Gene

KWMTBOMO02129

Annotation

PREDICTED:_hydrocephalus-inducing_protein_homolog_[Bombyx_mori]

Location

Bomo_Chr4(-):12579100-12579602      View in EpiBrowser

Full name

Hydrocephalus-inducing protein       + More
Hydrocephalus-inducing protein homolog      

Alternative Name

Protein Hy-3

Location in the cell

Mitochondrial   Reliability : 1.844

CDS

ATGGGACCGAGACCTCTACTGAATTTTCCTGATAAATTGTCGATTCCACCTGTACCGGTGAAAACAGAAAGTCATGCGCTAATGTCAGTGAAAAACATCGGAAATATGTCCACTGGCTTTACTCTGAGCACGAAAAGCCCGTTTTCAATTCGACCGGAGTCATTCTATTTGAAGCCCAATGAAAAAGTAGACGTGGAAGTAAAATTCAAGTCATTAAATTTGGGTCAAACTTCTGGCACGCTTTTTGCAAGCTTTGAGACCGGTATGTGTGTATAA

Protein

MGPRPLLNFPDKLSIPPVPVKTESHALMSVKNIGNMSTGFTLSTKSPFSIRPESFYLKPNEKVDVEVKFKSLNLGQTSGTLFASFETGMCV

Description

Required for ciliary motility.

Keywords

Alternative splicing   Cell projection   Coiled coil   Complete proteome   Reference proteome   3D-structure   Ciliopathy   Kartagener syndrome   Polymorphism   Primary ciliary dyskinesia  

Feature

chain  Hydrocephalus-inducing protein
splice variant  In isoform 3.
sequence variant  In dbSNP:rs7200485.

Uniprot

A0A2H1WYD1   A0A2A4JIA0   A0A212FA77   A0A3P8WZA5   A0A3Q0CV73   H0YF91   + More
A0A2J8VW12   A0A1Y2BU15   A0A3L7I100   A0A2I3GS89   A0A2I3HBT3   Q80W93-3   A0A0F8CGF7   G1S2C7   A0A2Y9E6A0   A0A2J8KA52   D3ZBX6   F7G5P3   A0A2J8KA69   Q80W93-2   Q4G0P3-6   A0A2R8P889   A0A2R9BU59   A0A0G2JXD6   A0A2J8KA36   F8WD03   A0A2J8KA30   Q80W93   A0A146S741   A0A1Y3NA92   A0A3L8S543   A0A2J8KA79   Q4G0P3-10   Q4G0P3-8   A0A2K6SGU5   Q4G0P3-5   A0A2R9BNT1   A0A2K5PX03   F7HRC4   H2QBG9   A0A2J8KA34   A0A2I2YC33   A0A3P9CFH9   A0A1Y1V650   A0A2K5PX87   A0A2K6SGR5   A0A3P8R5Q1   Q4G0P3   A0A2J8VW46   U3C8G1   A0A2J8VW30   A0A2J8VW10   F7E8Q9   A0A2K5C120   A0A2K6QSV3   G3RBF4   A0A2K6KCF4   A0A2K5J094   G5C1Q4   A0A2K5MXP2   A0A3P9MV17   A0A1U7UJG0   A0A3P9MVB1   A0A3P9MUW1   A0A2J8VW25   A0A2K5WQ30   G1L6C6   F6RXQ7   A0A2K5C1C4   F6VSP8   H2NRF5   A0A2J8VW78   D2HFV7   S9YCV5   A0A091F1A8   A0A3B4VDD2   G7Q1K8   G7NQP9   A0A2Y9K2D2   G3PQA2   A0A096NSJ0   A0A2K5WPX1   A0A2K6BH83   A0A2K5MY48   F6VSU6   A0A0D9QW96   G3PQA6   A0A226P3U7   A0A226MPP2   U3JZ09   A0A091CXW8   A0A3M0IL70   A0A384D1F4   H0ZG39   A0A1S3J5T2   A0A3M0K6W3   A0A3M0KCQ3   F1PIH9   A0A3B4VD89   A0A3B3XFN7  

Pubmed

22118469    24487278    15616553    29704459    12719380    16141072    + More
15489334    17296793    18250199    21183079    25835551    15057822    14702039    17974005    16938426    23022101    25186273    22722832    22673903    30282656    16136131    22398555    25186727    25243066    25362486    21993625    20010809    17431167    23149746    22002653    24621616    20360741    26383154    16341006   

EMBL

ODYU01011571    SOQ57394.1    NWSH01001291    PCG71825.1    AGBW02009514    OWR50630.1    + More
AC009136    AC027281    AC099495    AC138625    NDHI03003408    PNJ61730.1    MCOG01000137    ORY38260.1    RAZU01000121    RLQ71610.1    ADFV01127327    ADFV01127328    ADFV01127329    ADFV01127330    ADFV01127331    ADFV01127332    ADFV01127333    ADFV01127334    ADFV01127335    ADFV01127336    AY173049    AK030144    AK043971    AK142981    BB641870    BB664150    BC080316    KQ040962    KKF32196.1    NBAG03000381    PNI31890.1    AABR07043814    AABR07043815    AABR07043816    AABR07043817    PNI31886.1    AK022933    AK026688    AK299016    AK299348    BC028351    BC043273    AL122038    AL133042    AL137259    AJFE02103669    AJFE02103670    AJFE02103671    AJFE02103672    AJFE02103673    AJFE02103674    AJFE02103675    AJFE02103676    AJFE02103677    AJFE02103678    PNI31883.1    PNI31884.1    GCES01109917    JAQ76405.1    KZ150898    OUM63332.1    QUSF01000059    RLV97374.1    PNI31889.1    AACZ04050289    AACZ04050290    AACZ04050291    AACZ04050292    AACZ04050293    AACZ04050294    AACZ04050295    PNI31888.1    CABD030101940    CABD030101941    CABD030101942    CABD030101943    CABD030101944    CABD030101945    CABD030101946    CABD030101947    CABD030101948    CABD030101949    MCFH01000028    ORX48158.1    PNJ61724.1    GAMS01001378    JAB21758.1    PNJ61729.1    PNJ61722.1    JH172853    EHB15465.1    PNJ61727.1    AQIA01043520    AQIA01043521    AQIA01043522    AQIA01043523    AQIA01043524    AQIA01043525    AQIA01043526    AQIA01043527    AQIA01043528    AQIA01043529    ACTA01017627    ACTA01025627    ACTA01033627    ACTA01041626    ACTA01049626    ACTA01057626    ACTA01065626    JSUE03026555    JSUE03026556    JSUE03026557    JSUE03026558    JSUE03026559    JSUE03026560    JSUE03026561    JSUE03026562    JSUE03026563    JSUE03026564    ABGA01059428    ABGA01059429    ABGA01059430    ABGA01059431    ABGA01059432    ABGA01059433    ABGA01059434    ABGA01059435    ABGA01059436    ABGA01059437    PNJ61726.1    GL192795    EFB27046.1    KB016958    EPY81980.1    KK719362    KFO63041.1    CM001295    EHH60546.1    CM001272    EHH31829.1    AHZZ02019016    AHZZ02019017    AHZZ02019018    AQIB01129532    AQIB01129533    AQIB01129534    AQIB01129535    AQIB01129536    AQIB01129537    AQIB01129538    AQIB01129539    AQIB01129540    AQIB01129541    AWGT02000192    OXB74069.1    MCFN01000563    OXB57222.1    AGTO01021407    KN123534    KFO24649.1    QRBI01000288    RMB89435.1    ABQF01043727    ABQF01043728    ABQF01043729    ABQF01043730    ABQF01043731    QRBI01000116    RMC08855.1    RMC09014.1    AAEX03004081    AAEX03004082   

Proteomes

UP000218220    UP000007151    UP000265120    UP000189706    UP000005640    UP000193920    + More
UP000273346    UP000001073    UP000000589    UP000248480    UP000002494    UP000008225    UP000240080    UP000195826    UP000276834    UP000233220    UP000233040    UP000002277    UP000001519    UP000265160    UP000193719    UP000265100    UP000233020    UP000233200    UP000233180    UP000233080    UP000006813    UP000233060    UP000242638    UP000189704    UP000233100    UP000008912    UP000006718    UP000001595    UP000052976    UP000261420    UP000009130    UP000248482    UP000007635    UP000028761    UP000233120    UP000029965    UP000198419    UP000198323    UP000016665    UP000028990    UP000269221    UP000261680    UP000007754    UP000085678    UP000002254    UP000261480   

PRIDE

H0YF91    Q80W93    D3ZBX6    Q4G0P3    F8WD03   

Pfam

PF00635   Motile_Sperm        + More
PF15780   ASH
PF17213   Hydin_ADK
PF01728   FtsJ
PF01576   Myosin_tail_1
PF00078   RVT_1

Interpro

IPR013783   Ig-like_fold        + More
IPR033305   Hydin-like       
IPR000535   MSP_dom       
IPR031549   ASH       
IPR008962   PapD-like_sf       
IPR033768   Hydin_ADK       
IPR027417   P-loop_NTPase       
IPR029063   SAM-dependent_MTases       
IPR025807   Adrift-typ_MeTrfase       
IPR002877   rRNA_MeTrfase_FtsJ_dom       
IPR002928   Myosin_tail       
IPR000477   RT_dom       

SUPFAM

SSF49354   SSF49354        + More
SSF52540   SSF52540       
SSF53335   SSF53335       

Gene 3D

2.60.40.10    

ProteinModelPortal

A0A2H1WYD1   A0A2A4JIA0   A0A212FA77   A0A3P8WZA5   A0A3Q0CV73   H0YF91   + More
A0A2J8VW12   A0A1Y2BU15   A0A3L7I100   A0A2I3GS89   A0A2I3HBT3   Q80W93-3   A0A0F8CGF7   G1S2C7   A0A2Y9E6A0   A0A2J8KA52   D3ZBX6   F7G5P3   A0A2J8KA69   Q80W93-2   Q4G0P3-6   A0A2R8P889   A0A2R9BU59   A0A0G2JXD6   A0A2J8KA36   F8WD03   A0A2J8KA30   Q80W93   A0A146S741   A0A1Y3NA92   A0A3L8S543   A0A2J8KA79   Q4G0P3-10   Q4G0P3-8   A0A2K6SGU5   Q4G0P3-5   A0A2R9BNT1   A0A2K5PX03   F7HRC4   H2QBG9   A0A2J8KA34   A0A2I2YC33   A0A3P9CFH9   A0A1Y1V650   A0A2K5PX87   A0A2K6SGR5   A0A3P8R5Q1   Q4G0P3   A0A2J8VW46   U3C8G1   A0A2J8VW30   A0A2J8VW10   F7E8Q9   A0A2K5C120   A0A2K6QSV3   G3RBF4   A0A2K6KCF4   A0A2K5J094   G5C1Q4   A0A2K5MXP2   A0A3P9MV17   A0A1U7UJG0   A0A3P9MVB1   A0A3P9MUW1   A0A2J8VW25   A0A2K5WQ30   G1L6C6   F6RXQ7   A0A2K5C1C4   F6VSP8   H2NRF5   A0A2J8VW78   D2HFV7   S9YCV5   A0A091F1A8   A0A3B4VDD2   G7Q1K8   G7NQP9   A0A2Y9K2D2   G3PQA2   A0A096NSJ0   A0A2K5WPX1   A0A2K6BH83   A0A2K5MY48   F6VSU6   A0A0D9QW96   G3PQA6   A0A226P3U7   A0A226MPP2   U3JZ09   A0A091CXW8   A0A3M0IL70   A0A384D1F4   H0ZG39   A0A1S3J5T2   A0A3M0K6W3   A0A3M0KCQ3   F1PIH9   A0A3B4VD89   A0A3B3XFN7  

PDB

2YS4     E-value=9.10055e-12,     Score=162

KEGG

101742171    K17570 hydrocephalus-inducing protein | (RefSeq) hydrocephalus-inducing protein homolog

GO

GO:0008168   GO:0003341   GO:0021591   GO:0060438   GO:1990718   GO:0007420   GO:0002064   GO:1904158   GO:0007275   GO:0003774   GO:0016459   GO:0016021  

PANTHER

PTHR23053  

Subcellular location

  

Length:

91

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00138

Exp number, first 60 AAs:

0.00085

Total prob of N-in:

0.02710

outside

1  -  91

 

 

Pi

85.721309

Theta

89.960647

Tajima's D

0.146981

CLR

0

CSRT

0.408379581020949

Interpretation

Possibly Positive selection