SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02098
Annotation
PREDICTED:_uncharacterized_protein_LOC105842588_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.819
 

Sequence

CDS
ATGGACGATGACGACGGGGGTGAGGGCTTCAGCTCCGCCCCTGTGTCCGCTCCCATAATAATGGGAAAAAGAAGAATGAAGTCATCTGAATACGACGAAAGCCGCAAAATAAAAATGACTTTCATTAAAAATAAGCGCGGTCTTTTTAAAGACCACCATGCTCTTTACGAAGACCTCACAAAAAAAGAATACCCAGTGCTTCTTCAATCAAGCATCTCACAACCAAATAACAGAGTCCCAATGGACCTGTTAAGAATAAACAAAGCATTAAAAAATATTCAAGGGGTCCAGTATGTCAAAGCTGCTGGGAACTTTTTTGCTAAAATTTACTTTGGTTGTGCTCGGGATGCCAACGCTTTTTTATTAAATGTAAGTTTTATGGAGTTAAACAATTGGACAGCAAAAATACCTTACGATAGCATTGAGAGTCAAGGAATTATTCGAGCTCCTGTGGAATTGAACGAAGAATCTCTTTTAGTAAATTTAAAAGCTTCATGCACAATACTCGGAGTAAAAAGATTTTTCAAAAAACAAGAGAATGGAAGTGACAAGCCACTGCAAACTGTGCTGGTTACATTTTTGGCGTCTAGCCATCCTGATCATGTCACATACGAGCATATTTGGATGCCTGTTTCAGATTATATTAGACCTGTGTTACAGTGCTTCAAATGCTACAAATTCGGACATGGAAGTGGTGCCTGTAAAGCCACTCAAGTTTGCTCTATTTGTTCAGGCAATCATTTTTACAGGGAGTGCAGCACTCCCAACATCTTCAAGTGCTCCAACTGCAGTGGACCACATTCTGCAGTTTCTTACTCTTGCTCAGTAAAAGCAGCCAAGGTTGCTGAAGTTAAAAATAAGATCATCGGCAAGCAAACATCATATGCAGCCATACTAAAGAATCCTGTTATTAAGAACAACGTGACCTCTTCTGACATACCTATATCTGCGAAGACCCCTCAAGGTAGGGCTTTAATTTCAGACATTATCAACTCAGAAATTGTCGTCAGAACCATTACAAAAACTTTAATAGAATTGTTAAAGAAAAAGGATTCTAAATCCCCTTCTGGACCTATATCTACTCAATTAATTAAAGAAATGCTAGTAACAAATTTTACATCATAA
Protein
MDDDDGGEGFSSAPVSAPIIMGKRRMKSSEYDESRKIKMTFIKNKRGLFKDHHALYEDLTKKEYPVLLQSSISQPNNRVPMDLLRINKALKNIQGVQYVKAAGNFFAKIYFGCARDANAFLLNVSFMELNNWTAKIPYDSIESQGIIRAPVELNEESLLVNLKASCTILGVKRFFKKQENGSDKPLQTVLVTFLASSHPDHVTYEHIWMPVSDYIRPVLQCFKCYKFGHGSGACKATQVCSICSGNHFYRECSTPNIFKCSNCSGPHSAVSYSCSVKAAKVAEVKNKIIGKQTSYAAILKNPVIKNNVTSSDIPISAKTPQGRALISDIINSEIVVRTITKTLIELLKKKDSKSPSGPISTQLIKEMLVTNFTS

Summary

Pfam
PF07776   zf-AD
Interpro
IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf       
IPR012934   Znf_AD       
SUPFAM
SSF57756   SSF57756       

Ontologies

Topology

Length:
374
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00841999999999998
Exp number, first 60 AAs:
0.00079
Total prob of N-in:
0.00336
outside
1  -  374
 
 

Population Genetic Test Statistics

Pi
498.304631
Theta
225.371815
Tajima's D
3.919075
CLR
0.621122
CSRT
0.9982000899955
Interpretation
Possibly Balancing Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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