Gene

KWMTBOMO02143

Pre Gene Modal

BGIBMGA003154

Annotation

PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_CYLD_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr4(-):12722184-12735056      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.889

CDS

ATGTTCACCTTTACAAGCGTGTTCGACGCGTTGTTGTACAGGCCACCGGAACCAGAGGATTCACCGCATTATTCGGAAGTGCAGCGTGTACTGCGCGAAGAAATCGTGAACCCGCTCCGTAAGCACGGGTACGTCCGCGCCGACAGGGTTATGAAACTGCGCACGCTGCTCGAACGACTCTCCGATGTGCCGGGACTCACTTCTGAAGAAAAGGATCCGGAAGAGTTCTTGAACGGCTTAGTGGCACAGATCTTACGGGCCGAACCTTTTCTCAAATTATCATCAGGCCAAGAAGCGTTCTGCTATCAGCTCTTTGTCGAAAAGGATGAACACGTCTCCCTGCCGACGGTGCAGCAACTGCTCGAACAGTCGTTTGCTACTTCGGGTGTGAAACTCAGCGAGGTCCCGGCCGCTTTCATAATCCAAATGCCGAGGTTCGGGAAACAATACAAACTGTATCAGCGTGTAATGCCATCGCCGTTATTGGACGTCACTGATCTCATTGAAGGACTTCCGCGGCAGTGCGCTGTGTGCGGCGGGCTGGCGCGCTGGGAGTGTGCGGAGTGCGCCCGCGGCGCCGCGCTCGACGCCGCCGCGCTCTGCCGCGCCTGTCTGCGGCGCGCGCACTCGACACGCCAGCACAAGGCAACGCCACTGACGGTATTCGAAGAGTACTCCAGTATACTCGAGTCATGTCCCGTCCCGCGCGTGTACATGGAACTGTTCGCGGTGCTCTGCATTGAGACCAGTCATTACGTGGCCTTCGTGAAAGCCGGCGTCGGTCACGATGCACCGTGGTGCTTCTTCGATTCCATGGCCGACAGAAAAGGCGAGCGCGACGGGTACAACATCCCGGAAATAGTGAGTATGAAGGAGGTAGGCGCGTGGCTGAGCGAGGCGGACCCCGCGCCCCGCGCGCCGCCCCTCGCGCGCCGCCTGCTCGCCGACGCCTACATGTGTTTCTACCGCAGCCCCGACGTCGCCATGTATCGCTGA

Protein

MFTFTSVFDALLYRPPEPEDSPHYSEVQRVLREEIVNPLRKHGYVRADRVMKLRTLLERLSDVPGLTSEEKDPEEFLNGLVAQILRAEPFLKLSSGQEAFCYQLFVEKDEHVSLPTVQQLLEQSFATSGVKLSEVPAAFIIQMPRFGKQYKLYQRVMPSPLLDVTDLIEGLPRQCAVCGGLARWECAECARGAALDAAALCRACLRRAHSTRQHKATPLTVFEEYSSILESCPVPRVYMELFAVLCIETSHYVAFVKAGVGHDAPWCFFDSMADRKGERDGYNIPEIVSMKEVGAWLSEADPAPRAPPLARRLLADAYMCFYRSPDVAMYR

Uniprot

H9J0W7   A0A2H1X3R6   A0A212FA56   S4NU76   A0A194PU87   A0A067QYE6   + More
A0A2J7RPH5   A0A1B0DDE2   A0A2A3ELU0   A0A1Q3FED6   A0A0L7R5H6   A0A1Q3FEH3   A0A182VHL1   E2AA46   A0A0M9A063   E2BTZ0   A0A182U484   Q16JP2   B0WCR0   U5EQZ8   A0A310SFS5   A0A1B6EF51   A0A1Q3FY13   A0A1W4X3K4   A0A1L8DTE5   A0A154P507   A0A088A1Q0   A0A1L8DT92   A0A1L8DTI0   A0A158NKM7   A0A182JID9   F4WWF9   Q7Q4I4   A0A0L0C262   A0A0K8TRZ1   A0A151IEM5   A0A151WRM3   A0A0K8W4Q3   A0A195BM04   A0A195DG65   A0A0J7KWP2   A0A195FB26   E9IRE5   A0A2J7RPH1   A0A034WPG3   A0A1S4GY65   A0A182IC39   A0A1Q3G3D5   A0A182G653   E0VY65   A0A2C9GNH8   A0A3F2YVE2   A0A1S4GYW0   D6WM17   A0A0K8UCD1   A0A0A1WMP2   J9HTQ6   B4JPQ2   W8B549   A0A084VMC0   A0A1Y1N7I8   A0A2J7RPH2   A0A0A9W6M5   A0A0Q9WKJ9   A0A0A9VY08   A0A0T6B105   A0A2M3Z114   A0A034WKH7   W8BSM4   A0A224X7T7   W8B140   A0A1I8M7U3   A0A069DXJ4   A0A1W4UT11   T1PA88   A0A023EWL8   A0A023EXE6   A0A0V0G8Q6   A0A0Q9XGE7   A0A1W4UFI6   Q8IPC3   A0A1W4UUR0   A0A0J9R000   A0A0C9QF68   B3MPQ3   Q8IPC5   A0A1I8PG62   A0A1I8PG81   B4NZ87   B4HWJ8   B4Q8S7   A0A1B6I9M9   A0A1I8PFZ2   A0A1I8PG54   K7ISP3   A0A0A1XJ56   A0A1I8M7U8   E9FZG4   Q8SYF0   A0A1I8M7V3  

Pubmed

19121390    22118469    23622113    26354079    24845553    20798317    + More
17510324    21347285    21719571    12364791    26108605    26369729    21282665    25348373    26483478    20566863    18362917    19820115    25830018    17994087    24495485    24438588    28004739    25401762    25315136    26334808    24945155    25474469    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    22936249    18057021    26109357    26109356    17550304    20075255    21292972   

EMBL

BABH01010420    BABH01010421    BABH01010422    ODYU01012783    SOQ59264.1    AGBW02009514    + More
OWR50617.1    GAIX01013422    JAA79138.1    KQ459598    KPI94700.1    KK852829    KDR15361.1    NEVH01001358    PNF42737.1    AJVK01014454    AJVK01014455    KZ288215    PBC32763.1    GFDL01009124    JAV25921.1    KQ414652    KOC66135.1    GFDL01009099    JAV25946.1    GL438029    EFN69684.1    KQ435803    KOX73129.1    GL450531    EFN80889.1    CH477997    EAT34520.2    DS231890    EDS43786.1    GANO01003980    JAB55891.1    KQ764881    OAD54320.1    GEDC01000753    JAS36545.1    GFDL01002597    JAV32448.1    GFDF01004403    JAV09681.1    KQ434819    KZC06932.1    GFDF01004402    JAV09682.1    GFDF01004404    JAV09680.1    ADTU01018888    GL888406    EGI61501.1    AAAB01008964    EAA12869.4    JRES01000985    KNC26438.1    GDAI01000486    JAI17117.1    KQ977862    KYM99265.1    KQ982805    KYQ50516.1    GDHF01006267    JAI46047.1    KQ976439    KYM86759.1    KQ980886    KYN11883.1    LBMM01002347    KMQ94947.1    KQ981693    KYN37825.1    GL765107    EFZ16872.1    PNF42736.1    GAKP01002867    JAC56085.1    APCN01000774    GFDL01000728    JAV34317.1    JXUM01147376    JXUM01147377    KQ570354    KXJ68380.1    DS235843    EEB18321.1    AXCM01006451    KQ971343    EFA04206.1    GDHF01028091    GDHF01023244    GDHF01015980    JAI24223.1    JAI29070.1    JAI36334.1    GBXI01014356    JAC99935.1    EJY58028.1    CH916372    EDV98882.1    GAMC01014342    JAB92213.1    ATLV01014585    KE524975    KFB39114.1    GEZM01010738    JAV93863.1    PNF42735.1    GBHO01043079    JAG00525.1    CH940649    KRF81695.1    GBHO01043080    GBRD01008263    JAG00524.1    JAG57558.1    LJIG01016299    KRT81017.1    GGFM01001459    MBW22210.1    GAKP01002866    JAC56086.1    GAMC01014341    JAB92214.1    GFTR01007989    JAW08437.1    GAMC01014343    JAB92212.1    GBGD01000477    JAC88412.1    KA645691    AFP60320.1    GAPW01000115    JAC13483.1    GBBI01004794    JAC13918.1    GECL01002365    JAP03759.1    CH933807    KRG03838.1    AE014134    AAN10741.1    CM002910    KMY89476.1    GBYB01002034    JAG71801.1    CH902620    EDV32301.1    KPU73894.1    BT025222    AAN10738.1    AAN10739.1    ABF17913.1    CM000157    EDW88782.1    KRJ98032.1    CH480818    EDW52393.1    CM000361    EDX04492.1    KMY89474.1    GECU01024089    JAS83617.1    AAZX01007990    GBXI01015416    GBXI01003729    JAC98875.1    JAD10563.1    GL732528    EFX87054.1    AY071592    AAL49214.1   

Proteomes

UP000005204    UP000007151    UP000053268    UP000027135    UP000235965    UP000092462    + More
UP000242457    UP000053825    UP000075903    UP000000311    UP000053105    UP000008237    UP000075902    UP000008820    UP000002320    UP000192223    UP000076502    UP000005203    UP000005205    UP000075880    UP000007755    UP000007062    UP000037069    UP000078542    UP000075809    UP000078540    UP000078492    UP000036403    UP000078541    UP000075840    UP000069940    UP000249989    UP000009046    UP000075883    UP000007266    UP000001070    UP000030765    UP000008792    UP000095301    UP000192221    UP000009192    UP000000803    UP000007801    UP000095300    UP000002282    UP000001292    UP000000304    UP000002358    UP000000305   

PRIDE

H9J0W7    Q8IPC3    Q8IPC5    Q8SYF0   

Pfam

PF01302   CAP_GLY        + More
PF00443   UCH

Interpro

IPR000938   CAP-Gly_domain        + More
IPR038765   Papain-like_cys_pep_sf       
IPR028889   USP_dom       
IPR036859   CAP-Gly_dom_sf       
IPR001394   Peptidase_C19_UCH       

SUPFAM

SSF74924   SSF74924        + More
SSF54001   SSF54001       

Gene 3D

2.30.30.190    

ProteinModelPortal

H9J0W7   A0A2H1X3R6   A0A212FA56   S4NU76   A0A194PU87   A0A067QYE6   + More
A0A2J7RPH5   A0A1B0DDE2   A0A2A3ELU0   A0A1Q3FED6   A0A0L7R5H6   A0A1Q3FEH3   A0A182VHL1   E2AA46   A0A0M9A063   E2BTZ0   A0A182U484   Q16JP2   B0WCR0   U5EQZ8   A0A310SFS5   A0A1B6EF51   A0A1Q3FY13   A0A1W4X3K4   A0A1L8DTE5   A0A154P507   A0A088A1Q0   A0A1L8DT92   A0A1L8DTI0   A0A158NKM7   A0A182JID9   F4WWF9   Q7Q4I4   A0A0L0C262   A0A0K8TRZ1   A0A151IEM5   A0A151WRM3   A0A0K8W4Q3   A0A195BM04   A0A195DG65   A0A0J7KWP2   A0A195FB26   E9IRE5   A0A2J7RPH1   A0A034WPG3   A0A1S4GY65   A0A182IC39   A0A1Q3G3D5   A0A182G653   E0VY65   A0A2C9GNH8   A0A3F2YVE2   A0A1S4GYW0   D6WM17   A0A0K8UCD1   A0A0A1WMP2   J9HTQ6   B4JPQ2   W8B549   A0A084VMC0   A0A1Y1N7I8   A0A2J7RPH2   A0A0A9W6M5   A0A0Q9WKJ9   A0A0A9VY08   A0A0T6B105   A0A2M3Z114   A0A034WKH7   W8BSM4   A0A224X7T7   W8B140   A0A1I8M7U3   A0A069DXJ4   A0A1W4UT11   T1PA88   A0A023EWL8   A0A023EXE6   A0A0V0G8Q6   A0A0Q9XGE7   A0A1W4UFI6   Q8IPC3   A0A1W4UUR0   A0A0J9R000   A0A0C9QF68   B3MPQ3   Q8IPC5   A0A1I8PG62   A0A1I8PG81   B4NZ87   B4HWJ8   B4Q8S7   A0A1B6I9M9   A0A1I8PFZ2   A0A1I8PG54   K7ISP3   A0A0A1XJ56   A0A1I8M7U8   E9FZG4   Q8SYF0   A0A1I8M7V3  

PDB

2VHF     E-value=1.68374e-77,     Score=735

KEGG

101741316    K08601 ubiquitin carboxyl-terminal hydrolase CYLD [EC:3.4.19.12] | (RefSeq) ubiquitin carboxyl-termi

GO

GO:0005840   GO:0016787   GO:0036459   GO:0016579   GO:0004843   GO:0005829   GO:0070536   GO:0016021   GO:0008340   GO:1990108   GO:0031098   GO:0055090   GO:0045088   GO:0006979   GO:0061578   GO:0042742   GO:0061815  

Length:

331

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0213

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00929

outside

1  -  331

 

 

Pi

219.74334

Theta

192.272607

Tajima's D

1.755915

CLR

0.304724

CSRT

0.841857907104645

Interpretation

Uncertain