SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02135  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA003158
Annotation
PREDICTED:_ATP_synthase_mitochondrial_F1_complex_assembly_factor_2_isoform_X1_[Amyelois_transitella]
Location in the cell
Extracellular   Reliability : 1.54
 

Sequence

CDS
ATGAGAATATTTACTCTGGCTTCTGGTATTTCAACTTTACTGAAAACACGATGTACCCTATGCAGTATATATCGTCCATATGCTACACGTAAAAGATTTTATAAGGGGACAGCTGTGATTCAGAATGACAACAAATGGGAAGTGACTTTGGATCATCGACGTCTAAAAACACCAAATGGGAATGTATTAACCGTTGGGAATGAACCTCTTGCTCGTGTTGTTGCTGTAGAATGGGATTCACAAAATGAAACAATTTCACAAGCCACCATGCATTTGACCGCATTGTGTAATACTGCTCTGGACAATCCCGGGAAATTGACATCACATGACATTGTCAATTACCTTTTGGAACATTATCCTACAGACACACTTTTATTTTATTCTGAGGATGAAGAAGAATTGAGGGATCTTCAAGAAAGAAAATGGACACCAATATTGGACTGGTTTCAAAAGACATTTAATGTCAAACAGGAACTAGCGAATAGTATACAGCCACCGCCGGTCTTCACAGAAACTAGAGCTGTGTTAGCTCGGCATTTTCTATCATATGATTTCGCAGCACTGACAGCAATAAATTTCGGTGTCGAGGCATTAAAGTCACCGATCTTAATGTTGGCGTGTATGGAGCGCCGCGTTGTACCCGAGGAAGCTGTATTGTTAGCAAGACTTGAAGAAGAATATCAGCTGGAGCGCTGGGGCCGCGTGCCGTGGGCGCACGGGCTGAGCCAGGCCGACCTGACGGCGCGCGTGTCCGCCGCCCTGCTCCTCGTACACTGCGCTACTGAGAAACATGCCATCAAAACTAAATCTGCCCAAGATTCACAATGA
Protein
MRIFTLASGISTLLKTRCTLCSIYRPYATRKRFYKGTAVIQNDNKWEVTLDHRRLKTPNGNVLTVGNEPLARVVAVEWDSQNETISQATMHLTALCNTALDNPGKLTSHDIVNYLLEHYPTDTLLFYSEDEEELRDLQERKWTPILDWFQKTFNVKQELANSIQPPPVFTETRAVLARHFLSYDFAALTAINFGVEALKSPILMLACMERRVVPEEAVLLARLEEEYQLERWGRVPWAHGLSQADLTARVSAALLLVHCATEKHAIKTKSAQDSQ

Summary

EMBL
BABH01010433    BABH01010434    NWSH01005404    PCG64244.1    KZ149933    PZC77241.1    + More
KQ459598    KPI94708.1    GAIX01000279    JAA92281.1    AGBW02009514    OWR50625.1    KQ971342    EFA03810.1    GEZM01032991    JAV84469.1    KQ460709    KPJ12700.1    KK852561    KDR21316.1    APGK01040876    KB740984    KB631899    ENN76329.1    ERL86977.1    GECZ01019850    JAS49919.1    GECZ01027286    JAS42483.1    CH933807    EDW11765.1    GECZ01022171    JAS47598.1    GECZ01014880    JAS54889.1    GEDC01011921    JAS25377.1    CH916368    EDW02852.1    KK855521    PTY22944.1    GFDF01001868    JAV12216.1    CP012523    ALC39727.1    CH902620    EDV31885.2    GFDF01001891    JAV12193.1    NEVH01016288    PNF26343.1    UFQS01000114    UFQT01000114    SSW99840.1    SSX20220.1    GL441542    EFN64669.1    CH964214    EDW80385.1    KQ976690    KYM78051.1    ADTU01012511    KQ982626    KYQ53460.1    KQ414620    KOC67644.1    GL888828    EGI57675.1    KQ980800    KYN12887.1    GAKP01016287    GAKP01016286    JAC42665.1    CH379061    EAL33149.1    GDHF01028072    JAI24242.1    QOIP01000009    RLU18489.1    KZ288285    PBC29467.1    DS231884    EDS43058.1    KQ981560    KYN39920.1    CH940649    EDW63641.2    GAMC01003673    JAC02883.1    KK107199    EZA55562.1    CH479189    EDW25547.1    CH954179    EDV54446.1    GBXI01009742    JAD04550.1    AE014134    AAF53985.1    AGB93203.1    BT127885    AEE62847.1    GFDL01010016    JAV25029.1    CM000361    CM002910    EDX05726.1    KMY91322.1    GEBQ01011893    JAT28084.1    AY094758    AAM11111.1    JRES01000933    KNC27139.1    KQ434787    KZC05300.1    KQ760551    OAD59830.1    KRF81220.1    OUUW01000010    SPP86005.1    GL732523    EFX90134.1    CH480833    EDW46452.1    KQ978392    KYM94269.1    GGFM01005224    MBW25975.1    GBHO01037148    GBHO01037147    GDHC01002488    JAG06456.1    JAG06457.1    JAQ16141.1    ADMH02002160    ETN58186.1    GGFM01005221    MBW25972.1    CM000158    EDW89943.1    GGFK01012243    MBW45564.1    CCAG010019974    CH477641    EAT37913.1    GL767845    EFZ12969.1    DS235107    EEB12033.1    JXUM01114158    KQ565759    KXJ70694.1    ATLV01018379    KE525231    KFB43070.1    JXJN01012447    AJVK01061659    GGFJ01008318    MBW57459.1    AAAB01008984    EAA14894.5    APCN01003368    GDIQ01137137    JAL14589.1    NNAY01000176    OXU30297.1    GDIP01097113    GDIP01097111    JAM06602.1    GDIQ01059622    JAN35115.1    GDIP01174850    GDIP01112209    GDIP01090411    GDIP01045823    GDIP01045821    JAJ48552.1    GDIP01022080    JAM81635.1    GDIQ01117748    JAL33978.1    JH431789   
Pfam
PF07542   ATP12
Interpro
IPR011419   ATP12_ATP_synth-F1-assembly        + More
IPR042272   ATP12_ATP_synth-F1-assembly_N       
IPR023335   ATP12_ortho_dom_sf       
IPR026261   RBCK1/SHARPIN       
IPR001841   Znf_RING       
IPR017907   Znf_RING_CS       
IPR013083   Znf_RING/FYVE/PHD       
IPR038538   MTERF_sf       
IPR003690   MTERF       
PDB
2R31     E-value=2.20811e-13,     Score=181

Ontologies

Topology

Length:
275
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.2064
Exp number, first 60 AAs:
0.0283
Total prob of N-in:
0.01992
outside
1  -  275
 
 

Population Genetic Test Statistics

Pi
246.548773
Theta
173.33498
Tajima's D
1.736473
CLR
0.541566
CSRT
0.833458327083646
Interpretation
Uncertain
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