Gene

KWMTBOMO02140  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003155

Annotation

PREDICTED:_39S_ribosomal_protein_L3?_mitochondrial_[Amyelois_transitella]

Location

Bomo_Chr4(-):12705649-12708796      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.281

CDS

ATGTTCCCAAATAGTTTAAAATTATTATGGGGTGCTTTACAAAAATCGAGGTTTGATAATGCGGCGTGTAATATTCGTGGTGCATCGCGGCAGCCTAGATTTCGTCCACCGTATTGGTATGTCCCAAAAGAGAGAGTGTGGACAGATGACTACCTAACTAAAGAAAATAAACAATTCTTGGAGGAAGTGATAAAGGATAAACTTGAGGCACAGACTGCATTAGAAAAAAAAGCATTGACCTCTCCCATTTTAAACGATGTCAAAAAAAATGTAACATGGACTCCTCAAACAAAAAGAGTGGGACTTATTGCACGAAAGATAGGAAACTATCCATTATGGTGTAAAGATGGTAAAAAGGTATCCACGACTCTGTTACAGGTTGTTGACAATCATGTTATCAAATATATACCTCCGGAAGAATACAAACCTATGATAAAATCTAATGTAAAATGGGTAGAGAAACAAAAGTATGGCTGTATATTAGTTGGTGCTGAAAACATCGACCCTAGTGTTGTCACCAAAGATTACTGTGGAATATTTGACAGTGTTGGAATGCTGCCAAAAAGGCACCTCTGCAGATTTGTTGTATCACCAGAATCTGCTTTACCAAATGGCACTCCATTATATGCGACTCATTTTAGAGTTGGGGATTGTATTGACATTCGATCGAAAACTATGGATAGAGGTTTTCAAGGAGTGATGAAGAGGTGGGGTTTTAAGGGTATGCCTGCTTCTCATGGAGTCACCAAAACTCATAGAAGACCTGGTAATATTGGTTCTGGTGGTGAAAAAGCACGAGTTTGGCCTGGAACAAAAATGCCTGGACACATGGGTAACAGATGGAGAACACTGCGTGGTGTTAAGATTCTCCGTATTGATACAAAATATAATGTTATTTGGACATTGGGTGTTGCAATACCTGGTGAAACTGGAGCTATGTGTTATCTATTTGATACTGTGCTTCCATTAAAAAGAAACAAAACTGCACCACCTTTTCCTACTCAGCCTTTTATGAACGATGTACCAAAAGAGTATTTTGAAGACACCATTCATCCTTTTGATGAACCTACAATTTCATATTATGAAGAAATATAA

Protein

MFPNSLKLLWGALQKSRFDNAACNIRGASRQPRFRPPYWYVPKERVWTDDYLTKENKQFLEEVIKDKLEAQTALEKKALTSPILNDVKKNVTWTPQTKRVGLIARKIGNYPLWCKDGKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYLFDTVLPLKRNKTAPPFPTQPFMNDVPKEYFEDTIHPFDEPTISYYEEI

Uniprot

H9J0W8   A0A2H1X1Z2   A0A194PN09   A0A0N1PFT6   A0A2A4ITQ0   A0A0L7LA38   + More
A0A151IEK1   A0A151XDQ1   A0A158P3J8   A0A026WT80   E9IEA9   Q16K51   A0A212FA79   A0A0C9QNB6   E2C606   A0A2A3EGD1   A0A182G871   A0A195F088   A0A195BX29   A0A1B0CHG4   E1ZX69   A0A088ANR4   A0A310S523   A0A1L8DRV6   A0A1L8DRQ1   A0A0M4EVM1   A0A1L8DRL5   A0A0K8UL93   A0A2H8TKW9   B4MA56   A0A034WNV2   A0A0J7N9R1   W8BNS7   A0A1Q3F8V0   J9JU83   A0A182XYB9   B4JX38   A0A067QN15   A0A2S2PLC3   B0XDD9   C4WV99   K7J8X4   A0A2S2QRV5   A0A0A1WKB4   B4MJ76   A0A0L0CLF7   A0A1I8M701   A0A182WZ86   A0A1A9Z6Y2   A0A182VG79   A0A182LDG4   A0A182HMQ6   A0A182TJ87   Q7Q4V5   A0A0K8TLY9   D3TM63   A0A1I8Q2A9   A0A182R246   A0A232ENJ6   A0A154P060   A0A1A9US57   A0A0N0U490   F4WAS9   W5JCD7   A0A182QQ77   A0A182PVS0   A0A182FIC1   A0A182N125   N6UC09   B4L6Y4   A0A023ET42   A0A1B6F490   A0A1A9YFA7   A0A1B0BB87   A0A182VVG7   J3JWX1   A0A182JIX9   A0A182LVL6   A0A2P8ZMN8   A0A336MDX4   A0A0T6B7W4   A0A1W4VFL6   A0A224XS73   A0A084WFE6   T1PC10   A0A182SAA7   A0A0V0GDG3   B3NXK7   B4IKC5   Q9VXQ0   B4PX61   U5EYI0   A0A1B6MD64   B4R5H3   B4HCH4   Q8MRV7   A0A3B0KIZ7   A0A069DSU6   A0A1B6I3X1   R4FKF2  

Pubmed

19121390    26354079    26227816    21347285    24508170    30249741    + More
21282665    17510324    22118469    20798317    26483478    17994087    25348373    24495485    25244985    24845553    20075255    25830018    26108605    25315136    20966253    12364791    14747013    17210077    26369729    20353571    28648823    21719571    20920257    23761445    23537049    24945155    22516182    29403074    24438588    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17550304    26334808   

EMBL

BABH01010424    ODYU01012783    SOQ59262.1    KQ459598    KPI94702.1    KQ460709    + More
KPJ12706.1    NWSH01008529    PCG62520.1    JTDY01002042    KOB72254.1    KQ977866    KYM99243.1    KQ982268    KYQ58479.1    ADTU01008163    KK107109    QOIP01000008    EZA59270.1    RLU19931.1    GL762576    EFZ21068.1    CH477976    EAT34681.1    AGBW02009514    OWR50619.1    GBYB01005064    JAG74831.1    GL452895    EFN76611.1    KZ288254    PBC30770.1    JXUM01047496    KQ561521    KXJ78300.1    KQ981880    KYN33893.1    KQ976394    KYM93132.1    AJWK01012342    GL435030    EFN74159.1    KQ772169    OAD52484.1    GFDF01005004    JAV09080.1    GFDF01005003    JAV09081.1    CP012528    ALC49347.1    GFDF01005005    JAV09079.1    GDHF01025051    JAI27263.1    GFXV01002978    MBW14783.1    CH940655    EDW66115.1    GAKP01002628    JAC56324.1    LBMM01007808    KMQ89410.1    GAMC01006083    GAMC01006081    GAMC01006080    JAC00473.1    GFDL01011069    JAV23976.1    ABLF02032933    CH916376    EDV95314.1    KK853149    KDR10699.1    GGMR01017568    MBY30187.1    DS232753    EDS45417.1    AK341423    BAH71819.1    GGMS01011255    MBY80458.1    GBXI01015166    JAC99125.1    CH963738    EDW72165.1    JRES01000325    KNC32279.1    APCN01004857    AAAB01008963    EAA12062.4    GDAI01002462    JAI15141.1    CCAG010012181    EZ422515    ADD18791.1    NNAY01003150    OXU19901.1    KQ434782    KZC04520.1    KQ435833    KOX71678.1    GL888053    EGI68685.1    ADMH02001831    ETN60988.1    AXCN02002174    APGK01040621    KB740984    ENN76192.1    CH933812    EDW06130.1    GAPW01002059    JAC11539.1    GECZ01024700    JAS45069.1    JXJN01011342    BT127739    KB630727    KB632357    AEE62701.1    ERL83821.1    ERL93441.1    AXCM01002210    PYGN01000015    PSN57774.1    UFQT01000842    SSX27551.1    LJIG01009258    KRT83440.1    GFTR01005597    JAW10829.1    ATLV01023338    KE525342    KFB48940.1    KA645655    AFP60284.1    GECL01000695    JAP05429.1    CH954180    EDV46966.1    CH480852    EDW51517.1    AE014298    AAF48508.2    CM000162    EDX01824.1    GANO01001989    JAB57882.1    GEBQ01006122    JAT33855.1    CM000366    EDX18018.1    CH479330    EDW26926.1    AY119240    AAM51100.1    OUUW01000011    SPP86429.1    GBGD01001874    JAC87015.1    GECU01026102    JAS81604.1    ACPB03008949    GAHY01001878    JAA75632.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000218220    UP000037510    UP000078542    + More
UP000075809    UP000005205    UP000053097    UP000279307    UP000008820    UP000007151    UP000008237    UP000242457    UP000069940    UP000249989    UP000078541    UP000078540    UP000092461    UP000000311    UP000005203    UP000092553    UP000008792    UP000036403    UP000007819    UP000076408    UP000001070    UP000027135    UP000002320    UP000002358    UP000007798    UP000037069    UP000095301    UP000076407    UP000092445    UP000075903    UP000075882    UP000075840    UP000075902    UP000007062    UP000092444    UP000095300    UP000075900    UP000215335    UP000076502    UP000078200    UP000053105    UP000007755    UP000000673    UP000075886    UP000075885    UP000069272    UP000075884    UP000019118    UP000009192    UP000092443    UP000092460    UP000075920    UP000030742    UP000075880    UP000075883    UP000245037    UP000192221    UP000030765    UP000075901    UP000008711    UP000001292    UP000000803    UP000002282    UP000000304    UP000008744    UP000268350    UP000015103   

PRIDE

H9J0W8    Q9VXQ0    Q8MRV7   

Pfam

PF00297   Ribosomal_L3

Interpro

IPR019927   Ribosomal_L3_bac/org-type        + More
IPR000597   Ribosomal_L3       
IPR009000   Transl_B-barrel_sf       

SUPFAM

SSF50447   SSF50447       

ProteinModelPortal

H9J0W8   A0A2H1X1Z2   A0A194PN09   A0A0N1PFT6   A0A2A4ITQ0   A0A0L7LA38   + More
A0A151IEK1   A0A151XDQ1   A0A158P3J8   A0A026WT80   E9IEA9   Q16K51   A0A212FA79   A0A0C9QNB6   E2C606   A0A2A3EGD1   A0A182G871   A0A195F088   A0A195BX29   A0A1B0CHG4   E1ZX69   A0A088ANR4   A0A310S523   A0A1L8DRV6   A0A1L8DRQ1   A0A0M4EVM1   A0A1L8DRL5   A0A0K8UL93   A0A2H8TKW9   B4MA56   A0A034WNV2   A0A0J7N9R1   W8BNS7   A0A1Q3F8V0   J9JU83   A0A182XYB9   B4JX38   A0A067QN15   A0A2S2PLC3   B0XDD9   C4WV99   K7J8X4   A0A2S2QRV5   A0A0A1WKB4   B4MJ76   A0A0L0CLF7   A0A1I8M701   A0A182WZ86   A0A1A9Z6Y2   A0A182VG79   A0A182LDG4   A0A182HMQ6   A0A182TJ87   Q7Q4V5   A0A0K8TLY9   D3TM63   A0A1I8Q2A9   A0A182R246   A0A232ENJ6   A0A154P060   A0A1A9US57   A0A0N0U490   F4WAS9   W5JCD7   A0A182QQ77   A0A182PVS0   A0A182FIC1   A0A182N125   N6UC09   B4L6Y4   A0A023ET42   A0A1B6F490   A0A1A9YFA7   A0A1B0BB87   A0A182VVG7   J3JWX1   A0A182JIX9   A0A182LVL6   A0A2P8ZMN8   A0A336MDX4   A0A0T6B7W4   A0A1W4VFL6   A0A224XS73   A0A084WFE6   T1PC10   A0A182SAA7   A0A0V0GDG3   B3NXK7   B4IKC5   Q9VXQ0   B4PX61   U5EYI0   A0A1B6MD64   B4R5H3   B4HCH4   Q8MRV7   A0A3B0KIZ7   A0A069DSU6   A0A1B6I3X1   R4FKF2  

PDB

6GB2     E-value=3.81371e-57,     Score=560

KEGG

101735889    K02906 large subunit ribosomal protein L3 | (RefSeq) 39S ribosomal protein L3, mitochondrial

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0005840   GO:0006412   GO:0003735   GO:0005739   GO:0005762   GO:0032543   GO:0005763   GO:0005622   GO:0003824   GO:0006520   GO:0008483   GO:0006418   GO:0016507   GO:0048384  

PANTHER

PTHR11229  

Length:

364

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.42157

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00634

outside

1  -  364

 

 

Pi

163.829691

Theta

183.802321

Tajima's D

-0.202867

CLR

0.08174

CSRT

0.315134243287836

Interpretation

Uncertain