAAAACGTAATGAGAAAAATAATAATTTAATGTGTGTTCAGATTATAGATCCACTGAATGTCAAGGAAGCCTTGTCGGGCCCTGATGCCCAACATTGGAAACGAGCAATGGATGAGGAGTATCAGTCCTTATTGGAAAATAATACGTGGGAAATGACTTCTCTACCAGCTAACAAGCGCCCTATACCATGTAAGTGGGTGTTCAAGAGAAAGACCAATGAAAATAGAGAAATAATAAAATACAAGGCACGTCTTGTAATTAAAGGATGTTCACAAAAACCTGGAATAGACTACACTGAAGTATTTTCACCGGTAGTAAGACATGCTTCATTGAGGTATTTGTTTGCCCTGGCAGTGAAATATGATTTAAATATATGTCAGATGGATGCTGTGTCAGCTTTTCTTCAAGGTGATATTGAAGAGGAAATTTACATGATGCAGCCACCTATGTATGAAAATGGAGATAAACGGTCTATGTCGATGACCTGA

Protein

MYKLNTIKGSAYAVSCKSRTDIVTWHKRMAHLNIADVKRLEVCADGITITNKEIDAVCKSCCEGKQTRLLFPQSGSRASTLLEIIHTDLCGPMETPSVGGARYFVTFIDDYSRKVYVYFLKNKMDIKSVFARFKSEVENELEMKIKMLRSDNGKEYCNKDFSDFLAASGIKHQTSAPYTPEQNGLSEKMNRSLVERAKCMLFEAKLQKIYWAEAVATAAYIINRSPSRVLAEVTPYEKWTSKKPNISHLRIFGSKAMVHVPKQNRLKWDRKSQELVFVGYCENTKGYRLIDPNSKKAVISRDVIFIESSIDNVTQKPSLKPQLITLPLSSSLSRAQKSNEISLMPVDDSSQTDTENVTSTPSSTDTSFDSCVVNRNDDETYYPSSSDSDNSFGRNITLRSHQKRNEKNNNLMCVQIIDPLNVKEALSGPDAQHWKRAMDEEYQSLLENNTWEMTSLPANKRPIPCKWVFKRKTNENREIIKYKARLVIKGCSQKPGIDYTEVFSPVVRHASLRYLFALAVKYDLNICQMDAVSAFLQGDIEEEIYMMQPPMYENGDKRSMSMT

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Keywords

Aspartyl protease   Complete proteome   Endonuclease   Hydrolase   Metal-binding   Nuclease   Nucleotidyltransferase   Protease   Reference proteome   RNA-directed DNA polymerase   Transferase   Transposable element   Zinc   Zinc-finger  

Feature

chain  Retrovirus-related Pol polyprotein from transposon TNT 1-94

Uniprot

A0A194RJV9   A0A2A4JRI1   A0A2A4J959   A0A355BEE2   A0A2A4JA71   A0A1W7R664   + More
A0A034VP70   A0A0A1WXQ3   A0A0J7KG03   A0A1W7R6J6   A0A1W7R6K6   A0A194RU38   A0A0A9XNJ4   A0A0A9XIP2   A0A0A9XD75   A0A0A9XFC8   A0A0N1ICY1   A0A1Y1NAZ7   A0A1Y1LYU4   A0A1Y1N668   A0A0V0T3I0   A0A0A9XY84   A0A0V0TUP0   A0A2J7R8R7   A0A146LH62   A0A2J7Q1Z2   A0A0A9WPH5   A0A2J7R668   A0A2J7R8S8   A0A1Y1N664   W8B7K5   A0A2J7RKJ6   A0A2J7R937   A0A1Y1N932   A0A0A9WRE3   P10978   A0A2B4R8Q4   A0A251TCA0   A0A0K8U6S2   A0A251T6N3   Q9AU17   A0A224XA26   A0A251T2S6   A0A0A1XLZ7   W8AQ86   B6V6Z8   W8BWJ0   A0A251UIF2   A0A0A9XV68   A0A1W7R6K4   A0A2K3MYT4   A0A251SKN6   A0A1W7R6G9   A0A2N9ETM3   K7J5Z3   A0A2N9IWX1   K4BPP9   H3H839   A0A0K8U8C3   W8BEX4   A0A151R6U8   A0A371G332   A0A1B6E9D0   A0A0K8W4G0   A0A2N9EZ52   A0A0A9XBM0   K4D931   A0A0K8U6X2   A0A151R2G6   A0A1Y1N3X2   A0A151SDY6   A0A0K8WJW9   A0A151TKT1   B8YLY4   A0A2N9ELX4   A0A151RJN4   A0A0J7K7B7   A0A0V0UX12   A0A1W7R6H7   B8YLY3   A0A0J7K6W1   B8YLY6   A0A2P6UYT4   A0A2N9GK87   Q5MG99   A0A2N9IPG8   A0A182GFZ6   A0A085NQR3   A0A085MSF4   A0A151THM1   A0A2J7PSB2   A0A0J7K9H9   A0A085N9K0   A0A3L6PQQ4   A0A1W7R6C8   Q6L3N8   A0A2N9H5C1   A0A2M4CJW8   W8C3B0   A0A0P6IXK4  

Pubmed

26354079    30148503    25348373    25830018    25401762    28004739    + More
26823975    24495485    2536143    28538728    16040666    24500806    28382043    20075255    16946064    22057054    19656907    29178410    26483478    24929829    30683860    26999592   

EMBL

KQ460297    KPJ16236.1    NWSH01000816    PCG74073.1    NWSH01002292    PCG68657.1    + More
PCG68658.1    DNYX01000353    HBK84078.1    PCG68656.1    GEHC01000987    JAV46658.1    GAKP01015352    JAC43600.1    GBXI01011094    JAD03198.1    LBMM01008124    KMQ89126.1    GEHC01000868    JAV46777.1    GEHC01000867    JAV46778.1    KQ459875    KPJ19636.1    GBHO01024949    JAG18655.1    GBHO01024951    JAG18653.1    GBHO01024947    JAG18657.1    GBHO01024950    JAG18654.1    KQ460882    KPJ11482.1    GEZM01011855    JAV93396.1    GEZM01045163    GEZM01045162    JAV77888.1    GEZM01011856    JAV93393.1    JYDJ01000808    KRX33413.1    GBHO01019781    JAG23823.1    JYDJ01000136    KRX42725.1    NEVH01006721    PNF37231.1    GDHC01011760    JAQ06869.1    NEVH01019375    PNF22597.1    GBHO01033237    JAG10367.1    NEVH01006980    PNF36330.1    PNF37230.1    GEZM01011859    JAV93384.1    GAMC01020736    JAB85819.1    NEVH01002725    PNF41351.1    PNF37343.1    GEZM01011857    JAV93390.1    GBHO01033235    JAG10369.1    X13777    LSMT01001145    PFX12880.1    CM007900    OTG08534.1    GDHF01030254    JAI22060.1    OTG06758.1    AF279585    AAK29467.1    GFTR01008662    JAW07764.1    CM007901    OTG04806.1    GBXI01002679    JAD11613.1    GAMC01018338    JAB88217.1    FJ238509    ACI62137.1    GAMC01008929    JAB97626.1    CM007895    OTG22666.1    GBHO01019780    JAG23824.1    GEHC01000950    JAV46695.1    ASHM01014005    PNX95963.1    CM007903    OTF99426.1    GEHC01000897    JAV46748.1    OIVN01000313    SPC78143.1    OIVN01006239    SPD28653.1    DS567278    GDHF01029405    JAI22909.1    GAMC01011082    JAB95473.1    KQ484038    KYP38095.1    QJKJ01006899    RDX84970.1    GEDC01002834    JAS34464.1    GDHF01006360    JAI45954.1    OIVN01000423    SPC79931.1    GBHO01026200    JAG17404.1    GDHF01029905    JAI22409.1    KQ484186    KYP36645.1    GEZM01013472    GEZM01013471    GEZM01013470    JAV92539.1    KQ483417    KYP53032.1    GDHF01000873    JAI51441.1    CM003607    KYP67664.1    FJ544853    ACL97384.1    OIVN01000172    SPC75650.1    KQ483702    KYP42748.1    LBMM01012669    KMQ86061.1    JYDN01000136    KRX55804.1    GEHC01000879    JAV46766.1    FJ544851    ACL97383.1    LBMM01012645    KMQ86082.1    FJ544856    ACL97386.1    LHPF02000284    PSC67003.1    OIVN01002345    SPD02856.1    AY830138    AAV88069.1    OIVN01006155    SPD26398.1    JXUM01060983    KQ562129    KXJ76624.1    KL367480    KFD71809.1    KL367691    KFD60150.1    CM003608    KYP66486.1    NEVH01021933    PNF19227.1    LBMM01011374    KMQ86881.1    KL367527    KFD66146.1    PQIB02000016    RLM60992.1    GEHC01000927    JAV46718.1    AC149291    AAT38758.1    OIVN01002828    SPD06754.1    GGFL01001458    MBW65636.1    GAMC01006169    JAC00387.1    GDUN01000214    JAN95705.1   

Proteomes

UP000053240    UP000218220    UP000036403    UP000055048    UP000235965    UP000084051    + More
UP000225706    UP000215914    UP000236291    UP000002358    UP000005238    UP000075243    UP000257109    UP000054681    UP000239649    UP000069940    UP000249989    UP000275267   

Pfam

PF07727   RVT_2        + More
PF00665   rve
PF00098   zf-CCHC
PF13961   DUF4219
PF13976   gag_pre-integrs
PF08370   PDR_assoc
PF00005   ABC_tran
PF01061   ABC2_membrane
PF00078   RVT_1
PF13696   zf-CCHC_2

Interpro

IPR039537   Retrotran_Ty1/copia-like        + More
IPR001584   Integrase_cat-core       
IPR013103   RVT_2       
IPR001878   Znf_CCHC       
IPR012337   RNaseH-like_sf       
IPR036875   Znf_CCHC_sf       
IPR036397   RNaseH_sf       
IPR025724   GAG-pre-integrase_dom       
IPR025314   DUF4219       
IPR011009   Kinase-like_dom_sf       
IPR027417   P-loop_NTPase       
IPR003439   ABC_transporter-like       
IPR013525   ABC_2_trans       
IPR013581   PDR_assoc       
IPR000477   RT_dom       
IPR009056   Cyt_c-like_dom       
IPR025829   Zn_knuckle_CX2CX3GHX4C       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       
SSF56112   SSF56112       
SSF52540   SSF52540       

Gene 3D

3.30.420.10    

ProteinModelPortal

A0A194RJV9   A0A2A4JRI1   A0A2A4J959   A0A355BEE2   A0A2A4JA71   A0A1W7R664   + More
A0A034VP70   A0A0A1WXQ3   A0A0J7KG03   A0A1W7R6J6   A0A1W7R6K6   A0A194RU38   A0A0A9XNJ4   A0A0A9XIP2   A0A0A9XD75   A0A0A9XFC8   A0A0N1ICY1   A0A1Y1NAZ7   A0A1Y1LYU4   A0A1Y1N668   A0A0V0T3I0   A0A0A9XY84   A0A0V0TUP0   A0A2J7R8R7   A0A146LH62   A0A2J7Q1Z2   A0A0A9WPH5   A0A2J7R668   A0A2J7R8S8   A0A1Y1N664   W8B7K5   A0A2J7RKJ6   A0A2J7R937   A0A1Y1N932   A0A0A9WRE3   P10978   A0A2B4R8Q4   A0A251TCA0   A0A0K8U6S2   A0A251T6N3   Q9AU17   A0A224XA26   A0A251T2S6   A0A0A1XLZ7   W8AQ86   B6V6Z8   W8BWJ0   A0A251UIF2   A0A0A9XV68   A0A1W7R6K4   A0A2K3MYT4   A0A251SKN6   A0A1W7R6G9   A0A2N9ETM3   K7J5Z3   A0A2N9IWX1   K4BPP9   H3H839   A0A0K8U8C3   W8BEX4   A0A151R6U8   A0A371G332   A0A1B6E9D0   A0A0K8W4G0   A0A2N9EZ52   A0A0A9XBM0   K4D931   A0A0K8U6X2   A0A151R2G6   A0A1Y1N3X2   A0A151SDY6   A0A0K8WJW9   A0A151TKT1   B8YLY4   A0A2N9ELX4   A0A151RJN4   A0A0J7K7B7   A0A0V0UX12   A0A1W7R6H7   B8YLY3   A0A0J7K6W1   B8YLY6   A0A2P6UYT4   A0A2N9GK87   Q5MG99   A0A2N9IPG8   A0A182GFZ6   A0A085NQR3   A0A085MSF4   A0A151THM1   A0A2J7PSB2   A0A0J7K9H9   A0A085N9K0   A0A3L6PQQ4   A0A1W7R6C8   Q6L3N8   A0A2N9H5C1   A0A2M4CJW8   W8C3B0   A0A0P6IXK4  

PDB

4NYF     E-value=0.00377718,     Score=97

KEGG

105841774    no KO assigned | (RefSeq) retrovirus-related Pol polyprotein from transposon TNT 1-94

GO

GO:0015074   GO:0000943   GO:0003676   GO:0008270   GO:0003964   GO:0004190   GO:0004519   GO:0005524   GO:0016021   GO:0016887   GO:0020037   GO:0009055   GO:0005840   GO:0006412   GO:0003824   GO:0006520   GO:0008483   GO:0006418   GO:0016507   GO:0048384  

PANTHER

PTHR11439  

Length:

563

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00579

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00388

outside

1  -  563

 

 

Pi

104.220958

Theta

41.901046

Tajima's D

4.613528

CLR

0

CSRT

0.999850007499625

Interpretation

Uncertain