SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02105
Pre Gene Modal
BGIBMGA002994
Annotation
PREDICTED:_T-box_transcription_factor_TBX20-like_[Amyelois_transitella]
Transcription factor
Location in the cell
Nuclear   Reliability : 3.2
 

Sequence

CDS
ATGGGATGTTCGGAAGGTGACAAGTTGTGGACTCCGAACGGCGGACTGGGCTCAGAGGGGACTAACTTGATGCTGCTACAAGGCGAGGGTCGAGATCGGCAGGGGCACGCCATGGAGGAAGACTGCTCCGCGCGCCCCTGTGCTACAGACTTCTCCATCGCAGCCATAATGGCAAGAGATAGACAAGAGCGAAGAGAGAGGCGGAGACATAGAGATCCCCGAGAAGATACTCTTACTCCACTAGAGAAATTCGTAGACGCGACAGCGTCTGCTTCAGGATCGCCGTCACCGCCTCTGGTTGAATTCGAGAGAGACTCTCCGGTGGACGTTTCCTCAACTTCCGAGGCCGGGTCTGCCAGTGGTACCGCTGGCGGATCGAGAGCCGTCTCACCCCCTCCTCGTAATCCGCAGCTGGTTGAGCGATGGTCCAGCGAGGAGATGCGCCACATACAATGCCACCTCGAAACTAAGGAACTTTGGGACAAATTCAACGAACTCGGAACTGAAATGATAATCACGAAGACTGGAAGGCGAATGTTTCCGACGGTGCGCGTGTCGTTCGCTGGCTGCCGGGCGGAAGCGCGGTACGGCGTGCTGCTGGACGTGGTGCCGGTGGACGGCAAGCGCTACCGGTACGCGTACCACCGCTCCTCGTGGCTCGTCGCCGGCAAGGCGGACCCGCCAGCACCCGCGCGGCTCTATCCGCATCCCGACTCGCCCTTCTCCGGCGACCAGCTCCGCAAGCAGGTCGTCTCTTTCGAGAAGGTCAAACTCACCAACAACGAAATGGACAAAAACGGACAGCTAGTACTAAATTCGATGCACAAATATCAGCCTCGGATTCACTTGGTGCTCCGACGAGAGGGCGCCGTCAACGCGCCCATCACCGATCTCGAACAAGAAGAATTCAAGACCTTCATATTTCCCGAATGCGTCTTCACGGCTGTCACAGCGTACCAGAACCAGCTCATCACGAAATTGAAAATTGACAGTAATCCGTTCGCAAAGGGCTTCCGCGACTCGTCGCGTCTCACTGAATTCGAAAGATTCTATATCACGGGAGAACACGACCGAATGTCAGTCATCTCTGACGAGGCGCGCTTCAATGCAGTCAATCATAGGGAGACGATGGAGTCGATGCTAGCCGAGCAGCACTACCTGCGGTCGCCACTGCGGCCCTTCGACTTGGACCAGCACAACAACAACTTGACTTTGGAGGAGAAGGCGATCCTGGCGGCCCGGTCGCAGCTGTTCTTGCGCGCGGCGTATCCGCTGTACGGGGTACCGGCCGCGGCGCTTTGGGGACAGTGGGCCTGTCTGGCGCCGCAACTATTGGCGCAGCAACAGCTAGCAGCATCAGGGTCGGGACTGCAAATGGCGCGACCGGCGTACCCTGCACCGCATCGCTACTCTCCGTACCCAGCACGACGTTCCCCCCCCGCCTCTTCGCCCGAGTCCTCACCGCACGCCGCGCATCCCCCGCACAGCCCTACTTAG
Protein
MGCSEGDKLWTPNGGLGSEGTNLMLLQGEGRDRQGHAMEEDCSARPCATDFSIAAIMARDRQERRERRRHRDPREDTLTPLEKFVDATASASGSPSPPLVEFERDSPVDVSSTSEAGSASGTAGGSRAVSPPPRNPQLVERWSSEEMRHIQCHLETKELWDKFNELGTEMIITKTGRRMFPTVRVSFAGCRAEARYGVLLDVVPVDGKRYRYAYHRSSWLVAGKADPPAPARLYPHPDSPFSGDQLRKQVVSFEKVKLTNNEMDKNGQLVLNSMHKYQPRIHLVLRREGAVNAPITDLEQEEFKTFIFPECVFTAVTAYQNQLITKLKIDSNPFAKGFRDSSRLTEFERFYITGEHDRMSVISDEARFNAVNHRETMESMLAEQHYLRSPLRPFDLDQHNNNLTLEEKAILAARSQLFLRAAYPLYGVPAAALWGQWACLAPQLLAQQQLAASGSGLQMARPAYPAPHRYSPYPARRSPPASSPESSPHAAHPPHSPT

Summary

Pfam
PF00907   T-box
Interpro
IPR036960   T-box_sf        + More
IPR018186   TF_T-box_CS       
IPR001699   TF_T-box       
IPR008967   p53-like_TF_DNA-bd       
IPR002070   TF_Brachyury       
SUPFAM
SSF49417   SSF49417       
Gene 3D
PDB
4A04     E-value=2.16675e-63,     Score=616

Ontologies

Topology

Subcellular location
Nucleus  
Length:
498
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.19512
Exp number, first 60 AAs:
0.00038
Total prob of N-in:
0.00250
outside
1  -  498
 
 

Population Genetic Test Statistics

Pi
228.724012
Theta
175.827793
Tajima's D
1.094435
CLR
0.670806
CSRT
0.688715564221789
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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