Silkworm Genome Informatics Database

Gene

KWMTBOMO02105

Pre Gene Modal

BGIBMGA002994

Annotation

PREDICTED:_T-box_transcription_factor_TBX20-like_[Amyelois_transitella]

Location

Bomo_Chr4(+):12136758-12178502 View in EpiBrowser

Transcription factor

T-box

Location in the cell

Nuclear Reliability : 3.2

CDS

ATGGGATGTTCGGAAGGTGACAAGTTGTGGACTCCGAACGGCGGACTGGGCTCAGAGGGGACTAACTTGATGCTGCTACAAGGCGAGGGTCGAGATCGGCAGGGGCACGCCATGGAGGAAGACTGCTCCGCGCGCCCCTGTGCTACAGACTTCTCCATCGCAGCCATAATGGCAAGAGATAGACAAGAGCGAAGAGAGAGGCGGAGACATAGAGATCCCCGAGAAGATACTCTTACTCCACTAGAGAAATTCGTAGACGCGACAGCGTCTGCTTCAGGATCGCCGTCACCGCCTCTGGTTGAATTCGAGAGAGACTCTCCGGTGGACGTTTCCTCAACTTCCGAGGCCGGGTCTGCCAGTGGTACCGCTGGCGGATCGAGAGCCGTCTCACCCCCTCCTCGTAATCCGCAGCTGGTTGAGCGATGGTCCAGCGAGGAGATGCGCCACATACAATGCCACCTCGAAACTAAGGAACTTTGGGACAAATTCAACGAACTCGGAACTGAAATGATAATCACGAAGACTGGAAGGCGAATGTTTCCGACGGTGCGCGTGTCGTTCGCTGGCTGCCGGGCGGAAGCGCGGTACGGCGTGCTGCTGGACGTGGTGCCGGTGGACGGCAAGCGCTACCGGTACGCGTACCACCGCTCCTCGTGGCTCGTCGCCGGCAAGGCGGACCCGCCAGCACCCGCGCGGCTCTATCCGCATCCCGACTCGCCCTTCTCCGGCGACCAGCTCCGCAAGCAGGTCGTCTCTTTCGAGAAGGTCAAACTCACCAACAACGAAATGGACAAAAACGGACAGCTAGTACTAAATTCGATGCACAAATATCAGCCTCGGATTCACTTGGTGCTCCGACGAGAGGGCGCCGTCAACGCGCCCATCACCGATCTCGAACAAGAAGAATTCAAGACCTTCATATTTCCCGAATGCGTCTTCACGGCTGTCACAGCGTACCAGAACCAGCTCATCACGAAATTGAAAATTGACAGTAATCCGTTCGCAAAGGGCTTCCGCGACTCGTCGCGTCTCACTGAATTCGAAAGATTCTATATCACGGGAGAACACGACCGAATGTCAGTCATCTCTGACGAGGCGCGCTTCAATGCAGTCAATCATAGGGAGACGATGGAGTCGATGCTAGCCGAGCAGCACTACCTGCGGTCGCCACTGCGGCCCTTCGACTTGGACCAGCACAACAACAACTTGACTTTGGAGGAGAAGGCGATCCTGGCGGCCCGGTCGCAGCTGTTCTTGCGCGCGGCGTATCCGCTGTACGGGGTACCGGCCGCGGCGCTTTGGGGACAGTGGGCCTGTCTGGCGCCGCAACTATTGGCGCAGCAACAGCTAGCAGCATCAGGGTCGGGACTGCAAATGGCGCGACCGGCGTACCCTGCACCGCATCGCTACTCTCCGTACCCAGCACGACGTTCCCCCCCCGCCTCTTCGCCCGAGTCCTCACCGCACGCCGCGCATCCCCCGCACAGCCCTACTTAG

Protein

MGCSEGDKLWTPNGGLGSEGTNLMLLQGEGRDRQGHAMEEDCSARPCATDFSIAAIMARDRQERRERRRHRDPREDTLTPLEKFVDATASASGSPSPPLVEFERDSPVDVSSTSEAGSASGTAGGSRAVSPPPRNPQLVERWSSEEMRHIQCHLETKELWDKFNELGTEMIITKTGRRMFPTVRVSFAGCRAEARYGVLLDVVPVDGKRYRYAYHRSSWLVAGKADPPAPARLYPHPDSPFSGDQLRKQVVSFEKVKLTNNEMDKNGQLVLNSMHKYQPRIHLVLRREGAVNAPITDLEQEEFKTFIFPECVFTAVTAYQNQLITKLKIDSNPFAKGFRDSSRLTEFERFYITGEHDRMSVISDEARFNAVNHRETMESMLAEQHYLRSPLRPFDLDQHNNNLTLEEKAILAARSQLFLRAAYPLYGVPAAALWGQWACLAPQLLAQQQLAASGSGLQMARPAYPAPHRYSPYPARRSPPASSPESSPHAAHPPHSPT

Uniprot

A0A2W1BWT4 A0A2A4JJC0 A0A212ESX7 A0A1Y1KNH2 A0A1Y1KMV4 D6WL45 + More
A0A1B6CDH3 A0A1B6M058 A0A1B6LHJ6 A0A1B6LVD6 T1JNG0

Pubmed

28756777 22118469 28004739 18362917 19820115

EMBL

KZ149933 PZC77270.1 NWSH01001190 PCG72195.1 AGBW02012723 OWR44554.1 + More
GEZM01083820 JAV60996.1 GEZM01083821 JAV60995.1 KQ971343 EFA04671.2 GEDC01025817 JAS11481.1 GEBQ01010660 JAT29317.1 GEBQ01016859 JAT23118.1 GEBQ01012358 JAT27619.1 JH431841

Proteomes

UP000218220 UP000007151 UP000007266

Pfam

PF00907 T-box

Interpro

IPR036960   T-box_sf        + More
IPR018186   TF_T-box_CS
IPR001699   TF_T-box
IPR008967   p53-like_TF_DNA-bd
IPR002070   TF_Brachyury

SUPFAM

SSF49417 SSF49417

Gene 3D

2.60.40.820

CDD

cd00182 TBOX

ProteinModelPortal

A0A2W1BWT4 A0A2A4JJC0 A0A212ESX7 A0A1Y1KNH2 A0A1Y1KMV4 D6WL45 + More
A0A1B6CDH3 A0A1B6M058 A0A1B6LHJ6 A0A1B6LVD6 T1JNG0

PDB

4A04 E-value=2.16675e-63, Score=616

KEGG

101738862 K10185 T-box protein 20 | (RefSeq) T-box transcription factor TBX20-like

GO

GO:0005634 GO:0003677 GO:0003700 GO:0006355 GO:0009072 GO:0003824 GO:0006520 GO:0008483 GO:0006418 GO:0016507 GO:0048384

PANTHER

PTHR11267

Subcellular location

Nucleus

Length:

498

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.19512

Exp number, first 60 AAs:

0.00038

Total prob of N-in:

0.00250

outside

1 - 498

Pi

228.724012

Theta

175.827793

Tajima's D

1.094435

CLR

0.670806

CSRT

0.688715564221789

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree