Gene

KWMTBOMO02103  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002990

Annotation

PREDICTED:_sorting_nexin-20_[Papilio_xuthus]

Location

Bomo_Chr4(+):12046418-12050656      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.301

CDS

ATGTTGCGATTCAAAATTATTTCGTCACGGACAGTGGATAGTTCTGAGACCGAGAAGAAATTTGTAGCCTACATGGTACAGGTGAATCGAGAAACGGATTTGGCTGATCAAGATCCTGCGAACGTTGAAAGAAGATACACCCATTTTTTGGATCTATATAATGGTTTAAAAAAGGAACAACCGACGCTGCTTAATAATTTATCATTTCCGAGAAAGACTGTAGTAGGCAACTTTGATGCCAATTTAATATCTACTCGTTGTGCAGCATTTGAATCACTGTTGGATTTAATGAGCAATGACTCAAGACTCCGAGATTGTCCGGCAGCAATCACATTCTTCCAGGATGTGGAATTGAGTGAAGCCAAGAGACTAATTAATGAGGGTAAATTTGACCAGGCACTGTCCATACTAGAAACAAGTTTCAAATTATTAAATAAGGTTTATACAGACAGATCAAGGGTGGTGCTTTGTGCTCTTTGTCGGATTGTGGCATGCGCTGGAGCTAGTGATGGTACATTAGCAGGGCCAGTGGAACGGTGGGCACAGCTTGCATTACGAAGATACGAAGCAGTCAGTGATTCTGATTTACTCCTGATATACATACCATTGCTTCACACTTGCATAAACATTTGGGAAACACTTGGTAGAGATAAATCGAAGTTAGTTGAAGAACTAAATGACCTTCGCAAACGAGGAATGAAGGTGGATTCCGTGCCCACATTAATGGAAGCAGTCGACACTTTAGACACCATGTAA

Protein

MLRFKIISSRTVDSSETEKKFVAYMVQVNRETDLADQDPANVERRYTHFLDLYNGLKKEQPTLLNNLSFPRKTVVGNFDANLISTRCAAFESLLDLMSNDSRLRDCPAAITFFQDVELSEAKRLINEGKFDQALSILETSFKLLNKVYTDRSRVVLCALCRIVACAGASDGTLAGPVERWAQLALRRYEAVSDSDLLLIYIPLLHTCINIWETLGRDKSKLVEELNDLRKRGMKVDSVPTLMEAVDTLDTM

Uniprot

H9J0F3   A0A2H1WJB5   A0A2A4IUM4   A0A2W1BQB4   A0A1E1VZ09   A0A194QN98   + More
A0A194Q5L3   A0A0L7LW05   A0A212ESV4   A0A067R163   A0A2J7QMA9   A0A2J7QMA6   A0A2J7QMD1   D6WL42   A0A1W4XMK9   A0A2P8YFM8   A0A1B0CAW2   A0A1I8P6T7   A0A1I8P6Z4   A0A0K8VWK8   A0A034WL02   A0A0K8V7X5   A0A336M4Q0   A0A182GGX2   A0A1I8NF49   A0A1I8NF48   A0A023EPM1   A0A1L8DW93   W8BZQ4   W8CA01   Q16S18   W8C5J4   A0A1S4FR48   A0A1B6CRH7   A0A182SRH4   A0A1W4V6N4   U5EV36   A0A1B6D3M3   B4LUU7   A0A0A1XFW1   A0A0A1WLG7   A0A1L8DWA0   A0A1B0FQX7   Q29KW6   B4GSP9   A0A0L0CFZ0   A0A3B0K749   A0A0Q9X808   B4KLD5   A0A1Y1MZU8   A0A1A9V6V8   A0A0Q9XI80   B4NWU2   A0A084VND1   B4Q8K0   A0A0J9QV94   B3N1A5   Q9VQG1   M9PBU4   A0A1A9X608   A0A1B0BWC7   B4I2P8   B3NA55   B4N0H2   A0A069DRI2   B4JQQ2   A0A1J1ICW4   A0A023EYC3   A0A182KBK6   E0VVL8   A0A182MDX9   A0A0V0GCQ4   A0A182PDE0   A0A182QF40   A0A182NEW3   A0A182YFF3   A0A182URL6   A0A1S4H0W8   A0NGB2   A0A2C9GMK5   A0A182WGY5   A0A182X2X0   A0A182I4Y3   A0A182R9Q8   T1IC44   A0A182TIF2   A0A182J311   A0A1B6I1J4   A0A1B6ILK7   A0A2R7VY22   A0A1B6EVN4   A0A1Q3FDE3   A0A1Q3FDI2   A0A224XIZ6   A0A1Q3FDH0   J3JU69   A0A2M4AUP1   A0A2M4AUS6   A0A2M4AU35  

Pubmed

19121390    28756777    26354079    26227816    22118469    24845553    + More
18362917    19820115    29403074    25348373    26483478    25315136    24945155    24495485    17510324    17994087    25830018    15632085    26108605    28004739    17550304    24438588    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    26334808    25474469    20566863    25244985    12364791    22516182   

EMBL

BABH01010478    ODYU01009031    SOQ53138.1    NWSH01006437    PCG63431.1    KZ149933    + More
PZC77272.1    GDQN01011081    JAT79973.1    KQ461196    KPJ06450.1    KQ459583    KPI98685.1    JTDY01000025    KOB79351.1    AGBW02012723    OWR44557.1    KK852781    KDR16645.1    NEVH01013211    PNF29730.1    PNF29731.1    PNF29732.1    KQ971343    EFA03513.1    PYGN01000636    PSN43041.1    AJWK01004336    GDHF01032413    GDHF01021340    GDHF01017960    GDHF01009053    GDHF01008540    GDHF01005871    JAI19901.1    JAI30974.1    JAI34354.1    JAI43261.1    JAI43774.1    JAI46443.1    GAKP01004132    JAC54820.1    GDHF01017343    JAI34971.1    UFQT01000439    SSX24331.1    JXUM01062620    JXUM01062621    KQ562208    KXJ76408.1    GAPW01002648    JAC10950.1    GFDF01003386    JAV10698.1    GAMC01001703    JAC04853.1    GAMC01001704    JAC04852.1    CH477689    EAT37250.1    GAMC01001702    JAC04854.1    GEDC01021280    JAS16018.1    GANO01003586    JAB56285.1    GEDC01016999    JAS20299.1    CH940649    EDW64274.2    GBXI01004461    JAD09831.1    GBXI01014952    JAC99339.1    GFDF01003385    JAV10699.1    CCAG010010711    CH379061    EAL33058.3    CH479189    EDW25408.1    JRES01000438    KNC31165.1    OUUW01000006    SPP81849.1    CH933807    KRG03433.1    EDW12816.1    GEZM01016696    JAV91184.1    KRG03432.1    CM000157    EDW87434.1    ATLV01014737    KE524984    KFB39475.1    CM000361    EDX03517.1    CM002910    KMY87729.1    CH902652    EDV33626.2    AE014134    AY061149    AAF51213.2    AAL28697.1    AGB92499.1    JXJN01021707    CH480820    EDW54043.1    CH954177    EDV57518.1    CH963920    EDW77585.2    GBGD01002637    JAC86252.1    CH916372    EDV99232.1    CVRI01000047    CRK97396.1    GBBI01004625    JAC14087.1    DS235812    EEB17424.1    AXCM01011510    GECL01000225    JAP05899.1    AXCN02000839    AAAB01008984    EAU75941.2    APCN01003737    ACPB03011330    GECU01026923    GECU01018131    GECU01017011    GECU01008896    JAS80783.1    JAS89575.1    JAS90695.1    JAS98810.1    GECU01019903    GECU01018359    JAS87803.1    JAS89347.1    KK854163    PTY12397.1    GECZ01027685    JAS42084.1    GFDL01009449    JAV25596.1    GFDL01009425    JAV25620.1    GFTR01003961    JAW12465.1    GFDL01009448    JAV25597.1    BT126782    AEE61744.1    GGFK01011173    MBW44494.1    GGFK01011027    MBW44348.1    GGFK01010969    MBW44290.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000037510    UP000007151    + More
UP000027135    UP000235965    UP000007266    UP000192223    UP000245037    UP000092461    UP000095300    UP000069940    UP000249989    UP000095301    UP000008820    UP000075901    UP000192221    UP000008792    UP000092444    UP000001819    UP000008744    UP000037069    UP000268350    UP000009192    UP000078200    UP000002282    UP000030765    UP000000304    UP000007801    UP000000803    UP000092443    UP000092460    UP000001292    UP000008711    UP000007798    UP000001070    UP000183832    UP000075881    UP000009046    UP000075883    UP000075885    UP000075886    UP000075884    UP000076408    UP000075903    UP000007062    UP000075840    UP000075920    UP000076407    UP000075900    UP000015103    UP000075902    UP000075880   

PRIDE

H9J0F3    Q9VQG1    M9PBU4   

Pfam

PF00787   PX

Interpro

IPR001683   Phox        + More
IPR036871   PX_dom_sf       
IPR039937   SNX20/SNX21       
IPR011990   TPR-like_helical_dom_sf       
IPR009080   tRNAsynth_Ia_anticodon-bd       

SUPFAM

SSF64268   SSF64268        + More
SSF47323   SSF47323       

Gene 3D

3.30.1520.10     1.25.40.10    

ProteinModelPortal

H9J0F3   A0A2H1WJB5   A0A2A4IUM4   A0A2W1BQB4   A0A1E1VZ09   A0A194QN98   + More
A0A194Q5L3   A0A0L7LW05   A0A212ESV4   A0A067R163   A0A2J7QMA9   A0A2J7QMA6   A0A2J7QMD1   D6WL42   A0A1W4XMK9   A0A2P8YFM8   A0A1B0CAW2   A0A1I8P6T7   A0A1I8P6Z4   A0A0K8VWK8   A0A034WL02   A0A0K8V7X5   A0A336M4Q0   A0A182GGX2   A0A1I8NF49   A0A1I8NF48   A0A023EPM1   A0A1L8DW93   W8BZQ4   W8CA01   Q16S18   W8C5J4   A0A1S4FR48   A0A1B6CRH7   A0A182SRH4   A0A1W4V6N4   U5EV36   A0A1B6D3M3   B4LUU7   A0A0A1XFW1   A0A0A1WLG7   A0A1L8DWA0   A0A1B0FQX7   Q29KW6   B4GSP9   A0A0L0CFZ0   A0A3B0K749   A0A0Q9X808   B4KLD5   A0A1Y1MZU8   A0A1A9V6V8   A0A0Q9XI80   B4NWU2   A0A084VND1   B4Q8K0   A0A0J9QV94   B3N1A5   Q9VQG1   M9PBU4   A0A1A9X608   A0A1B0BWC7   B4I2P8   B3NA55   B4N0H2   A0A069DRI2   B4JQQ2   A0A1J1ICW4   A0A023EYC3   A0A182KBK6   E0VVL8   A0A182MDX9   A0A0V0GCQ4   A0A182PDE0   A0A182QF40   A0A182NEW3   A0A182YFF3   A0A182URL6   A0A1S4H0W8   A0NGB2   A0A2C9GMK5   A0A182WGY5   A0A182X2X0   A0A182I4Y3   A0A182R9Q8   T1IC44   A0A182TIF2   A0A182J311   A0A1B6I1J4   A0A1B6ILK7   A0A2R7VY22   A0A1B6EVN4   A0A1Q3FDE3   A0A1Q3FDI2   A0A224XIZ6   A0A1Q3FDH0   J3JU69   A0A2M4AUP1   A0A2M4AUS6   A0A2M4AU35  

PDB

1XTE     E-value=0.000532474,     Score=100

KEGG

101739143    no KO assigned | (RefSeq) sorting nexin-20

GO

GO:0035091   GO:0015031   GO:0004812   GO:0005524   GO:0006418   GO:0048038   GO:0051287   GO:0009072   GO:0003824   GO:0006520   GO:0008483   GO:0016507   GO:0048384  

PANTHER

PTHR20939  

Length:

251

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.52651

Exp number, first 60 AAs:

0

Total prob of N-in:

0.07837

outside

1  -  251

 

 

Pi

280.578298

Theta

219.132183

Tajima's D

0.959454

CLR

0.122484

CSRT

0.656417179141043

Interpretation

Uncertain