Gene

KWMTBOMO02137

Pre Gene Modal

BGIBMGA003157

Annotation

PREDICTED:_phosphorylated_CTD-interacting_factor_1_[Bombyx_mori]

Location

Bomo_Chr4(-):12675152-12684866      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.985

CDS

ATGAACGATGTTCGCGAAAAAGTCGTTCCTGGATCTTCTACATGGGAGAGTGGGGCCTCTCCAACTGATAGCTGTGCAGAGAACCAAACAGCATTGGGACCTGGTGGTGAGACACCCCAGACTCCTGGAGCTCCGGCACCACTTGCGCCCCATCTAGCTGCTGACCTACATCCAGATCTTATTCAACAAGGTTGGCGTAAATACTGGTCGAAAAGAGAAAACAGGCCATATTTTTGGAACAAATTATCGGGTGAATCTATGTGGGAGCTTCCGGCTGTAAAGAGAGATTTTGATCCAATAACAGATCCTTTAGGTATTTGTCACACAGGACCTTCTAATCCTGGAAATATGACACCAGGACCAAATAAACGGAGACCGTCAGAAGATAGTGGTCCTCCTCCAAAGAAATTTGTACTAGCTGGACCTTGGGATATAGAAGTACCTACAAATGTAGTTATATATGAAAGACCACCAACCATATGTCCTCATCCTAATCCAGATATAGAAGGGTTTAGATTCACTCTTGCTAATAAATTAAGACAATGCTATCAAGAATTATGTCACACAAGAGAGGGTATAGATGCCCCTAAAGATTCATTTAACAGATGGTTAATGGAAAGAAAAGTAAATGACCAGGGAGGGTCAGATCCACTGTTACCAAGTCATTGCTTTCCAGAGATTTCTTATACTATGTATGAGGAAATCATGAATGACATTCCTATTAAGTTGACTAATCCTAAATTCACTGGAGATGCCAGAAAACAATTGTCAAAATATGCTGAAGCTGCTAAAAAAATGATAGAATCAAGAAATGCATCACCAGAAAGTCGCAAAGTTGTCAAATGGAATGCAGAAGACACATTTCAGTGGCTACGACGAACTGTTGGAGCAACTTACGATGATTTTCAAGACAGACTAGCACATCTTAGGAGACAATGTCAGCCACATTTAGCAGAGACTGTAAAAGCATCTGTGGAAGGAATATGTTTGAAGATTTATCATCTATCAGCTGAATATGCAAGAAAAATACGAGAAAAACACAGTGCACTACTAAAAGAAAATGGCATACAGGAGTTACCAGCACCATTGCAACAGGCAGCACTTCGCAAGGTGTGGTGCTATCCAGTACAGTTTGCTCTGCCTGCACCTCGCGCACCTCTGTTAGAACATTTTGTTGATCGTGACACAACTGTTCTGCGTTATCTCGGGGAGACTCAAATTCTAAACTCAGCATACCTTCAAAAATTGGAATGTCTTTACCGGTACAGCTGTTTCGACGACAAGAAATTCGAACAGTTTTTGAGTCGCGTGTGGTGCCTGCTGAGACGGTACGCGGCGTGGGTGGGGGCCGGCTCTGAGGCGCACATCACGCAGATGGCGCTGCCTGTCTCCGTCCTCGAGTGCCTGCACAGGACGTTTGGTGTCACATTCGAATGTTTCGCGAGTCCGCTCGACTGCTACTTCAGACAGTATTGCTCTGCTTTCGCCGACACTGACTCATATTTCGGATCTCGCGGGCCTTTTTTGGAACTCCGTCCGGTGTCCGGGTCTATGGTGGCGCACCCGCCGTACTGCGAGGAGCTGTTGGAGGCGGCGCTGCGGCACATGGAACGCTTGCTGCAGGACTCGGCCGAGCCGCTGAGCTTCGTCGTGGTGCTGCCGGAGTGGCCCGATCGACCTACACACGCTCTGCACAAATTACAAGCTAGCCATTTTAAGAGGAAACAGGTGGTGATACCGGCATTCGAACACGAATATCGCCATGGATTCCAGCATGTACTTCCAAAGAACGAGGTGTACTTCAGATGGGGCGGCGGCACGGTGGTAGTGTGGCTGCAGAACGCGGCGGGGTTCGCCCGGTGGGGGCCCACGGACGAGCGCGTGGAGTCGTTGTTGGACGCGTGGCGGCCGCGACACAAGCTGCGGGACGCGCCGCTGCCCGCCCCCGACCCCGCGCCCGCCCCGCACTCGCCCGCGCCCCCGCCGCGGACCTAA

Protein

MNDVREKVVPGSSTWESGASPTDSCAENQTALGPGGETPQTPGAPAPLAPHLAADLHPDLIQQGWRKYWSKRENRPYFWNKLSGESMWELPAVKRDFDPITDPLGICHTGPSNPGNMTPGPNKRRPSEDSGPPPKKFVLAGPWDIEVPTNVVIYERPPTICPHPNPDIEGFRFTLANKLRQCYQELCHTREGIDAPKDSFNRWLMERKVNDQGGSDPLLPSHCFPEISYTMYEEIMNDIPIKLTNPKFTGDARKQLSKYAEAAKKMIESRNASPESRKVVKWNAEDTFQWLRRTVGATYDDFQDRLAHLRRQCQPHLAETVKASVEGICLKIYHLSAEYARKIREKHSALLKENGIQELPAPLQQAALRKVWCYPVQFALPAPRAPLLEHFVDRDTTVLRYLGETQILNSAYLQKLECLYRYSCFDDKKFEQFLSRVWCLLRRYAAWVGAGSEAHITQMALPVSVLECLHRTFGVTFECFASPLDCYFRQYCSAFADTDSYFGSRGPFLELRPVSGSMVAHPPYCEELLEAALRHMERLLQDSAEPLSFVVVLPEWPDRPTHALHKLQASHFKRKQVVIPAFEHEYRHGFQHVLPKNEVYFRWGGGTVVVWLQNAAGFARWGPTDERVESLLDAWRPRHKLRDAPLPAPDPAPAPHSPAPPPRT

Uniprot

H9J0X0   A0A2H1WWZ0   A0A2W1BQ87   A0A0N1IGT3   A0A194PMP8   A0A212FA76   + More
A0A2A4IV55   A0A1B6KPK1   A0A1B6L5W2   A0A1B6K6U1   A0A1B6H5B0   A0A1B6H9Q0   A0A1B6HBK2   A0A2J7RL49   A0A1B6GBE7   A0A1B6H522   A0A0L7RED3   A0A087ZT31   E2BFE6   A0A3L8DNS0   A0A067QTL3   A0A026W0P8   A0A151XFU5   E2A9L9   A0A151JF23   A0A195BCW0   A0A158NIJ3   F4W583   E9I8E3   A0A151JZU1   A0A195CJJ8   K7J8X0   A0A1B6CP48   A0A0N0BBC3   A0A0C9RKW0   A0A0T6AY26   A0A2A3E6N1   D7ELL0   A0A1Y1N8B4   A0A0L7KNI6   A0A023F3G3   A0A224X8F0   E0VY50   T1I0I2   A0A0P5JML8   A0A0N8AY90   A0A0P6G9N0   A0A0P5HWM9   A0A0P6FW71   A0A0P5JT66   A0A0P5E5G2   A0A0P5S9T2   A0A0P5PUX7   A0A0P5GMD7   A0A0P6B4K9   A0A0P6CP95   A0A0P6IRE6   B4N733   E9GID8   B4QJ68   W8BVF6   B4IAF4   A0A0K8ULW8   A0A0M3QWV6   A0A1W4VNP2   Q960B9   Q9VPB7   B3NIR5   B4PEQ7   A0A3B0JA03   Q29DA1   B4H7S2   B4LG28   B3M9T0   B4KYG7   A0A0A9YGZ3   A0A0P4XZH7   A0A1I8N1N8   A0A1A9YIM3   A0A0P9C3V8   A0A0P5UB61   A0A1B0AQQ4   A0A336MAW5   A0A182H369   A0A182GRV5   A0A1B0GCN5   Q16HT6   A0A1A9V576   B4IYF5   A0A1S4G0A2   A0A1B0AD59   A0A1Y1NAB2   U5EVH2   A0A182U0B9   A0A182PCA2   A0A182VMU0   A0A182M4A0   T1J547   J9JLK7   A0A182IIZ6  

Pubmed

19121390    28756777    26354079    22118469    20798317    30249741    + More
24845553    24508170    21347285    21719571    21282665    20075255    18362917    19820115    28004739    26227816    25474469    20566863    17994087    21292972    22936249    24495485    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    15632085    25401762    25315136    26483478    17510324   

EMBL

BABH01010427    BABH01010428    ODYU01011624    SOQ57486.1    KZ149933    PZC77239.1    + More
KQ460709    KPJ12702.1    KQ459598    KPI94706.1    AGBW02009514    OWR50623.1    NWSH01006991    PCG63164.1    GEBQ01026823    JAT13154.1    GEBQ01020869    JAT19108.1    GECU01000534    JAT07173.1    GECU01037850    JAS69856.1    GECU01036300    JAS71406.1    GECU01035660    JAS72046.1    NEVH01002699    PNF41550.1    GECZ01010033    JAS59736.1    GECZ01000029    JAS69740.1    KQ414612    KOC69184.1    GL448009    EFN85606.1    QOIP01000006    RLU22041.1    KK853287    KDR08936.1    KK107503    EZA49640.1    KQ982179    KYQ59272.1    GL437918    EFN69821.1    KQ979022    KYN24355.1    KQ976513    KYM82406.1    ADTU01016849    GL887634    EGI70635.1    GL761538    EFZ23159.1    KQ981354    KYN42460.1    KQ977642    KYN00905.1    GEDC01030988    GEDC01022068    JAS06310.1    JAS15230.1    KQ436240    KOX67381.1    GBYB01007551    JAG77318.1    LJIG01022550    KRT79985.1    KZ288349    PBC27375.1    DS497874    EFA12235.1    GEZM01013508    JAV92516.1    JTDY01007907    KOB64863.1    GBBI01002844    JAC15868.1    GFTR01007779    JAW08647.1    DS235843    EEB18306.1    ACPB03006600    GDIQ01196549    JAK55176.1    GDIQ01231139    JAK20586.1    GDIQ01036608    JAN58129.1    GDIQ01221933    JAK29792.1    GDIQ01053306    JAN41431.1    GDIQ01199286    JAK52439.1    GDIP01146275    JAJ77127.1    GDIQ01094777    JAL56949.1    GDIQ01122973    JAL28753.1    GDIQ01239681    JAK12044.1    GDIP01022212    JAM81503.1    GDIQ01090128    JAN04609.1    GDIQ01018376    JAN76361.1    CH964168    EDW80172.1    GL732546    EFX80788.1    CM000363    CM002912    EDX11285.1    KMZ00858.1    GAMC01013451    JAB93104.1    CH480826    EDW44267.1    GDHF01024610    JAI27704.1    CP012525    ALC44779.1    AY052132    AAK93556.1    AE014296    BT132932    AAF51638.1    AEW12904.1    CH954178    EDV52561.1    CM000159    EDW95131.1    OUUW01000002    SPP76812.1    CH379070    EAL30513.1    CH479219    EDW34712.1    CH940647    EDW70427.1    CH902618    EDV40121.1    CH933809    EDW18778.1    GBHO01014814    JAG28790.1    GDIP01238477    JAI84924.1    KPU78379.1    GDIP01115524    JAL88190.1    JXJN01002007    UFQT01000833    SSX27482.1    JXUM01106763    KQ565082    KXJ71363.1    JXUM01083312    KQ563369    KXJ73967.1    CCAG010002173    CH478142    EAT33818.1    CH916366    EDV97628.1    GEZM01013507    JAV92517.1    GANO01001863    JAB58008.1    AXCM01001233    JH431850    ABLF02033036   

Proteomes

UP000005204    UP000053240    UP000053268    UP000007151    UP000218220    UP000235965    + More
UP000053825    UP000005203    UP000008237    UP000279307    UP000027135    UP000053097    UP000075809    UP000000311    UP000078492    UP000078540    UP000005205    UP000007755    UP000078541    UP000078542    UP000002358    UP000053105    UP000242457    UP000007266    UP000037510    UP000009046    UP000015103    UP000007798    UP000000305    UP000000304    UP000001292    UP000092553    UP000192221    UP000000803    UP000008711    UP000002282    UP000268350    UP000001819    UP000008744    UP000008792    UP000007801    UP000009192    UP000095301    UP000092443    UP000092460    UP000069940    UP000249989    UP000092444    UP000008820    UP000078200    UP000001070    UP000092445    UP000075902    UP000075885    UP000075903    UP000075883    UP000007819    UP000075880   

PRIDE

H9J0X0    Q960B9    Q9VPB7   

Pfam

PF12237   PCIF1_WW        + More
PF00397   WW

Interpro

IPR022035   PCIF1_WW        + More
IPR039881   PCIF1-like       
IPR001202   WW_dom       
IPR036020   WW_dom_sf       
IPR029048   HSP70_C_sf       

SUPFAM

SSF51045   SSF51045        + More
SSF100934   SSF100934       

Gene 3D

1.20.1270.10    

CDD

cd00201  WW

ProteinModelPortal

H9J0X0   A0A2H1WWZ0   A0A2W1BQ87   A0A0N1IGT3   A0A194PMP8   A0A212FA76   + More
A0A2A4IV55   A0A1B6KPK1   A0A1B6L5W2   A0A1B6K6U1   A0A1B6H5B0   A0A1B6H9Q0   A0A1B6HBK2   A0A2J7RL49   A0A1B6GBE7   A0A1B6H522   A0A0L7RED3   A0A087ZT31   E2BFE6   A0A3L8DNS0   A0A067QTL3   A0A026W0P8   A0A151XFU5   E2A9L9   A0A151JF23   A0A195BCW0   A0A158NIJ3   F4W583   E9I8E3   A0A151JZU1   A0A195CJJ8   K7J8X0   A0A1B6CP48   A0A0N0BBC3   A0A0C9RKW0   A0A0T6AY26   A0A2A3E6N1   D7ELL0   A0A1Y1N8B4   A0A0L7KNI6   A0A023F3G3   A0A224X8F0   E0VY50   T1I0I2   A0A0P5JML8   A0A0N8AY90   A0A0P6G9N0   A0A0P5HWM9   A0A0P6FW71   A0A0P5JT66   A0A0P5E5G2   A0A0P5S9T2   A0A0P5PUX7   A0A0P5GMD7   A0A0P6B4K9   A0A0P6CP95   A0A0P6IRE6   B4N733   E9GID8   B4QJ68   W8BVF6   B4IAF4   A0A0K8ULW8   A0A0M3QWV6   A0A1W4VNP2   Q960B9   Q9VPB7   B3NIR5   B4PEQ7   A0A3B0JA03   Q29DA1   B4H7S2   B4LG28   B3M9T0   B4KYG7   A0A0A9YGZ3   A0A0P4XZH7   A0A1I8N1N8   A0A1A9YIM3   A0A0P9C3V8   A0A0P5UB61   A0A1B0AQQ4   A0A336MAW5   A0A182H369   A0A182GRV5   A0A1B0GCN5   Q16HT6   A0A1A9V576   B4IYF5   A0A1S4G0A2   A0A1B0AD59   A0A1Y1NAB2   U5EVH2   A0A182U0B9   A0A182PCA2   A0A182VMU0   A0A182M4A0   T1J547   J9JLK7   A0A182IIZ6  

PDB

6IS0     E-value=3.46411e-160,     Score=1452

KEGG

101741450    K17584 phosphorylated CTD-interacting factor 1 | (RefSeq) phosphorylated CTD-interacting factor 1

GO

GO:0005634   GO:0048190   GO:0005515   GO:0008270   GO:0005674   GO:0006366   GO:0003824   GO:0006520   GO:0008483   GO:0006418   GO:0016507   GO:0048384  

PANTHER

PTHR21727  

Length:

664

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0598

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00065

outside

1  -  664

 

 

Pi

19.344894

Theta

175.436301

Tajima's D

0.497927

CLR

0.729355

CSRT

0.510124493775311

Interpretation

Uncertain