SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02141
Pre Gene Modal
BGIBMGA003007
Annotation
PREDICTED:_KDEL_motif-containing_protein_1-like_[Papilio_xuthus]
Location in the cell
Cytoplasmic   Reliability : 1.397 Mitochondrial   Reliability : 1.006 PlasmaMembrane   Reliability : 1.31
 

Sequence

CDS
ATGTACAGTTTGTTTATTTTCTTTTTGAAATGGCATTTCATCCAGTGTTCCCAAAACAACGGAGCCGGTATTTATTTGTCAGGACCAGGTCTAAAACCCGATAAGATTGTTTTGCCGGCTAGATATTTCTTCATCACGTTCAGTTCTGTGGATGAAGAGACGTACACTTCAGATTGGGCAAGAAATGTCGCAGTTGAAATTAAAGGAAAAACTCAGAAAACCAACTACTGTAGAATCTGGGTAAATAAATTAGACAGAAAAGATGGGACCTTTATTGTCCGTTACAAAATATATGAAACATGTTTTAATTTGTCTATTAACATTTATTACAAAAGTAAGAATATTGAAGGGTCACCAGTCACATTCAAAGGTCCTATTCTACCAGACCAATGCAACTGTCCAACAAAAGATTTGACGTCATGGTTGACAGACTATGGCTGCAATAATGTACCTGAGCAAATTGTGAATGACCTTAAGGCATTTCAAGCTGTAAATATGACTGTAGAGGTAAAAAGAATTGTAGAGAAGTATCATCAACCGGAAAGCACAAGTTTTTGTCATTACATTATTAAAGGCAATGAAATATTCAGAAATTGCTATGGTCGACATGTGGGTTTTAATATGTTTGCTGACAATATTCTACTATCTCTAACTAGAAAAGTTAAATTGCCTGATGTAGAAATGGTCATAAACTTAGGTGATTGGCCATTAATAAAAAAAAATACAGAACTGTTGCCAGTCTTCTCATGGTGTGGTAGCTCACAGACAATTGATATTCTTATGCCAACCTATGATATTACTGAGTCAACATTAGAGAACATGGGCAGGGTCACTCTGGATATGCTGTCTGTCCAAGGAAATGTGGAACGACCGTGGTCACAACGTGAACCCCGAGCTATTTGGCGAGGTCGAGACTCTCGCTTAGAACGACTTAAACTTGTTGATATTGCTCGATCTCATCCAGATCTGTTTAATGTATCACTTACAAACTTTTTCTTTTTTCGTGAAAAAGAAGAGCAATATGGCCCAAAACAGCCCCACATATCGTTCTTTAAATTCTTTGATTATAAATACCTAATAAATGTGGATGGAACAGTAGCTGCTTATCGTTTCCCATATCTATTAGCTGGAGGAGGACTGGTTTTAAAACAAGACTCTGAATACTATGAACACTTTTACCAGCAACTTCGAGAATGGGAACATTATGTACCAGTTAAAAATGATTTGGGAGACTTAGTAGAAAAAGTTCAGTGGGCTCTCTCGAATGATGACAAAGCACACCAAATTGCAAGAAATGCAAGACAGTTTGCAAATGACCATTTACTTCCACAAAATATAATTTGCTATCATGCTGCTTTGATATCGGAGTGGAGTAAACGAATTTCAAACAAAATTCAAGTCCAAAAAGGTATGACACATGTACCACAGTTAGAATTTGCGTGCGATTGCAGTAACACTGAAGAAGAGATTCACGATGAATTGTGA
Protein
MYSLFIFFLKWHFIQCSQNNGAGIYLSGPGLKPDKIVLPARYFFITFSSVDEETYTSDWARNVAVEIKGKTQKTNYCRIWVNKLDRKDGTFIVRYKIYETCFNLSINIYYKSKNIEGSPVTFKGPILPDQCNCPTKDLTSWLTDYGCNNVPEQIVNDLKAFQAVNMTVEVKRIVEKYHQPESTSFCHYIIKGNEIFRNCYGRHVGFNMFADNILLSLTRKVKLPDVEMVINLGDWPLIKKNTELLPVFSWCGSSQTIDILMPTYDITESTLENMGRVTLDMLSVQGNVERPWSQREPRAIWRGRDSRLERLKLVDIARSHPDLFNVSLTNFFFFREKEEQYGPKQPHISFFKFFDYKYLINVDGTVAAYRFPYLLAGGGLVLKQDSEYYEHFYQQLREWEHYVPVKNDLGDLVEKVQWALSNDDKAHQIARNARQFANDHLLPQNIICYHAALISEWSKRISNKIQVQKGMTHVPQLEFACDCSNTEEEIHDEL

Summary

EMBL
BABH01010423    KQ460709    KPJ12707.1    KQ459598    KPI94701.1    ODYU01012783    + More
SOQ59263.1    NWSH01008529    PCG62519.1    AGBW02009514    OWR50618.1    JTDY01002042    KOB72257.1    GEDC01013091    GEDC01006958    JAS24207.1    JAS30340.1    KK852595    KDR20636.1    GECZ01015354    JAS54415.1    GBHO01026181    GDHC01020254    GDHC01016915    GDHC01000356    JAG17423.1    JAP98374.1    JAQ01714.1    JAQ18273.1    KQ971342    EFA03823.2    GBBI01003171    JAC15541.1    NNAY01001780    OXU22937.1    IACF01002655    LAB68300.1    PYGN01001259    PSN36213.1    NEVH01002699    PNF41553.1    KQ414632    KOC67192.1    KYB27539.1    GDIQ01034966    JAN59771.1    GDIP01031848    JAM71867.1    LRGB01000512    KZS18469.1    APGK01040689    KB740984    ENN76211.1    GEZM01097383    GEZM01097382    JAV54237.1    BT127939    AEE62901.1    QOIP01000005    RLU22619.1    GL732533    EFX85077.1    GEGO01001605    JAR93799.1    GDIP01222692    JAJ00710.1    GDIP01135248    JAL68466.1    KZ288405    PBC26157.1    GDIP01056558    JAM47157.1    KQ977513    KYN02185.1    ACPB03001560    ACPB03001561    KQ976453    KYM85322.1    GEDV01003704    JAP84853.1    ADTU01008607    ADTU01008608    GL888206    EGI65195.1    KB631675    ERL85308.1    KQ979480    KYN21261.1    KQ981701    KYN37476.1    ERL85309.1    KQ982708    KYQ51805.1    GFWV01018662    MAA43390.1    GDIP01112905    JAL90809.1    KK107570    EZA48857.1    GAMC01008041    JAB98514.1    GGMS01011885    MBY81088.1    GL442815    EFN62991.1    GEDC01029237    GEDC01007674    JAS08061.1    JAS29624.1    AXCM01001558    GBYB01012313    JAG82080.1    GGFJ01004260    MBW53401.1    GGFJ01004387    MBW53528.1    GGFJ01004259    MBW53400.1    GGFJ01004386    MBW53527.1    GBXI01008104    JAD06188.1    GFXV01007672    MBW19477.1    AXCN02000801    ADMH02000877    ETN64785.1    CH933808    EDW09755.2    ATLV01014737    KE524984    KFB39490.1    GAKP01015201    JAC43751.1    KQ434874    KZC09703.1    GGMR01005137    MBY17756.1    CH940648    KRF79853.1    AAAB01008964    EAA12302.4    APCN01002480    GDHF01005573    JAI46741.1    JXJN01025481    AAZO01001585    DS235093    EEB11857.1    KK116389    KFM67645.1    CCAG010005900    JXUM01134344    KQ568107    KXJ69136.1    JH430824    RCHS01001612    RMX52564.1    CH475485    EDY70866.2   
Pfam
PF00630   Filamin        + More
PF05686   Glyco_transf_90
PF01926   MMR_HSR1
Interpro
IPR014756   Ig_E-set        + More
IPR013783   Ig-like_fold       
IPR006598   CAP10       
IPR017868   Filamin/ABP280_repeat-like       
IPR001298   Filamin/ABP280_rpt       
IPR023179   GTP-bd_ortho_bundle_sf       
IPR027417   P-loop_NTPase       
IPR030378   G_CP_dom       
IPR006073   GTP_binding_domain       
SUPFAM
SSF81296   SSF81296        + More
SSF52540   SSF52540       
Gene 3D
PDB
5UB5     E-value=9.78505e-36,     Score=377

Ontologies

Topology

SignalP
Position:   1 - 16,         Likelihood:  0.517231
 
 
Length:
494
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.11617
Exp number, first 60 AAs:
0.00165
Total prob of N-in:
0.00037
outside
1  -  494
 
 

Population Genetic Test Statistics

Pi
159.298835
Theta
170.096629
Tajima's D
0.044602
CLR
0.467109
CSRT
0.380280985950702
Interpretation
Uncertain
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