Gene

KWMTBOMO02124

Annotation

PREDICTED:_hydrocephalus-inducing_protein_homolog_[Bombyx_mori]

Location

Bomo_Chr4(-):12520844-12522962      View in EpiBrowser

Full name

Hydrocephalus-inducing protein       + More
Hydrocephalus-inducing protein homolog      

Alternative Name

Protein Hy-3

Location in the cell

Cytoplasmic   Reliability : 2.752

CDS

ATGTCGTACTCGCCATTAGTGGTCGGCGAGAGGGAGGATACATTGGAAATCTACAATAACTTAGTTGGCACTTACATATACAGAGTGAAGCTTAAGTGTCTCCCGGGCAAAGAGAAGAACCTTGAATTCACGACAAGTTTTGGTACTTGTATCCCTTTACGGCTTCGAATACAGAATAAAACCGATGTGAAAACAGATTTCATAGCTGAGGTATCTCATTCTTCAATTCAAATAGATAAAGAATGTTGCTTGGGACCATTAGAAAAAGGAAAGATTTTAGTGTGGTTTGAACCAACACAGTTGGGAGTGCAGAATTGTAAAGTGTCCTTCAAATCGACGCTCGCTGGTGAATTTGTATTTAATATTAAAGGAATAGCGACGGAACCCAAGCCGCAGGGCCCGTACGAAGTTAAGGCTGGTGGATCTACAACTATTAAATTTAAAAATGTCTTCGATTCATCGAGAATGTTCAAAATATACGTAGACCGGGAGGAGTTTTACGTTAAAACTATGTTTGAAACTATAAAACCAAAGAAGGACCTGAGAATATCTGTTTATCTGAACGACAAGCCCGCACAAGGCTGGACAGAAGTACCTACTGGATGTTTAACTATAGAGACACACGAACCAGCTGAACCTAAAGTACACTGGACTTATTTTCTACAGGGAAAACAGTAG

Protein

MSYSPLVVGEREDTLEIYNNLVGTYIYRVKLKCLPGKEKNLEFTTSFGTCIPLRLRIQNKTDVKTDFIAEVSHSSIQIDKECCLGPLEKGKILVWFEPTQLGVQNCKVSFKSTLAGEFVFNIKGIATEPKPQGPYEVKAGGSTTIKFKNVFDSSRMFKIYVDREEFYVKTMFETIKPKKDLRISVYLNDKPAQGWTEVPTGCLTIETHEPAEPKVHWTYFLQGKQ

Description

Required for ciliary motility.

Keywords

Alternative splicing   Cell projection   Coiled coil   Complete proteome   Reference proteome   3D-structure   Ciliopathy   Kartagener syndrome   Polymorphism   Primary ciliary dyskinesia  

Feature

chain  Hydrocephalus-inducing protein
splice variant  In isoform 3.
sequence variant  In dbSNP:rs7200485.

Uniprot

A0A2H1WKT1   A0A2A4JJ76   A0A212FA77   A0A194PP09   A0A194QSA7   A0A0L7LKW4   + More
A0A2W1BSE4   A0A091CXW8   W5MHQ1   W5MHR6   V4BQE4   L9KKN1   F6WJJ0   A0A3P8IM41   H0WFN6   A0A2T7NHJ3   K1QL99   A0A0B7A3N7   A0A267FQF0   A0A183WAC8   A0A337SLB3   A0A1I8GWQ9   A0A1I8GKJ3   A0A315VMU0   A0A0B7A3D2   Q80W93   Q3MHU4   A0A232FAZ7   A0A0Q3WR32   G1PU02   Q5BJQ9   S4R9B3   A0A2C9K9X8   R7TDL7   A0A212DDA5   A0A3L7I1U8   A0A210QFE7   C3ZBW1   A0A093H3D0   S7P5L3   K7JQB3   L5MD55   A0A3Q0CV73   G5C1Q4   A0A091WNA9   A0A0A0AFS5   H2XZ27   U6DAW9   G3VZI4   A0A3Q0K1N7   A0A1L8GF23   G3T094   A0A1L8GF33   A0A1S3J5T2   A0A0F8CGF7   F6QBA5   A0A2K6GI20   G7Q1L1   A0A1S3EXT0   F1LSN6   A0A0G2JXD6   F6U0F6   W5P1K1   G1S2C7   G4VJV4   A0A2Y9E6A0   E1BED7   H2NRF5   A0A2J8VW78   A0A3Q0G7E4   L7MZG4   M7BNE7   A0A2U4BD20   A0A341AQ85   L5KUE2   A0A068XHE2   A0A1S3MN59   A0A1S3MN07   A0A1S3MMV0   G3URZ1   A0A2Y9SVU2   G1MRN0   A0A3P9MUW1   A0A3P9MV17   A0A146Y440   H2QBG9   K7G0R0   B1H3K7   Q4G0P3   G3RBF4   A0A2J8KA34   M3YFZ1   F1NYR0   H2YKD6   M3YFZ2   A0A1D5P4W4   I3K684   W5LN16   A0A2Y9K2D2   A0A1W4Z5Y2  

Pubmed

22118469    26354079    26227816    28756777    23254933    23385571    + More
17495919    22992520    17975172    26392545    29703783    12719380    16141072    15489334    17296793    18250199    21183079    28648823    21993624    15562597    29294181    29704459    28812685    18563158    20075255    21993625    12481130    15114417    21709235    27762356    26383154    25835551    18464734    22002653    15057822    22673903    20809919    22253936    21881562    23624526    23258410    20838655    16136131    17381049    14702039    15616553    17974005    16938426    23022101    25186273    22398555    15592404    25186727    25329095   

EMBL

ODYU01009244    SOQ53522.1    NWSH01001291    PCG71826.1    AGBW02009514    OWR50630.1    + More
KQ459598    KPI94718.1    KQ461196    KPJ06426.1    JTDY01000796    KOB75846.1    KZ149933    PZC77251.1    KN123534    KFO24649.1    AHAT01020935    AHAT01020936    KB202284    ESO91099.1    KB320797    ELW63034.1    UZAO01062662    VDQ04961.1    AAQR03081674    PZQS01000012    PVD20612.1    JH816714    EKC34643.1    HACG01027710    CEK74575.1    NIVC01000845    PAA76040.1    AANG04002512    NHOQ01001396    PWA24892.1    HACG01027711    CEK74576.1    AY173049    AK030144    AK043971    AK142981    BB641870    BB664150    BC080316    BC104674    AAI04675.1    NNAY01000565    OXU27639.1    LMAW01000459    KQL50268.1    AAPE02023070    AAPE02023071    BC091376    AAH91376.1    AMQN01014785    KB311278    ELT89592.1    MKHE01000004    OWK16227.1    RAZU01000121    RLQ71611.1    NEDP02003910    OWF47429.1    GG666603    EEN50348.1    KL205731    KFV73572.1    KE161800    EPQ05523.1    KB101785    ELK36190.1    JH172853    EHB15465.1    KL411055    KFR03001.1    KL871350    KGL91870.1    HAAF01007423    CCP79247.1    AEFK01034944    AEFK01034945    AEFK01034946    AEFK01034947    AEFK01034948    AEFK01034949    AEFK01034950    AEFK01034951    AEFK01034952    AEFK01034953    CM004473    OCT82469.1    OCT82470.1    KQ040962    KKF32196.1    CM001295    EHH60549.1    AABR07043814    AABR07043815    AABR07043816    AABR07043817    CM001272    EHH31832.1    AMGL01028451    AMGL01028452    AMGL01028453    AMGL01028454    AMGL01028455    AMGL01028456    AMGL01028457    AMGL01028458    AMGL01028459    AMGL01028460    ADFV01127327    ADFV01127328    ADFV01127329    ADFV01127330    ADFV01127331    ADFV01127332    ADFV01127333    ADFV01127334    ADFV01127335    ADFV01127336    HE601627    CCD79705.1    ABGA01059428    ABGA01059429    ABGA01059430    ABGA01059431    ABGA01059432    ABGA01059433    ABGA01059434    ABGA01059435    ABGA01059436    ABGA01059437    NDHI03003408    PNJ61726.1    AAWZ02029921    KB554237    EMP29717.1    KB030572    ELK14581.1    GCES01037454    JAR48869.1    AACZ04050289    AACZ04050290    AACZ04050291    AACZ04050292    AACZ04050293    AACZ04050294    AACZ04050295    AGCU01130378    AGCU01130379    AGCU01130380    AGCU01130381    AGCU01130382    AGCU01130383    AGCU01130384    BC161431    AAI61431.1    AK022933    AK026688    AK299016    AK299348    AC027281    AC099495    AC138625    BC028351    BC043273    AL122038    AL133042    AL137259    CABD030101940    CABD030101941    CABD030101942    CABD030101943    CABD030101944    CABD030101945    CABD030101946    CABD030101947    CABD030101948    CABD030101949    NBAG03000381    PNI31888.1    AEYP01035514    AEYP01035515    AEYP01035516    AEYP01035517    AEYP01035518    AEYP01035519    AEYP01035520    AEYP01035521    AEYP01035522    AEYP01035523    AADN05000561    AERX01064686    AERX01064687    AERX01064688   

Proteomes

UP000218220    UP000007151    UP000053268    UP000053240    UP000037510    UP000028990    + More
UP000018468    UP000030746    UP000011518    UP000002280    UP000005225    UP000245119    UP000005408    UP000215902    UP000050795    UP000011712    UP000095280    UP000000589    UP000215335    UP000051836    UP000001074    UP000245300    UP000076420    UP000014760    UP000273346    UP000242188    UP000001554    UP000053584    UP000002358    UP000189706    UP000006813    UP000053283    UP000053858    UP000008144    UP000007648    UP000186698    UP000007646    UP000085678    UP000002279    UP000233160    UP000009130    UP000081671    UP000002494    UP000002356    UP000001073    UP000008854    UP000248480    UP000001595    UP000189705    UP000001646    UP000031443    UP000245320    UP000252040    UP000010552    UP000087266    UP000001645    UP000248484    UP000242638    UP000002277    UP000007267    UP000005640    UP000001519    UP000000715    UP000000539    UP000007875    UP000005207    UP000018467    UP000248482    UP000192224   

PRIDE

Q80W93    F1LSN6    Q4G0P3   

Pfam

PF17213   Hydin_ADK        + More
PF15780   ASH
PF01728   FtsJ
PF18581   SYCP2_ARLD
PF01576   Myosin_tail_1
PF00635   Motile_Sperm

Interpro

IPR013783   Ig-like_fold        + More
IPR033305   Hydin-like       
IPR008962   PapD-like_sf       
IPR031549   ASH       
IPR033768   Hydin_ADK       
IPR027417   P-loop_NTPase       
IPR023591   Ribosomal_S2_flav_dom_sf       
IPR025807   Adrift-typ_MeTrfase       
IPR029063   SAM-dependent_MTases       
IPR002877   rRNA_MeTrfase_FtsJ_dom       
IPR001955   Pancreatic_hormone-like       
IPR000535   MSP_dom       
IPR041322   SYCP2_ARLD       
IPR002928   Myosin_tail       
IPR000399   TPP-bd_CS       

SUPFAM

SSF49354   SSF49354        + More
SSF52540   SSF52540       
SSF52313   SSF52313       
SSF53335   SSF53335       

Gene 3D

2.60.40.10    

ProteinModelPortal

A0A2H1WKT1   A0A2A4JJ76   A0A212FA77   A0A194PP09   A0A194QSA7   A0A0L7LKW4   + More
A0A2W1BSE4   A0A091CXW8   W5MHQ1   W5MHR6   V4BQE4   L9KKN1   F6WJJ0   A0A3P8IM41   H0WFN6   A0A2T7NHJ3   K1QL99   A0A0B7A3N7   A0A267FQF0   A0A183WAC8   A0A337SLB3   A0A1I8GWQ9   A0A1I8GKJ3   A0A315VMU0   A0A0B7A3D2   Q80W93   Q3MHU4   A0A232FAZ7   A0A0Q3WR32   G1PU02   Q5BJQ9   S4R9B3   A0A2C9K9X8   R7TDL7   A0A212DDA5   A0A3L7I1U8   A0A210QFE7   C3ZBW1   A0A093H3D0   S7P5L3   K7JQB3   L5MD55   A0A3Q0CV73   G5C1Q4   A0A091WNA9   A0A0A0AFS5   H2XZ27   U6DAW9   G3VZI4   A0A3Q0K1N7   A0A1L8GF23   G3T094   A0A1L8GF33   A0A1S3J5T2   A0A0F8CGF7   F6QBA5   A0A2K6GI20   G7Q1L1   A0A1S3EXT0   F1LSN6   A0A0G2JXD6   F6U0F6   W5P1K1   G1S2C7   G4VJV4   A0A2Y9E6A0   E1BED7   H2NRF5   A0A2J8VW78   A0A3Q0G7E4   L7MZG4   M7BNE7   A0A2U4BD20   A0A341AQ85   L5KUE2   A0A068XHE2   A0A1S3MN59   A0A1S3MN07   A0A1S3MMV0   G3URZ1   A0A2Y9SVU2   G1MRN0   A0A3P9MUW1   A0A3P9MV17   A0A146Y440   H2QBG9   K7G0R0   B1H3K7   Q4G0P3   G3RBF4   A0A2J8KA34   M3YFZ1   F1NYR0   H2YKD6   M3YFZ2   A0A1D5P4W4   I3K684   W5LN16   A0A2Y9K2D2   A0A1W4Z5Y2  

KEGG

101742171    K17570 hydrocephalus-inducing protein | (RefSeq) hydrocephalus-inducing protein homolog

GO

GO:0008168   GO:0003341   GO:0021591   GO:0060438   GO:1990718   GO:1904158   GO:0002064   GO:0005179   GO:0005576   GO:0007420   GO:0007275   GO:0003774   GO:0016459   GO:0000287   GO:0030976  

PANTHER

PTHR23053  

Subcellular location

  

Length:

225

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00285

Exp number, first 60 AAs:

0.00285

Total prob of N-in:

0.01722

outside

1  -  225

 

 

Pi

115.662874

Theta

128.747556

Tajima's D

-0.40091

CLR

2.065201

CSRT

0.266786660666967

Interpretation

Uncertain