Gene

KWMTBOMO02113

Pre Gene Modal

BGIBMGA002997

Annotation

PREDICTED:_PQ-loop_repeat-containing_protein_1_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr4(+):12385833-12396147      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.964

CDS

ATGGATTGGATTATTTCCGATGAGTTGGGGCTCACTGTGGGCCATCTGGTGGGCTTTGGAGCTGCTGGTGCTATGATAATAGGAGGTGTCGCTCCATATATCCCTCAATATAGACAAATTAAAAAGACGCAAGATGCTGAAGGATTCTCTTTGTATGTGTGTTTAGCTCTTCTAATAGCCAACACTTTGAGGATATTGTTTTGGTTTGGAAAACGTTATGAATTACCCTTGTTAATTCAAAGCATTGTAATGAATGTGACTATGTTTGTTATGATTCATCTTTGTGTGTCAGTTCGAAAAAAGAACCAGATTATCAGAGCAAGAGAAAGAATATTCACAGATATGGAAAGGAAGTACTTCTGGGCGTGGACAGACTTCCAGAGTTACGTGGACTGCATGCTCGTTTTCTCGGTATTGGGCGCGGCTGTCACATATCTCTTGATAGAGTTCTCTCCGTTCGTGGAGTTGATTGGCTTCATGGCGGTTTTCACTGAGGCTATGCTCGGTGCACCACAAATAGCCAAGAACTTACAGAATAAAAGTACTGAAGGAATGAGTGTCAGCATGGTGATAATGTGGACGTGTGGCGACATTTTTAAGACTGCATACTTTATTATTAGAGAGGCTCCAACGCAATTCTGGGTTTGTGGCGGCCTACAAGTCTTCCTTGATGTCGTTATTTTATTCCAAGTGTGGTTATACCGTCACAACACGGCGGCGGCTCGAAGGTTGCGGCGAGGCGACTAA

Protein

MDWIISDELGLTVGHLVGFGAAGAMIIGGVAPYIPQYRQIKKTQDAEGFSLYVCLALLIANTLRILFWFGKRYELPLLIQSIVMNVTMFVMIHLCVSVRKKNQIIRARERIFTDMERKYFWAWTDFQSYVDCMLVFSVLGAAVTYLLIEFSPFVELIGFMAVFTEAMLGAPQIAKNLQNKSTEGMSVSMVIMWTCGDIFKTAYFIIREAPTQFWVCGGLQVFLDVVILFQVWLYRHNTAAARRLRRGD

Similarity

Belongs to the mitochondrial carrier (TC 2.A.29) family.

Uniprot

A0A194PP19   A0A212ESR8   A0A2W1BSF3   A0A2A4JK92   A0A2H1V213   A0A2A4JK47   + More
A0A0L7L6V1   A0A1W4WPN7   A0A1Y1KK72   A0A0P6IY46   A0A1Q3G333   V5GVZ2   A0A1W4WEP2   D6WL54   H9J0G0   Q16H43   N6U2K1   A0A067R3A7   A0A0T6B9A8   M9PCT0   A0A336MCR7   A0A336MDZ3   A0A0A9Y8U0   A0A084VUV0   A0A194QSB7   A0A0C9Q459   A0A224XVT8   A0A0V0GBB7   A0A069DY74   A0A0P4VR75   A0A154P3J4   A0A0A9Y3E6   T1I8R9   E0VU25   A0A0L7R723   A0A1D2N9A5   A0A0M9A7L1   A0A026WSY8   A0A088A050   A0A2S2Q224   J9K1Z6   A0A2S2NUV3   A0A2H8TVL1   C1C1Y7   K7J8Z5   A0A1B6C566   A0A0C9R7M9   A0A195FFQ3   A0A195EHE8   A0A158NHT2   A0A195CB40   A0A1B6DYC7   A0A310SC40   D3PIA6   A0A2C9MAH8   A0A2P8YFM6   A0A0K2UIM5   A0A1B6DX13   E2B7P7   A0A1B6CNH0   A0A1L8D9G7   A0A1B6M0U5   C1C346   A0A1S3H9J0   A0A0J7LAH6   E2AZQ4   A0A1B6LAI5   A0A0K2UHU9   A0A1B6KNG3   A0A2R8QPC7   A0A1B6HJL5   A0A1B6GIW7   A0A2C9MAI4   A0A293LX57   L7M7W3   A0A232FCN9   A0A1B6CM02   A0A1B6HUQ8   A0A131YP54   A0A218UZW1   A0A1B6L4U3   A0A224Z6E5   A0A2A3E5Z2   A0A131XAU5   H2ZPZ5   A0A146VM22   A0A2T7NIZ7   A0A3B3XPK2   A0A3B3UG10   A0A146MS23   W5MPF3   A0A0P4WGL3   A0A087Y3M3   A0A0P4WNM6   A0A1V4KEE2   A0A3Q0H901   A0A1B6LPK4   A0A3P9PRM3   A0A1L8FSJ8   A0A1B6KYW5  

Pubmed

26354079    22118469    28756777    26227816    28004739    26999592    + More
18362917    19820115    19121390    17510324    23537049    24845553    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    25401762    24438588    26334808    27129103    26823975    20566863    27289101    24508170    30249741    20075255    21347285    15562597    29403074    20798317    23594743    25576852    28648823    26830274    28797301    28049606    27762356   

EMBL

KQ459598    KPI94728.1    AGBW02012723    OWR44546.1    KZ149933    PZC77261.1    + More
NWSH01001190    PCG72196.1    ODYU01000329    SOQ34880.1    PCG72199.1    JTDY01002634    KOB71046.1    GEZM01081194    JAV61809.1    GDUN01000195    JAN95724.1    GFDL01000817    JAV34228.1    GALX01002589    JAB65877.1    KQ971343    EFA04063.1    BABH01010455    BABH01010456    CH478207    EAT33561.1    APGK01044975    APGK01044976    KB741028    ENN74851.1    KK852727    KDR17614.1    LJIG01003005    KRT83935.1    AE014134    AGB92710.1    UFQT01000775    SSX27141.1    SSX27139.1    GBHO01017448    GBHO01014117    GBRD01007714    JAG26156.1    JAG29487.1    JAG58107.1    ATLV01017023    ATLV01017024    ATLV01017025    ATLV01017026    KE525143    KFB41744.1    KQ461196    KPJ06436.1    GBYB01008823    JAG78590.1    GFTR01004307    JAW12119.1    GECL01000700    JAP05424.1    GBGD01002560    JAC86329.1    GDKW01001549    JAI55046.1    KQ434809    KZC06441.1    GBHO01017445    GBHO01017443    GDHC01002232    JAG26159.1    JAG26161.1    JAQ16397.1    ACPB03014000    DS235778    EEB16881.1    KQ414643    KOC66675.1    LJIJ01000137    ODN01832.1    KQ435719    KOX78857.1    KK107109    QOIP01000008    EZA59165.1    RLU19157.1    GGMS01002488    MBY71691.1    ABLF02032747    GGMR01008326    MBY20945.1    GFXV01006154    MBW17959.1    BT080866    ACO15290.1    GEDC01028671    JAS08627.1    GBYB01008822    JAG78589.1    KQ981636    KYN38854.1    KQ978957    KYN27284.1    ADTU01016037    KQ978023    KYM98079.1    GEDC01006606    JAS30692.1    KQ764717    OAD54428.1    BT121362    ADD38292.1    PYGN01000636    PSN43043.1    HACA01020436    CDW37797.1    GEDC01007093    JAS30205.1    GL446201    EFN88260.1    GEDC01022292    JAS15006.1    GFDF01011059    JAV03025.1    GEBQ01026896    GEBQ01010421    JAT13081.1    JAT29556.1    BT081275    ACO15699.1    LBMM01000040    KMR05201.1    GL444277    EFN61033.1    GEBQ01019264    GEBQ01009914    JAT20713.1    JAT30063.1    HACA01020437    CDW37798.1    GEBQ01027010    GEBQ01026467    JAT12967.1    JAT13510.1    FO704753    GECU01032905    JAS74801.1    GECZ01007404    JAS62365.1    GFWV01008574    MAA33303.1    GACK01005840    JAA59194.1    NNAY01000412    OXU28586.1    GEDC01022822    JAS14476.1    GECU01029341    JAS78365.1    GEDV01008876    JAP79681.1    MUZQ01000083    OWK59166.1    GEBQ01021326    GEBQ01001814    JAT18651.1    JAT38163.1    GFPF01010724    MAA21870.1    KZ288379    PBC26589.1    GEFH01005069    JAP63512.1    GCES01067829    JAR18494.1    PZQS01000012    PVD21149.1    GCES01163841    JAQ22481.1    AHAT01020226    AHAT01020227    AHAT01020228    GDRN01057211    JAI65722.1    AYCK01010293    AYCK01010294    AYCK01010295    GDRN01057213    GDRN01057212    GDRN01057210    GDRN01057209    JAI65724.1    LSYS01003422    OPJ82788.1    GEBQ01014317    GEBQ01010148    JAT25660.1    JAT29829.1    CM004477    OCT74543.1    GEBQ01023340    GEBQ01006536    JAT16637.1    JAT33441.1   

Proteomes

UP000053268    UP000007151    UP000218220    UP000037510    UP000192223    UP000007266    + More
UP000005204    UP000008820    UP000019118    UP000027135    UP000000803    UP000030765    UP000053240    UP000076502    UP000015103    UP000009046    UP000053825    UP000094527    UP000053105    UP000053097    UP000279307    UP000005203    UP000007819    UP000002358    UP000078541    UP000078492    UP000005205    UP000078542    UP000076420    UP000245037    UP000008237    UP000085678    UP000036403    UP000000311    UP000000437    UP000215335    UP000197619    UP000242457    UP000007875    UP000245119    UP000261480    UP000261500    UP000018468    UP000028760    UP000190648    UP000189705    UP000242638    UP000186698   

PRIDE

H9J0G0    M9PCT0   

Pfam

PF04193   PQ-loop        + More
PF00153   Mito_carr

Interpro

IPR006603   PQ-loop_rpt        + More
IPR018108   Mitochondrial_sb/sol_carrier       
IPR023395   Mt_carrier_dom_sf       
IPR002067   Mit_carrier       

SUPFAM

SSF103506   SSF103506       

Gene 3D

1.50.40.10    

ProteinModelPortal

A0A194PP19   A0A212ESR8   A0A2W1BSF3   A0A2A4JK92   A0A2H1V213   A0A2A4JK47   + More
A0A0L7L6V1   A0A1W4WPN7   A0A1Y1KK72   A0A0P6IY46   A0A1Q3G333   V5GVZ2   A0A1W4WEP2   D6WL54   H9J0G0   Q16H43   N6U2K1   A0A067R3A7   A0A0T6B9A8   M9PCT0   A0A336MCR7   A0A336MDZ3   A0A0A9Y8U0   A0A084VUV0   A0A194QSB7   A0A0C9Q459   A0A224XVT8   A0A0V0GBB7   A0A069DY74   A0A0P4VR75   A0A154P3J4   A0A0A9Y3E6   T1I8R9   E0VU25   A0A0L7R723   A0A1D2N9A5   A0A0M9A7L1   A0A026WSY8   A0A088A050   A0A2S2Q224   J9K1Z6   A0A2S2NUV3   A0A2H8TVL1   C1C1Y7   K7J8Z5   A0A1B6C566   A0A0C9R7M9   A0A195FFQ3   A0A195EHE8   A0A158NHT2   A0A195CB40   A0A1B6DYC7   A0A310SC40   D3PIA6   A0A2C9MAH8   A0A2P8YFM6   A0A0K2UIM5   A0A1B6DX13   E2B7P7   A0A1B6CNH0   A0A1L8D9G7   A0A1B6M0U5   C1C346   A0A1S3H9J0   A0A0J7LAH6   E2AZQ4   A0A1B6LAI5   A0A0K2UHU9   A0A1B6KNG3   A0A2R8QPC7   A0A1B6HJL5   A0A1B6GIW7   A0A2C9MAI4   A0A293LX57   L7M7W3   A0A232FCN9   A0A1B6CM02   A0A1B6HUQ8   A0A131YP54   A0A218UZW1   A0A1B6L4U3   A0A224Z6E5   A0A2A3E5Z2   A0A131XAU5   H2ZPZ5   A0A146VM22   A0A2T7NIZ7   A0A3B3XPK2   A0A3B3UG10   A0A146MS23   W5MPF3   A0A0P4WGL3   A0A087Y3M3   A0A0P4WNM6   A0A1V4KEE2   A0A3Q0H901   A0A1B6LPK4   A0A3P9PRM3   A0A1L8FSJ8   A0A1B6KYW5  

PDB

4Q7C     E-value=0.0460379,     Score=83

KEGG

101742465    no KO assigned | (RefSeq) PQ-loop repeat-containing protein 1

GO

GO:0016021   GO:0005802   GO:0042147   GO:0005829   GO:0045332   GO:0005768   GO:0022857  

Length:

248

Number of predicted TMHs:

7

Exp number of AAs in TMHs:

144.62714

Exp number, first 60 AAs:

35.48352

Total prob of N-in:

0.00337

POSSIBLE N-term signal

sequence

outside

1  -  12

TMhelix

13  -  35

inside

36  -  47

TMhelix

48  -  70

outside

71  -  75

TMhelix

76  -  98

inside

99  -  125

TMhelix

126  -  148

outside

149  -  151

TMhelix

152  -  171

inside

172  -  183

TMhelix

184  -  206

outside

207  -  210

TMhelix

211  -  233

inside

234  -  248

 

 

Pi

373.452062

Theta

217.614525

Tajima's D

0.762918

CLR

0.561422

CSRT

0.588020598970052

Interpretation

Uncertain