Gene

KWMTBOMO02116

Pre Gene Modal

BGIBMGA002998

Annotation

PREDICTED:_transport_and_Golgi_organization_protein_6-like_[Bombyx_mori]

Location

Bomo_Chr4(+):12454173-12460397      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.753

CDS

ATGTCAGAAATAAAACATATATTTACTAAATTGGAAAATTTCCAACAAAAAGATGGTCCTAATACATTCATATCAATGTTCATTAATGAGCATACTAAAAACCTAGATAAAACTAAAGGAGAACCTGATTTTGACAACTATGTTCTATTGAAAGATCTTTTACATAAAATATTCGAGGGAATAGATGAGCTAGCGACAGAAATAAGAAAGGATGATACTCTATTGATAAGTGTTAAACAACAGAAAGTTCTAAGAACATGCTTCCAGTTGGTAGCATCGCTTGGTGTTTCAACATGCCTTATACCTGGACTAGGAATTTCTATTTCAAAAAGATGCTCGTTTTCAAATACAATTCCTTCCTTTAATTTAAGTCAAGAACAAAAATATTCAATATTAGTTGATTGTACAGATTTTATTCACAGGTCATACGAAATACCTGTCTATAAAAACATAATAATGACCTTACATTTGTCTGACTACTTAGCAGCTCTAATACAATTGTCGTTTGCTCAGTTGAAGAAACCAGGAACATATAAGGACTTTGTCATGACTGAAGAAATGTACAAAACATTCACTAATGATAGACAAAAGTATCTAAAAATCTATGATAATTTAGTAAGTACCTGTTTCCAGCCTACACTCATGAAAGAGTTGCTTGTATTACAGAGTATAACAGATCCGACACCTCCGGCCTTTCTTCAGAGGGTAATTTCAAATGAGATGAGTAAAAGATTGTTGGCCTCAGGTGGATTGTTAAGTTTGATAAGATGCTTCATTGAAAGCTATAATGCTGATACTGGTTGTGAATGGAAAAAAATTGATATGATCTGCAGGATAGTATCAGTTGTGCATAAAGGTTACTCTAAAACTGATTACTTAAAAAACATGTGTTCACAGTTGAAACAAGTTTTATCCTTAAACAATAGACAGTACTCATCAACTGGTATAGCTTGTTTACTTACACTATATGACAAGTACAAAGATGATATATCTGTTTCTGACTTGGTCAAAGGAACATTCAACACATTAAACTATGAAACTATGATTTCTAACTCTAAACTACCTGGCACTGTTATTTTTTCTCCACAAGAAATAGAACAAAAAATCAATATTCTACATTCATGTACATATTTGAAGATAGATTGGCCTGCGGAATTAATAAAACCTAATATTTATGTATTATTCTTAATTGGAGCAAGGTGTACAAAGAATGTAGATATGCAAACAAAAGTAAAAGAGCTACTATTGAGATGTATGGAACAATTAAATAAAGAGGAAGTTTCAAGTATAATGTATAAAATTTTAATTGAACAAGATCATCTACAGTCATCAGATATATTGGTTGAAGAATATGATGCTGGAGTCACTATAAAAGCAATCTCAGAGAGACCTGTGTTAAAGAAAGACCAGTTACTTATTTATTTCTTGAAACTATTTGAAGCTTCAGGTGATAGTTTGTTTGTTGCCAATGTCTTTGAGGTCTCCTTATTGATAGCTACAGAGTTAAATATACAGAGGAAAAAAAAGCCAAATAAAGATATGCTGTTGGTAGAAGATGATGATCCACTATTGATTGATAAAATTGATGAGCAATATGCCTTAATATTGCAGTTACTCTCTGAGATATCCAACACACCCAAAATAACTAGCACATTAAAAAAGAACCCTCTCATTGTAGTTCAATTTATAGAATATTTCATTGTCCAAAATTACAATTCAGAAGAAGAATGCTCCACAGTCGCTTTAGTTCTTTTGAATGTAATTTTGTCAAATGCTATAAAGGGGGACAGTTTGCAAAGTACATTGGATCGACTGAAACCTGTGTTGGACAAAATATCAAAAGATTACTCTAATTATAACCATTTGCTTGCCAAAGAAGCCCTGTCCTACATCAACACTGGGAATTGTGAGAAAATAAATTCCAGATATGAAAAAGCTGTGGCAGATGTATTTGACAGCTTAGTACCGGTCAGAGCTCATGGACTCATTGAACTGACAAAGCTAATAGATTCTGCTGATCCTGAGACTATTTCTAAAAAGCATTACATATTCTGCATATTTCAGGAACTACTTAAAGACAATGACTCTTACATTTATCTATCAGCTATAAATGGCTTAGCTTCACTGTGTATCCATTGTACTGAAGACGTCCTGCATGTACTGTGTAAAGAATTCCTAAAACAAGTTTTAGAACAGAATCAAATAGTCACTCAAGAAGTCGAAAACAAAATAGCAGAATTGAGAATGAAAATTGGTGATGTTATTGTTCAAGTAACAAAAAGGCTAGGTGATATGGCAATCGTGCATAAAACGGTACTCCTCAATACAATGCTGTGTGGATGTCGAGATGATGATCCACTAATCAGAACATCTGCTATCTCCAATTTAGCTGAAATAGCTAGAGTCCTGCACTATAAGATGGGTACTATTATTTATGAGGTTTTACTCTGTATTTGGAATATCATAGGAACCGACAACGCAGTAGAATGCAGACGGGCCGCCGTCATGGTGATCGCCAATTTAATAAAGGGCCTCGGAAAAGAAACGCTACTTGAACTCAAAGATAATTTACTACCGATTTATAGGTCATTGAAAAATGTATACAGAGACGAAAATGAGGATCCGGTTTTGAGGCTCCACGCTCAGCTGGCCTTGGAAGAACTGAACGATGTCGTTAAAGATTTTCTATTTCCAGAAATAAAAATGGAAAAACAAATATTTGTTATCGATCGACCGGACGTTGTGTATAAATAA

Protein

MSEIKHIFTKLENFQQKDGPNTFISMFINEHTKNLDKTKGEPDFDNYVLLKDLLHKIFEGIDELATEIRKDDTLLISVKQQKVLRTCFQLVASLGVSTCLIPGLGISISKRCSFSNTIPSFNLSQEQKYSILVDCTDFIHRSYEIPVYKNIIMTLHLSDYLAALIQLSFAQLKKPGTYKDFVMTEEMYKTFTNDRQKYLKIYDNLVSTCFQPTLMKELLVLQSITDPTPPAFLQRVISNEMSKRLLASGGLLSLIRCFIESYNADTGCEWKKIDMICRIVSVVHKGYSKTDYLKNMCSQLKQVLSLNNRQYSSTGIACLLTLYDKYKDDISVSDLVKGTFNTLNYETMISNSKLPGTVIFSPQEIEQKINILHSCTYLKIDWPAELIKPNIYVLFLIGARCTKNVDMQTKVKELLLRCMEQLNKEEVSSIMYKILIEQDHLQSSDILVEEYDAGVTIKAISERPVLKKDQLLIYFLKLFEASGDSLFVANVFEVSLLIATELNIQRKKKPNKDMLLVEDDDPLLIDKIDEQYALILQLLSEISNTPKITSTLKKNPLIVVQFIEYFIVQNYNSEEECSTVALVLLNVILSNAIKGDSLQSTLDRLKPVLDKISKDYSNYNHLLAKEALSYINTGNCEKINSRYEKAVADVFDSLVPVRAHGLIELTKLIDSADPETISKKHYIFCIFQELLKDNDSYIYLSAINGLASLCIHCTEDVLHVLCKEFLKQVLEQNQIVTQEVENKIAELRMKIGDVIVQVTKRLGDMAIVHKTVLLNTMLCGCRDDDPLIRTSAISNLAEIARVLHYKMGTIIYEVLLCIWNIIGTDNAVECRRAAVMVIANLIKGLGKETLLELKDNLLPIYRSLKNVYRDENEDPVLRLHAQLALEELNDVVKDFLFPEIKMEKQIFVIDRPDVVYK

Uniprot

A0A1E1VXI2   A0A2H1V200   A0A0L7KYU7   A0A194QLJ5   A0A212ESS0   A0A2W1BQI1   + More
A0A2A4JK96   A0A194PUB0   A0A310SES9   A0A067RJ24   A0A3L8DLP8   E2A103   A0A0J7KK18   A0A154P9H0   A0A088A294   D6WL57   A0A1B6DUB8   E2BKL9   A0A0L7QLX2   A0A1Y1LB53   A0A158NJZ1   A0A195BIV9   A0A195DZM4   F4WIK1   A0A195F3X9   A0A151I874   A0A151XE64   A0A2R7VWI8   A0A1B6LQH4   E9JCD5   A0A0A9XKS9   A0A146M944   A0A026WC48   T1HXH9   J9K9F8   A0A2S2P6C7   A0A0P6A882   A0A0P5KI44   A0A0P5PL49   A0A2H8TGW7   E9GD13   H3AEV0   A0A1B0GIW3   A0A1B0D261  

Pubmed

26227816    26354079    22118469    28756777    24845553    30249741    + More
20798317    18362917    19820115    28004739    21347285    21719571    21282665    25401762    26823975    24508170    21292972    9215903   

EMBL

GDQN01011652    JAT79402.1    ODYU01000329    SOQ34878.1    JTDY01004214    KOB68448.1    + More
KQ461196    KPJ06433.1    AGBW02012723    OWR44543.1    KZ149933    PZC77258.1    NWSH01001291    PCG71822.1    KQ459598    KPI94725.1    KQ761976    OAD56408.1    KK852655    KDR19305.1    QOIP01000006    RLU21112.1    GL435626    EFN73056.1    LBMM01006423    KMQ90617.1    KQ434847    KZC08467.1    KQ971343    EFA04066.1    GEDC01008027    JAS29271.1    GL448819    EFN83717.1    KQ414902    KOC59653.1    GEZM01062630    JAV69570.1    ADTU01018481    KQ976465    KYM84274.1    KQ980031    KYN18157.1    GL888176    EGI65937.1    KQ981820    KYN35285.1    KQ978390    KYM94323.1    KQ982254    KYQ58649.1    KK854134    PTY11873.1    GEBQ01014001    JAT25976.1    GL771786    EFZ09528.1    GBHO01022272    JAG21332.1    GDHC01003549    JAQ15080.1    KK107282    EZA53553.1    ACPB03015499    ABLF02018588    ABLF02018589    GGMR01012129    MBY24748.1    GDIP01045942    LRGB01000944    JAM57773.1    KZS14600.1    GDIQ01190750    JAK60975.1    GDIQ01206901    GDIQ01126922    JAL24804.1    GFXV01001562    MBW13367.1    GL732539    EFX82653.1    AFYH01209525    AFYH01209526    AFYH01209527    AFYH01209528    AFYH01209529    AFYH01209530    AFYH01209531    AFYH01209532    AFYH01209533    AJWK01017711    AJVK01002755   

Proteomes

UP000037510    UP000053240    UP000007151    UP000218220    UP000053268    UP000027135    + More
UP000279307    UP000000311    UP000036403    UP000076502    UP000005203    UP000007266    UP000008237    UP000053825    UP000005205    UP000078540    UP000078492    UP000007755    UP000078541    UP000078542    UP000075809    UP000053097    UP000015103    UP000007819    UP000076858    UP000000305    UP000008672    UP000092461    UP000092462   

Pfam

PF10363   RTP1_C1        + More
PF10304   RTP1_C2
PF00397   WW
PF00106   adh_short
PF02985   HEAT

Interpro

IPR039600   TANGO6/Rtp1        + More
IPR016024   ARM-type_fold       
IPR019414   Rtp1_C2       
IPR019451   Rtp1_C1       
IPR011989   ARM-like       
IPR002347   SDR_fam       
IPR001202   WW_dom       
IPR036020   WW_dom_sf       
IPR036291   NAD(P)-bd_dom_sf       
IPR000357   HEAT       

SUPFAM

SSF48371   SSF48371        + More
SSF51735   SSF51735       
SSF51045   SSF51045       

Gene 3D

1.25.10.10    

CDD

cd00201  WW

ProteinModelPortal

A0A1E1VXI2   A0A2H1V200   A0A0L7KYU7   A0A194QLJ5   A0A212ESS0   A0A2W1BQI1   + More
A0A2A4JK96   A0A194PUB0   A0A310SES9   A0A067RJ24   A0A3L8DLP8   E2A103   A0A0J7KK18   A0A154P9H0   A0A088A294   D6WL57   A0A1B6DUB8   E2BKL9   A0A0L7QLX2   A0A1Y1LB53   A0A158NJZ1   A0A195BIV9   A0A195DZM4   F4WIK1   A0A195F3X9   A0A151I874   A0A151XE64   A0A2R7VWI8   A0A1B6LQH4   E9JCD5   A0A0A9XKS9   A0A146M944   A0A026WC48   T1HXH9   J9K9F8   A0A2S2P6C7   A0A0P6A882   A0A0P5KI44   A0A0P5PL49   A0A2H8TGW7   E9GD13   H3AEV0   A0A1B0GIW3   A0A1B0D261  

KEGG

101736468    no KO assigned | (RefSeq) transport and Golgi organization protein 6-like

GO

GO:0016021   GO:0009306   GO:0005488   GO:0030150   GO:0006355   GO:0009072   GO:0003824   GO:0006520   GO:0008483   GO:0006418   GO:0016507   GO:0048384  

PANTHER

PTHR20959  

Length:

917

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

8.73544999999996

Exp number, first 60 AAs:

0

Total prob of N-in:

0.36957

outside

1  -  917

 

 

Pi

270.095347

Theta

235.152292

Tajima's D

0.302156

CLR

0.099347

CSRT

0.449677516124194

Interpretation

Uncertain