SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02134
Pre Gene Modal
BGIBMGA003159
Annotation
putative_ubiquitin_conjugating_enzyme_7_interacting_protein_3_isoform_2_[Operophtera_brumata]
Location
Bomo_Chr4(-):12643654-12649296      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.222
 

Sequence

CDS
ATGAGTGGAGACGTAGATGCGCATCGTCCTCGTCCCTTGTCCGGGGGATTGTGGTCACTGCTTTCCTGGCTCCGACGTGACGATCCTTCTTTGTCAATTGAAAGTTTGTCAAGTATAGGATCTGATAGAACCACCGCTAGTTTTGCTTTTTTAACTCCCGAGCACTATCGTATAGGAAAGAAGCCAACAGTCCTACCACCACCTGGACCTCCCACCGATTCGTATAAAAGGAGAGTTCATGATCGCAATTTGAGATTCAAACATGATTACAATCTAACGCTACATCGTAAATACGGACTTCACAAGAGTCAAGAGAGTTTAGGATACGACACGTTTAGCCTTCCACCTTATAAGAAATCAGACAATCTAAGCAACGCCGGAAGAGACCGCAGGGCTGCTAGCGAGGGCTTTCATCGCCGTGCCGTGCACGTACCAGGGAAGAGACGCGCGCCTCCACCTCCAATACGAGCTTCATCCCTGGGTCCTTCAACATCACTCACTAGAAAGTCCAGAAAACGACCAGCACCTTTACCACCGCCTATCGCATTTACAACGATAGACAAAATAAAGACTGATAAAAAAGTCAACTCTGAACTATCGATGAATACTAATTCAGAAAATGATGTGAAATTATTGAAAGCGAATATCAATTTAATGGAATTGAAATCTCAAAAACATAGCAAAACAGAAAGCAATGTAAAAGAAACTCGCCCACGGTCGGAGAAGAATTTTTTAAAACACATATTCGAAAGCAAAAAGAGGCATTCCGTTGAAACAGCTTCCATTAGACTATTACCTAGTATCAGCGAGTTGGACAAGCAAGCCGCTGAAATAATTAAGAATGACAAACTAAAAGGGTCTCAAAACTGTTCAGATGAAACATCGTTACAAACTTCCGGCGATGACATGTGGATGTGTACCATTTGTTTTAGAAAATACAAGGCGTCAACTCCCATATGTATTAATTGCCCAGTTCCAAAAAATACCATTAATACACATTCTACTGCACTAGAAGGATCCAAAAAGGTTATTCCTAATGCTTCCAATATATACACACAAACAGATTATGATATTAAACCATCATGTAGTAAAAATAATAAAAGCGATGAAAGGCAAAAGCTAAAAGAAATGTTGAAAGAAATGAAAGATTCTCTTCCAAAGAAAATGAAATATAACCATGATAATCAATTGCCAAACAACGTTTCTGTAGAAAAATTAAATGGAACAGACTTAAGTACCACCACTCCAACTTTGCGCATAGGTACTTCAAACGAAAAACTTGCAACTTCAACTAAACCTGAAACAATACAAGAAACAAAAAAAGAAATACAATCGCTAGTAATACCCACAATTCGAACAATACATCAGTCAGAGTTACCTTGTACAAGTCAGAAACTGTTGGGTGATGATCTGAAACAAACAAACTATGTTAAAAACACAGAAAATCTTGCGACACCAATATTTAAAGAAATAATACCAAAAAATGTTGTCACTCACCAATTTGATTTGAACACTCCGCTAAAAATTTCTTCGCTGTTAAATCCTGTAAATCCTGTAAATGTAACAAAATCCGAGAATATTGCGGTAACATCAAAAGAGTTACAAAATGATAAAGTTACAAAAAGTACACAGAGCGAAAGACTCCTGAAAACACCAAATAATGCAGCTAAAGAGGACGTAAAATCAGCTTTGGAACAACGCTCTGAATCTGTAAAAGTAGAGGGCACTCGAAATCATTTAAAAATTTCAAAAGAAACGTTGATAGAGCCCAAAATTTTTCGTAATGATATGAAAAATATTGAAAAAGGATTGCACGATTCAAATAAAAAAAATATTCAGAAAACTATCAATGAAAATGATAAAGAAACTCCAGTTCCTTCAACCAGTGCGGTCGCTTCAACATCCAGTAACTTTAGTAATAATATTAAACACGTTGAAAATATAAATCACCATTTGAAGCGGCGTGAACTTATTAATCAACTCGAAAAATCAATAGCGAACGGAGACGAACAAGCAGCGGCGGATGCTGCAGCCAAATTAGCTCAGTTACGACTATCGTGCTCTGTTTTATCTTTTTCTTCTCAAATATTTAGTGAGTCCAGAAACTTAAATCCAAACTGCACCGGAGTAGTAACAATTCCTGTTGTTAATGATGCCAATGGGCAAGATAAAAAGGATAATCTGCCCTCTCCATTCGAACTTAAATCTACAGTCGCCAACAACAAACAATTAATTAAAGAAAAACAATCCGAACCCGTTGTTGAGACAACTGCACAAAACACGCAAAATGTTGGAAAAGGAATTGAAAAGCCATTATGTACAGCAGCAAATCCCAACGAAAGCAAAGTTATAATAAAGGTGTGGGTTGAAGACCGAGAAGCAACCCGTGGACCAATTAACTTAAACATCGGAAAGAGAAATGTTTTGGCTGATTTGCGTCGAGAAGCTGAGAGGTCCCTCGGTATCCCTACTAATTTGCAACGTTGGATCATTGGACGGACCCTATGCAGCGATAATAATACTCCTCTTTACACTTTAGCTGGCCCAGAGCTTAAGGCTCCTTTTTATTTATGTTTAGTAAAGTCAGAAACGAAAACATCTACAGAATTAAAAAACGATAAGACTGAAACTTCCACAACCAAGAAAGAAGTTCACGAATCAGTCAATGTATACAATGAGTTAGTGCAACTCGAACAACAGGCGTTGATAGCGAACACAGAAACATTCGAATGTGGTGTTTGTTTGGAAGAATGTGCTCCAGGGAATGGTGTAATATTGCGAGAGTGTGTACACTCGTTTTGTCGAGAATGCTTAACAGACATCGTACGCCATAGTGAAGAACCGGACGTTTCATGTCCGGCGGTGGCTTGTCGCAGTTTACTACAAGAGCGTGAAATCCGCACGTTAGTATCCTCGGAAGATTATGAAAAGTGGTTGGCTCGCGGTTTAGCCGCGGCAGAGAATGGCACGCGGAACTCATTCCACTGTCGTACAAGAGACTGCACGGGATGGGCTCTCTGCGAGCCGGGCGTGCGGCATTTTCCGTGTCCTGTCTGCAAAAAAATCAACTGCGTACCCTGTCAGAGTATTCATGAAGGCGAGACATGCGAACAACATCGAGTCAAGCTGGAGTCTATATCGAATGCCAATCCTGACCACACAGACGACAGTACAAGAGCTTTACTTTTAAATTTAATAAAGAAAGGCGAAGCTTTGGAATGTCCGGAATGCAAGGCTATTATTACGAAGAAATGGGGATGCGATTGGGTCAAGTGTTCAGCATGCAAAACAGAAATATGTTGGGTAACTCGCGGCCGACGGTGGGGCCAGGCGGGGCGTGGCGACACAAGCGGCGGCTGCCGTTGTGGCGTTGATGGGAAAAGATGCCATCCATCATGTGGATATTGTCATTAA
Protein
MSGDVDAHRPRPLSGGLWSLLSWLRRDDPSLSIESLSSIGSDRTTASFAFLTPEHYRIGKKPTVLPPPGPPTDSYKRRVHDRNLRFKHDYNLTLHRKYGLHKSQESLGYDTFSLPPYKKSDNLSNAGRDRRAASEGFHRRAVHVPGKRRAPPPPIRASSLGPSTSLTRKSRKRPAPLPPPIAFTTIDKIKTDKKVNSELSMNTNSENDVKLLKANINLMELKSQKHSKTESNVKETRPRSEKNFLKHIFESKKRHSVETASIRLLPSISELDKQAAEIIKNDKLKGSQNCSDETSLQTSGDDMWMCTICFRKYKASTPICINCPVPKNTINTHSTALEGSKKVIPNASNIYTQTDYDIKPSCSKNNKSDERQKLKEMLKEMKDSLPKKMKYNHDNQLPNNVSVEKLNGTDLSTTTPTLRIGTSNEKLATSTKPETIQETKKEIQSLVIPTIRTIHQSELPCTSQKLLGDDLKQTNYVKNTENLATPIFKEIIPKNVVTHQFDLNTPLKISSLLNPVNPVNVTKSENIAVTSKELQNDKVTKSTQSERLLKTPNNAAKEDVKSALEQRSESVKVEGTRNHLKISKETLIEPKIFRNDMKNIEKGLHDSNKKNIQKTINENDKETPVPSTSAVASTSSNFSNNIKHVENINHHLKRRELINQLEKSIANGDEQAAADAAAKLAQLRLSCSVLSFSSQIFSESRNLNPNCTGVVTIPVVNDANGQDKKDNLPSPFELKSTVANNKQLIKEKQSEPVVETTAQNTQNVGKGIEKPLCTAANPNESKVIIKVWVEDREATRGPINLNIGKRNVLADLRREAERSLGIPTNLQRWIIGRTLCSDNNTPLYTLAGPELKAPFYLCLVKSETKTSTELKNDKTETSTTKKEVHESVNVYNELVQLEQQALIANTETFECGVCLEECAPGNGVILRECVHSFCRECLTDIVRHSEEPDVSCPAVACRSLLQEREIRTLVSSEDYEKWLARGLAAAENGTRNSFHCRTRDCTGWALCEPGVRHFPCPVCKKINCVPCQSIHEGETCEQHRVKLESISNANPDHTDDSTRALLLNLIKKGEALECPECKAIITKKWGCDWVKCSACKTEICWVTRGRRWGQAGRGDTSGGCRCGVDGKRCHPSCGYCH

Summary

Uniprot
H9J0X2   A0A2W1BQ98   A0A2H1VS10   A0A2A4IYK3   A0A0L7LHK8   A0A1E1W317   + More
Pubmed
19121390    28756777    26227816   
EMBL
BABH01010434    KZ149933    PZC77242.1    ODYU01003800    SOQ43014.1    NWSH01005404    + More
PCG64242.1    JTDY01001039    KOB75053.1    GDQN01009725    JAT81329.1   
Proteomes
UP000005204    UP000218220    UP000037510   
PRIDE
H9J0X2   
Pfam
PF13639   zf-RING_2        + More
PF07542   ATP12
PF01485   IBR
Interpro
IPR013083   Znf_RING/FYVE/PHD        + More
IPR001841   Znf_RING       
IPR017907   Znf_RING_CS       
IPR026261   RBCK1/SHARPIN       
IPR042272   ATP12_ATP_synth-F1-assembly_N       
IPR011419   ATP12_ATP_synth-F1-assembly       
IPR023335   ATP12_ortho_dom_sf       
IPR002867   IBR_dom       
Gene 3D
3.30.40.10     1.10.3580.10     3.30.2180.30    
ProteinModelPortal
H9J0X2   A0A2W1BQ98   A0A2H1VS10   A0A2A4IYK3   A0A0L7LHK8   A0A1E1W317   + More
PDB
5TTE     E-value=0.000495316,     Score=107

Ontologies

KEGG
101741592    K10630 RanBP-type and C3HC4-type zinc finger-containing protein 1 [EC:2.3.2.31] | (RefSeq) uncharact
GO
GO:0043461   GO:0016740   GO:0005515   GO:0008270   GO:0005674   GO:0006366   GO:0003824   GO:0006520   GO:0008483   GO:0006418   GO:0016507   GO:0048384  
PANTHER
PTHR22770:SF35  

Topology

Length:
1137
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00049
Exp number, first 60 AAs:
0.00049
Total prob of N-in:
0.00003
outside
1  -  1137
 
 

Population Genetic Test Statistics

Pi
217.469656
Theta
191.4988
Tajima's D
0.59389
CLR
37.477299
CSRT
0.542272886355682
Interpretation
Uncertain
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