SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02121
Pre Gene Modal
BGIBMGA003000
Annotation
PREDICTED:_uncharacterized_protein_LOC106118318_[Papilio_xuthus]
Location in the cell
Nuclear   Reliability : 4.356
 

Sequence

CDS
ATGTTTGGATATAGCAAAGAAGCAGTCAGAGTGAAAGTTAAGAAATGTGAGGGTAAACTCCAGCCAGAGCTGAGGAAGTTCTCAGTTGATCCTCAAATAACATCTTTAGAGGTCTTACAGAGCATTTTAGTTAAGGCATTTGATATTAAATCTGACTTCACCTTATCATACAGAAGTGTTGATGATTATGGACAAGAAATATATTTACCGTTATTATCAGACTGGGACCTGGATGCAGCATTTCTTAAGGCTCATAATATAGCTCTTGGGTTAAGAACAGAACCATGTGTTCTATTGAAAGTCGATATGAAACCTTTCTCGGAAGCCTCTGAAGATTGGGAGCCACCACCTGCTTCTCCAACACCAATAACAAATCATGGTTACAAAGAACAACCTACAGTTGCACCAGTACAGTTGCACCATCAAACAGAGAAACAAGAATCTCAAACTGGTTTTCAAGGACTAATTATGAATCAGGTTGAGAAAACATTCAATATGGTTTCAAGAGCTTTAAATCTATATGAAGATCCTAGCACTCCACCGAGACCACCTCTAAGTGACAATGAGTTTAGAGCTTTCTTAGATGCAGTTGGCCAGATTACTAATCCAACAAAACTAAGAGAAGTAATATACTGTGGAGGTATTGATCCCAGTTTGAGGAAAGTTGTCTGGAAACATATTTTGAATGTATATCCCGAAGGAATGACAGGAAAAGAAAGAATGGACTACATTAAAATGAAAGCGAATGAATATTATTCTCTGAGAACGCGATGGAAAGATTGTATTCAGAAAGGCATGGTAAATGCAGATCTAGCGTACGTTACAAGTATGGTCCGAAAGGATGTTCTCCGGACCGACAGACATCACACATTTTATGCCGGCAGTGACGACAATCAAAACATTGCTTCATTATTTAATATCTTGACAACTTATGCTTTGAATCATCCAACCGTAAGTTATTGTCAAGGCATGTCCGATCTCGCGTCCCCTCTCCTAGTTACAATGGGCGACGAAGCTCACGCGTATATCTGTCTCTGTGCGCTCATGACGCGCCTGTACCCCAACTTCCTTCTAGACGGGGAAGCTATGACCCTAAAATTTTCGCATCTCACCGAATCCCTGCAGGTTTACGATCCGGATTTCTATAATTATTTAAAATTACAACAAGCTGACGATCTGCTGTTCTGTTACCGATGGCTGTTACTGGAAATGAAACGTGAATTTGCTTTCGATGACGCACTAAGAATGCTCGAGGTGCTGTGGGCGTCTTTACCCCAGAAAATTCCAGGGCTCGAATTATCGTTGAAAGAAAAGGAATTCGATCCAGTAGACGATCTGGCCGATGAGCCGCCGCCATCGAGCCCACTACTGAAAACACCTCGTGAAAACGCATACACCAAAGTGTGTGCCATCCGAAGGCAAAGTTCCAGTTTCAGTTTAGCAAATGTAAAAGCCCCAAAGCTCGCTACAAGTAATCAAATGAATCACAGTTTAGACGAGAACGTAACCCGTAAAGTTTCCGTTAATTCGTCGCTAAAACATTCCAAAGAGTTCCAAAGTTTAGATGATGCAACGCTACACATGCAAAACGCCAAATTCGACCGTCACGATGAGTACGCGACTAAAGAGAACGGATTGTCCCCGAAAGATAGTAAAGGTCAAACGAGACGAAGTATGAAAAGTGTTCCGGAAAATACAAAGGCTGAAATTCAAGACACACTGTCCACTGCGTGGTCGAGTACAGGAAATCTAATGAATGGATCTCCTCACGCAGACCCCTCCAAAGAGACACCGCTGGGAAATCAAATAAGAATATTGAGAAATAAAATATCGGTGCATAACAGTAAATTCTTTTCGTCGTTAGAAAAACTGAATGACACCGAGAATTCGGAATTTCCAGAAAAACCCAAAATTAAAATGATCAAAAACCTAAATGAATTCCTTAACTTTGCAACGGGAAGTAAAATCAATACGCAGCACGCCCAATTACAACGAACTAAATCGGCCGTCGACAACGCTTCCTATCTGGATTGTCCAAGAATAACGTTAACAAAAACCGATAATAAAAAGAGATCTTTTAAAGAAGATTCGCTGAAGATGAATATAAACAAGAACACTTGTCCGGAAACCAACGAGGGCAGCAGTCCCGACGATTCTCAGGAATATTATCCAATGAACACTTCCATGACGAGGGAGCTAAGACTAGAACTAGAACATTTAGATCGACAAGTTTTCGGACCATCGTACATTAATCGGCGCAGTATGTTATGCGATTCGCCTTCCGATTCGTTTAGCGTCGACGATAAATTAAGTATCAATCAATTTAAAGAAGTGAAACCGGAATGTAGAACTAGCGATGTTTTAGATCCGCACATAGAAGTTACAGAAGTAAAAGAAATGGTAAAGAAGTCGCCGCTACTCGAAACAGGAAAGTCAAACGCGAGAAGCGCTGAAGATATATATTTATGGGAAAACCCGTTACACAGGAACACACCAACGACGAGGACATCGGCCAGCTGTCCTCAAACTCCTGACGAACAAGCCGATCTCGACTTCGACGGTGATACAGGAGAAATAATCGAAGAACATTTCGGAAAAAAGTCTGTTACACCAATCAAATTATTAAGAAAAATTCAATCGGCTGATGCTCACGACTCCTTTAAGATAACTAAACAAAGTGATGTTAACTCGAGTAATTCTGACGTGTCCGACAAACACGTGACTCAGTTAGAAGAAATACAATCAATGAACAATCAACAAGAGATATCGAACAATTCGAGATCACAGAATTTCTTCTCTAGTATGTCACAAGAATTGGAGAATGCAAGAAAAAATTGCGAATCGTTGTTGAGCGTGAGGCAGCCCAATTTGCATAGCGTCGCATCAACTATCAACAATTTCCAGAAGAAGTACGAAGTTTTGAAGCCGCCCCCGCAAAGAAATACTAACGTATCTCCGATCGTTGGCGATGCTTCAACAAAAACTAGTATAAGTAGTCTTCCACCTCCCGCTGTGTTCGGAGGAGGAAATCCATTTTTGATGTTCCTATGCCTAACGGTCCTGCTACAACACAGGGACTACATAATGAGAAACCGTATGGACTATAACGAGTTAGCGATGCATTTTGACAAAATGGTTCGTAAACATAATGTAAACAGGGTGTTGAACCAGGCTCGGCAAATGTATGCGATCTATTTAAAACATCAAGCACATAAAATCGCCGACGTTGCTACCTGGCCTATAATGTATCCAGATGATCAGATTATGTATTACAAGCCTATCTGCAAGAAGAATGTACTATGA
Protein
MFGYSKEAVRVKVKKCEGKLQPELRKFSVDPQITSLEVLQSILVKAFDIKSDFTLSYRSVDDYGQEIYLPLLSDWDLDAAFLKAHNIALGLRTEPCVLLKVDMKPFSEASEDWEPPPASPTPITNHGYKEQPTVAPVQLHHQTEKQESQTGFQGLIMNQVEKTFNMVSRALNLYEDPSTPPRPPLSDNEFRAFLDAVGQITNPTKLREVIYCGGIDPSLRKVVWKHILNVYPEGMTGKERMDYIKMKANEYYSLRTRWKDCIQKGMVNADLAYVTSMVRKDVLRTDRHHTFYAGSDDNQNIASLFNILTTYALNHPTVSYCQGMSDLASPLLVTMGDEAHAYICLCALMTRLYPNFLLDGEAMTLKFSHLTESLQVYDPDFYNYLKLQQADDLLFCYRWLLLEMKREFAFDDALRMLEVLWASLPQKIPGLELSLKEKEFDPVDDLADEPPPSSPLLKTPRENAYTKVCAIRRQSSSFSLANVKAPKLATSNQMNHSLDENVTRKVSVNSSLKHSKEFQSLDDATLHMQNAKFDRHDEYATKENGLSPKDSKGQTRRSMKSVPENTKAEIQDTLSTAWSSTGNLMNGSPHADPSKETPLGNQIRILRNKISVHNSKFFSSLEKLNDTENSEFPEKPKIKMIKNLNEFLNFATGSKINTQHAQLQRTKSAVDNASYLDCPRITLTKTDNKKRSFKEDSLKMNINKNTCPETNEGSSPDDSQEYYPMNTSMTRELRLELEHLDRQVFGPSYINRRSMLCDSPSDSFSVDDKLSINQFKEVKPECRTSDVLDPHIEVTEVKEMVKKSPLLETGKSNARSAEDIYLWENPLHRNTPTTRTSASCPQTPDEQADLDFDGDTGEIIEEHFGKKSVTPIKLLRKIQSADAHDSFKITKQSDVNSSNSDVSDKHVTQLEEIQSMNNQQEISNNSRSQNFFSSMSQELENARKNCESLLSVRQPNLHSVASTINNFQKKYEVLKPPPQRNTNVSPIVGDASTKTSISSLPPPAVFGGGNPFLMFLCLTVLLQHRDYIMRNRMDYNELAMHFDKMVRKHNVNRVLNQARQMYAIYLKHQAHKIADVATWPIMYPDDQIMYYKPICKKNVL

Summary

EMBL
BABH01010447    BABH01010448    NWSH01001291    PCG71831.1    KZ149933    PZC77254.1    + More
ODYU01012632    SOQ59052.1    KQ459598    KPI94721.1    KQ461196    KPJ06429.1    AGBW02009514    OWR50633.1    JTDY01002298    KOB71711.1    PCG71829.1    NEVH01002992    PNF40984.1    PNF40988.1    KQ971343    EFA04487.1    AJWK01011026    GEZM01096974    JAV54474.1    PNF40986.1    APGK01057245    APGK01057246    APGK01057247    APGK01057248    KB741279    ENN71042.1    AJVK01017742    KK852944    KDR13484.1    KZ288253    PBC30955.1    GL446154    EFN88391.1    KQ434777    KZC04193.1    QOIP01000003    RLU24861.1    KK107144    EZA57594.1    KQ976440    KYM86497.1    ADTU01005012    GL437497    EFN70357.1    KQ761797    OAD56786.1    KQ980404    KYN16202.1    KQ435853    KOX70666.1    KQ414621    KOC67572.1    KQ977580    KYN01756.1    KQ981856    KYN34640.1    UFQT01000729    SSX26771.1    KQ982330    KYQ57671.1    CP012524    ALC41979.1    UFQS01000786    UFQT01000786    SSX06873.1    SSX27217.1    CM000158    EDW91135.1    CM000362    CM002911    EDX07196.1    KMY93965.1    CH954179    EDV55924.1    PYGN01000662    PSN42621.1    AE013599    BT021421    AAF58149.3    AAX33569.1    LBMM01000101    KMR04947.1    CH480816    EDW47974.1    CM000071    EAL24685.2    CH479181    EDW31346.1    DS235045    EEB10940.1   
Pfam
PF00566   RabGAP-TBC
Interpro
IPR035969   Rab-GTPase_TBC_sf        + More
IPR000195   Rab-GTPase-TBC_dom       
SUPFAM
SSF47923   SSF47923       
PDB
5TUC     E-value=8.31617e-46,     Score=467

Ontologies

Topology

Length:
1100
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
15.56638
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00013
outside
1  -  1100
 
 

Population Genetic Test Statistics

Pi
183.171956
Theta
157.778817
Tajima's D
0.303389
CLR
0.63075
CSRT
0.459427028648568
Interpretation
Possibly Positive selection
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