Silkworm Genome Informatics Database

Gene

KWMTBOMO02106

Pre Gene Modal

BGIBMGA003172

Annotation

PREDICTED:_T-box_transcription_factor_TBX20-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr4(-):12290053-12299102 View in EpiBrowser

Transcription factor

T-box

Location in the cell

Nuclear Reliability : 2.697

CDS

ATGGATGTGGAAAACGCCGAGTGCTGGAAGTCGGGAGGAGACAGGATGGTGGCAGAAGAGGGAAAGACAAGAGCTACAGACTTTTCGATCGCGGCCATCATGGCTCGCAGCGCGGTAGAACGGCGCAGTCCGGACGCGCGTTCCCCGCCACACACAGGGTTAGGATCTCGGCAGAGTTCGCCCGCGTCATTGAGCTCTCCCGCGTCGAGCTGCAGGTCGCCCATACCTGACGAGGACGTCGAGGTGGACGTGGAACAGTGTTCGGATGGCGAGAGAGACGCGTCTGATCACGCCGCACCCTCACCCGCCCCATCTTCAGAATTAGGCGAACGTGATACCCCCTCACCGGCCAGACCGCTTCCTCCAGCCACATCTTGCAATTGCGAAGAACTTCTGTCCGTGGACTGTCAACTGGAGACCAAAGAGCTTTGGGACAAATTTCATGACCTCGGTACAGAAATGATCATCACTAAAACTGGCAGGTAA

Protein

MDVENAECWKSGGDRMVAEEGKTRATDFSIAAIMARSAVERRSPDARSPPHTGLGSRQSSPASLSSPASSCRSPIPDEDVEVDVEQCSDGERDASDHAAPSPAPSSELGERDTPSPARPLPPATSCNCEELLSVDCQLETKELWDKFHDLGTEMIITKTGR

Similarity

Belongs to the glycosyl hydrolase 18 family.

Uniprot

A0A2H1WEH0 A0A2W1BVP2 A0A0L7LNW8 A0A2A4JKF7 A0A194QLN7 A0A194PPS3 + More
A0A212EST3 A0A139WGT3 A0A0T6B9K3 A0A1Y1L579 T1HBV3 A0A1J1I6V0 A0A1W4WQM9 A0A182F1U0 A0A1B0CH35 A0A336MNJ7 T1J4A7 A0A1B6CF21 W5J5V1 A0A1I8P827 A0A1I8N0K9 A0A1B0AYU7 A0A1A9XEF4 A0A1I8MZE8 A0A1A9UYK5 A0A1A9WXR8 A0A1B0A4B8

Pubmed

28756777 26227816 26354079 22118469 18362917 19820115 + More
28004739 20920257 23761445 25315136

EMBL

ODYU01008125 SOQ51463.1 KZ149933 PZC77267.1 JTDY01000445 KOB77142.1 + More
NWSH01001190 PCG72208.1 KQ461196 KPJ06442.1 KQ459598 KPI94734.1 AGBW02012723 OWR44552.1 KQ971343 KYB27173.1 LJIG01002924 KRT84016.1 GEZM01068887 JAV66716.1 ACPB03001433 CVRI01000038 CRK94145.1 AJWK01011964 UFQS01001402 UFQT01000879 UFQT01001402 SSX10701.1 SSX27794.1 SSX30383.1 JH431841 GEDC01025241 JAS12057.1 ADMH02002152 ETN58245.1 JXJN01005973

Proteomes

UP000037510 UP000218220 UP000053240 UP000053268 UP000007151 UP000007266 + More
UP000015103 UP000183832 UP000192223 UP000069272 UP000092461 UP000000673 UP000095300 UP000095301 UP000092460 UP000092443 UP000078200 UP000091820 UP000092445

Pfam

PF00907   T-box        + More
PF00147   Fibrinogen_C
PF00704   Glyco_hydro_18

Interpro

IPR008967   p53-like_TF_DNA-bd        + More
IPR001699   TF_T-box
IPR036960   T-box_sf
IPR018186   TF_T-box_CS
IPR002070   TF_Brachyury
IPR014716   Fibrinogen_a/b/g_C_1
IPR002181   Fibrinogen_a/b/g_C_dom
IPR017853   Glycoside_hydrolase_SF
IPR011583   Chitinase_II
IPR036056   Fibrinogen-like_C
IPR029070   Chitinase_insertion_sf
IPR001223   Glyco_hydro18_cat

SUPFAM

SSF49417   SSF49417        + More
SSF51445   SSF51445
SSF56496   SSF56496

Gene 3D

2.60.40.820 3.10.50.10 3.90.215.10

CDD

cd00182 TBOX

ProteinModelPortal

A0A2H1WEH0 A0A2W1BVP2 A0A0L7LNW8 A0A2A4JKF7 A0A194QLN7 A0A194PPS3 + More
A0A212EST3 A0A139WGT3 A0A0T6B9K3 A0A1Y1L579 T1HBV3 A0A1J1I6V0 A0A1W4WQM9 A0A182F1U0 A0A1B0CH35 A0A336MNJ7 T1J4A7 A0A1B6CF21 W5J5V1 A0A1I8P827 A0A1I8N0K9 A0A1B0AYU7 A0A1A9XEF4 A0A1I8MZE8 A0A1A9UYK5 A0A1A9WXR8 A0A1B0A4B8

PDB

4A04 E-value=3.91187e-05, Score=107

KEGG

101738629 K10185 T-box protein 20 | (RefSeq) T-box transcription factor TBX20-like

GO

GO:0003700 GO:0003677 GO:0005634 GO:0016021 GO:0008061 GO:0005975 GO:0006355 GO:0009072 GO:0003824 GO:0006520 GO:0008483 GO:0006418 GO:0016507 GO:0048384

PANTHER

PTHR11267

Subcellular location

Nucleus

Length:

161

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00052

Exp number, first 60 AAs:

0.00052

Total prob of N-in:

0.36838

outside

1 - 161

Pi

284.072104

Theta

168.43534

Tajima's D

1.73558

CLR

0.145914

CSRT

0.84010799460027

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics