SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02125
Pre Gene Modal
BGIBMGA003164
Annotation
PREDICTED:_hydrocephalus-inducing_protein_homolog_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.116 PlasmaMembrane   Reliability : 1.367
 

Sequence

CDS
ATGTTTATTTCACATTTTAAGGTTTATGAATCACAATGGAAATTCTTGATACCGTCACGAAATCTCGTCATGAACTTACTCATAGTCGGCACTGTCAGAGAACCAGACGTTGTATTTGTACCCACGATTCTGGTCATTAAAAATTCACTGGTTGGCTTCACGAAAACCGACATTGTGATATTACAAAACAATGAAAACGAAAGTTTGAAATTCGAATTTAAAGGTGATTCATTGTGCAACGACTCTGGAAAAACTCCAGTTGTCGTTGAACCCGCGTGCGGGATCATGAAACCAATGTCCGAAACTCCTATTAAAATAATCTACACTCCGATATTGGACGGTCCGTTATCGTTCAAGCTATTCTGTAGCGTGACTCACTTGAAAAAGTTTTTGACTTTGTGCGTGAATGCGCTGAGCTATGAAATAAAACCTAAAGTAACGTATTATTTGATTGGGAACGAACACATTTTGAACAATGATGCGTTAACTAAAATATATTTGGATCAGACTGCGTCGACGTATGAAAGAACAGTACCGTTCACTATAAAAAACGATGGCTCCGCAACTTTCTTTTTCGATTGGCGTTATGATACGAGGGCCGTCAAGAAGTATCTACAAGTCACCGTAGAACCTAAGTGTGGTCACGTAACTCCGAGTGGCGAGGTTGAGTGCGTCCTGTACTTCACACTAAAACAAGTCCCGGTTCAGGCATTCCCTGTTACATTATTTATTTCTGATGGTCCAGAATATAATATATTTTTATATGCTGAAATCGAGAAGCCCTTGTACCATTTCACGTGTATGGATTACGATTTTGGAAAATGTTTCGTGAATGCACCAGACAGTACATACAAGAAAAATATAGCCTTTTGTAACAACGATAAAACCCCTTTGACCATTGATTTGAATTTCAACAATTTACCGGAGTTATACGTCGATTATCCCAAAGTGTCTTGCGTTGAAGCAAATCAAAGATTAAAGATAGCCATTTTCTTCAGACCGAAACAAGTCAGAGAATATGAGTTTAAATTACAATTCTGGGTAAATTCTCTCGTTGAAGAAGTCGTTACCATTAAAGGAGAAGGTGTGCCTTTATTATTCGATCTCTACGAAGGGTGCCAAAAGAGTTTCGATCTTGGACCGGTTAAGCTTGGGGAGAAAATAATTCGTAGAATAGAAGTAATGAACCACAGTAAAATCCCGATCGATGCCAGTTTTATATTCAGAGATATGTATCCCGTTGTGGATAACACGACGATCTCTCAGATAACTAGCGTGTGCCTTAGTCCCAGTAACACGAATATTCAGGCAGATGCGGGCCCATCTAGAGGAAAGATGCTTCAGGACCACAAAAATGACATTGTTACTAATCAAATTGCTATGGACATACAAAATGCTTTATCTTCTTTAAAAGTTATACCAAATAAATGCAAAATAATGCCGCATCGAAAAATACCTCTCAAGATTCAATTTAAGCCACTTGGAATGATTAGTTCATTAAGCGTCCAGTTGAACATGAAAGTTCTTGAATTCGAAAAGCCCCTGGTGCGACTCAGCGGAAGCGCAACGGGCATGAGTCTTTGTTTGAGCCAAAATTCATTACAATTTGGGCGAGTACGTAAACGAGGCTGTAAAGTATTGAAAGTTATGCTGTTGAATAAAGGGGACTTTGGTGCTAGATTTTGGTGGCAGCCTTTGACGTCTGACGAATTTACTATTTCCCCCCAAAAAGGAAACATCGCGGCCCATACAAACGTAACATTCACTATAACTTTTAGACCGCTCAACCACAATCCGTTCATCAAAGTTTGGGCAAGCTGTAACATTGAAAACTTCATGCCACTAGAGTTGGCACTGTACGCGACTTGTGTTGATATAGGGAATGTTCAAAACAAGTCGCTTTACTTGGAATGTCCCGTACGTGAGCTACAGACCGAATATGTGGTGGTCACTAATCCTTCTGATGATCTGTGGCTAGTTTTGTCGGAACTATCTGGTGGCCCATTTGAAACTCTAAAGCAATTCAATGTTGAGCCCAATTCGACCTTTGAAATACCGGTACATTTTAAACCAAAGGCTATTGGAAAACATGAGGTTTGA
Protein
MFISHFKVYESQWKFLIPSRNLVMNLLIVGTVREPDVVFVPTILVIKNSLVGFTKTDIVILQNNENESLKFEFKGDSLCNDSGKTPVVVEPACGIMKPMSETPIKIIYTPILDGPLSFKLFCSVTHLKKFLTLCVNALSYEIKPKVTYYLIGNEHILNNDALTKIYLDQTASTYERTVPFTIKNDGSATFFFDWRYDTRAVKKYLQVTVEPKCGHVTPSGEVECVLYFTLKQVPVQAFPVTLFISDGPEYNIFLYAEIEKPLYHFTCMDYDFGKCFVNAPDSTYKKNIAFCNNDKTPLTIDLNFNNLPELYVDYPKVSCVEANQRLKIAIFFRPKQVREYEFKLQFWVNSLVEEVVTIKGEGVPLLFDLYEGCQKSFDLGPVKLGEKIIRRIEVMNHSKIPIDASFIFRDMYPVVDNTTISQITSVCLSPSNTNIQADAGPSRGKMLQDHKNDIVTNQIAMDIQNALSSLKVIPNKCKIMPHRKIPLKIQFKPLGMISSLSVQLNMKVLEFEKPLVRLSGSATGMSLCLSQNSLQFGRVRKRGCKVLKVMLLNKGDFGARFWWQPLTSDEFTISPQKGNIAAHTNVTFTITFRPLNHNPFIKVWASCNIENFMPLELALYATCVDIGNVQNKSLYLECPVRELQTEYVVVTNPSDDLWLVLSELSGGPFETLKQFNVEPNSTFEIPVHFKPKAIGKHEV

Summary

EMBL
BABH01010444    KZ149933    PZC77251.1    NWSH01001291    PCG71826.1    AGBW02009514    + More
OWR50630.1    ODYU01009244    SOQ53522.1    KQ459598    KPI94718.1    KQ461196    KPJ06426.1    JTDY01000796    KOB75846.1    DS235371    EEB15378.1    KQ765174    OAD54090.1    AADN05000561    KK455442    KFQ76081.1    KL205731    KFV73572.1    PPHD01008635    POI31443.1    KL225379    KFW71611.1    KQ977412    KYN02890.1    KK415219    KFQ85082.1    KQ982665    KYQ52600.1    AKCR02000174    PKK18919.1    MCFN01000563    OXB57221.1    KL871350    KGL91870.1    KQ435792    KOX74282.1    KL411055    KFR03001.1    LMAW01000459    KQL50268.1    GL769168    EFZ10626.1    ADTU01010652    ADTU01010653    ADTU01010654    ADTU01010655    ADTU01010656    LSYS01005191    OPJ78097.1    OPJ78096.1    KQ435007    KZC13514.1    KK936156    KFQ47220.1    KQ976506    KYM82840.1    CM004473    OCT82470.1    OCT82469.1    GECZ01017623    JAS52146.1    AKHW03005169    KYO27512.1    KYO27513.1    GL442063    EFN63970.1    KQ981225    KYN44368.1    AAMC01003423    AAMC01003424    AAMC01003425    AAMC01003426    AAMC01003427    AAMC01003428    AAMC01003429    AAMC01003430    AAMC01003431    AAMC01003432    KQ978966    KYN26906.1    CCKQ01014030    CDW85762.1    AMGL01028451    AMGL01028452    AMGL01028453    AMGL01028454    AMGL01028455    AMGL01028456    AMGL01028457    AMGL01028458    AMGL01028459    AMGL01028460    NEDP02003910    OWF47429.1    GL888730    EGI58236.1    MCFG01000062    ORX83929.1    KB202284    ESO91099.1    KL897887    KGL84882.1    ACTA01001627    ACTA01137625    ACTA01145624    ACTA01153623    ACTA01161622    ACTA01169620    ACTA01177618    ACTA01185616    ACTA01193614    AMCR01008518    EJY79583.1    AAGW02055408    AAGW02055409    AAGW02055410    AAGW02055411    AAGW02055412    AAGW02055413    AAGW02055414    AAGW02055415    AAGW02055416    AAGW02055417    GL192795    EFB27046.1    AANG04002512    MDYQ01000025    PRP86885.1    MCGO01000039    ORY39534.1    GG666603    EEN50348.1    KB320797    ELW63034.1    GEDC01023880    JAS13418.1    ADFV01127327    ADFV01127328    ADFV01127329    ADFV01127330    ADFV01127331    ADFV01127332    ADFV01127333    ADFV01127334    ADFV01127335    ADFV01127336    DF237179    GAQ85333.1    MPUH01000554    OMJ77837.1    GCES01037457    JAR48866.1    GCES01037458    JAR48865.1    GCES01037459    JAR48864.1    GCES01037453    JAR48870.1    GCES01037456    JAR48867.1    AMQN01014785    KB311278    ELT89592.1    GCES01037451    JAR48872.1    GCES01037452    JAR48871.1    KB554237    EMP29717.1    GAMS01001378    JAB21758.1    GCES01037454    JAR48869.1    AQIA01043520    AQIA01043521    AQIA01043522    AQIA01043523    AQIA01043524    AQIA01043525    AQIA01043526    AQIA01043527    AQIA01043528    AQIA01043529    JSUE03026555    JSUE03026556    JSUE03026557    JSUE03026558    JSUE03026559    JSUE03026560    JSUE03026561    JSUE03026562    JSUE03026563    JSUE03026564    MCOG01000137    ORY38260.1   
Pfam
PF15780   ASH        + More
PF17213   Hydin_ADK
PF07177   Neuralized
PF07525   SOCS_box
PF07610   DUF1573
PF01728   FtsJ
Interpro
IPR033305   Hydin-like        + More
IPR013783   Ig-like_fold       
IPR008962   PapD-like_sf       
IPR033768   Hydin_ADK       
IPR031549   ASH       
IPR000399   TPP-bd_CS       
IPR027417   P-loop_NTPase       
IPR006573   NHR_dom       
IPR001496   SOCS_box       
IPR036036   SOCS_box-like_dom_sf       
IPR000535   MSP_dom       
IPR011467   DUF1573       
IPR023591   Ribosomal_S2_flav_dom_sf       
IPR025807   Adrift-typ_MeTrfase       
IPR029063   SAM-dependent_MTases       
IPR002877   rRNA_MeTrfase_FtsJ_dom       
SUPFAM
SSF49354   SSF49354        + More
SSF52540   SSF52540       
SSF158235   SSF158235       
SSF52313   SSF52313       
SSF53335   SSF53335       
Gene 3D

Ontologies

Topology

Length:
699
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.144890000000001
Exp number, first 60 AAs:
0.13676
Total prob of N-in:
0.00624
outside
1  -  699
 
 

Population Genetic Test Statistics

Pi
203.351492
Theta
186.388939
Tajima's D
0.679866
CLR
0.433163
CSRT
0.564871756412179
Interpretation
Uncertain
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