Gene

KWMTBOMO02092

Pre Gene Modal

BGIBMGA002986

Annotation

tyrosine_aminotransferase_[Papilio_xuthus]

Location

Bomo_Chr4(+):11896088-11899588      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.518 PlasmaMembrane   Reliability : 1.232

CDS

ATGTCGCGAAGGTCACGGAGAAATCCTGTATGGGAGGTGCGAGCTTCAACGTTAGCTCGCAACACACGTAATTTAATACGAGAAATTATAGAAAATCTTGATGTCCAGCCCAACCCTGACAAGCAGCTGATCGCACTTTCTGTCGGTGATCCGACGACTTTTGGAAATTTGAACCCTCCAGATCAAGTTTTGCAAGCTGTTCGCGAAAGTATTGAGTGGCACACGAGCAGGGGGTACGGCCCTGCTAAAGGTCACATAGAAGCCAGGCAGGCGGTTGCTGAATACAGCGCTCATCAGGGGCACGTAACCGCTGAAGATGTAGTGTTGTGTAGTGGTTGTTCACATGCCATAGAACTGGCCGTTTCAGTTTTAGCAGATTCCGGGCAAAACGTTTTGGTTCCTCGACCAGGGTTTATGATCTACAAGACGTTGGCAGAAGGTCTAGGAATAGATATCAAATATTACAATTTACTGTCTGATCAACAATGGAGGGTCGATTTAGATGATTTGGAAAATCAAATAGATGATGACACAGCCGCTATAATTGTGATTAACCCATCGAATCCTTGTGGATCCGTGTACAGCAGGGAGCATTTACAAGATATACTAGAAGTAGCATCAAGGAACCGATTACCGATAATAGCTGACGAAATATACGAGCATTTCGTTTTCTCTGATCATGAGTTTATCTCTATGTCGGCACTGTCTAAAGATGTTCCTATACTAACGTGCAGCGGCCTTACAAAGAGATTTTTAGTACCCGGTTGGCGCATGGGTTGGATTGTCATACATGATAGGAACGACATATTCGGAAAGGAAGTGAGGAAAGGACTAAACAATTTGGCAACACGAATTCTAGGTCCAAGTACTTTGATTCAACGAGCTTTACCGACGATATTGAAAAATACACCTCAAAGTTTTTTCGATGAAGTCGTATTATTTATAGAGAACCAAGCAAAATTGGCTTACAAGGAATTAGTACTCGCGCCAGGATTACGCCCAATAATGCCTCAAGGTGCCATGTACATGATGATCGAAATAAAAACAAACAAGTTTCCGGAATTCAAAAACGAACTTCAATTTGTGGAGAGGTTGATGTCCGAACAATCGGTATTCTGTTTACCTGGACAGTGCTTTGAATTTCCCAACTACATGAGGATCGTCTTGACGGTACCAGAAGAGATTTTACGAGAAGCATGTCGTAGGATAATAATATTTTGTCAAGAGCATGTAGTTTCAAGAGAAAAAATTCTGGAAATTGATGAAAATGTCGTTGTTTCGAGCGAAGCTGAGATAATACGAAAGAAAAGCTTAACGACAGTGACCTAA

Protein

MSRRSRRNPVWEVRASTLARNTRNLIREIIENLDVQPNPDKQLIALSVGDPTTFGNLNPPDQVLQAVRESIEWHTSRGYGPAKGHIEARQAVAEYSAHQGHVTAEDVVLCSGCSHAIELAVSVLADSGQNVLVPRPGFMIYKTLAEGLGIDIKYYNLLSDQQWRVDLDDLENQIDDDTAAIIVINPSNPCGSVYSREHLQDILEVASRNRLPIIADEIYEHFVFSDHEFISMSALSKDVPILTCSGLTKRFLVPGWRMGWIVIHDRNDIFGKEVRKGLNNLATRILGPSTLIQRALPTILKNTPQSFFDEVVLFIENQAKLAYKELVLAPGLRPIMPQGAMYMMIEIKTNKFPEFKNELQFVERLMSEQSVFCLPGQCFEFPNYMRIVLTVPEEILREACRRIIIFCQEHVVSREKILEIDENVVVSSEAEIIRKKSLTTVT

Cofactor

pyridoxal 5'-phosphate

Uniprot

H9J0E9   A0A2W1BSH1   I4DJH1   A0A2A4IWD9   A0A194PZD4   A0A2H1W1I5   + More
A0A194QM68   A0A212EN53   A0A2W1BQC3   A0A2H1W0T3   A0A0L7LV64   A0A2A4IVW8   A0A1S4FKY4   A0A023ESI1   Q16X98   A0A1Q3G3K7   A0A1B6J472   A0A1B6L8L1   A0A182MZJ8   A0A182Q5B3   A0A182J8P0   A0A182MM05   A0A084VQ68   A0A1B6DT86   A0A182W564   A0A182V7K6   A0A182LM48   A0A182XBT4   Q7QF69   A0A182HMX0   A0A182RM44   K7IPX4   A0A182TWF6   A0A182KC84   W5JMI5   E2APL5   A0A087TMT0   A0A182FK82   A0A182YK30   A0A0K8R4M3   A0A0C9PKX5   A0A1L8E2G3   A0A088A3X1   A0A067RAG0   A0A3L8DAF1   A0A224XK34   E0VY60   A0A195DSR0   A0A158NRP5   A0A2U9K4C0   A0A0A9WAY0   A0A0P5XJ93   A0A0P5CL77   A0A0P6AG43   A0A0P6IT54   F4W7A8   E9FYX4   L7LY86   A0A162CP91   A0A131YQB8   W8AWH6   A0A1D2MLB4   A0A0L0C3I2   A0A226F6P6   A0A0N7ZB26   A0A034VBF3   A0A0K8UVL4   B3MVS7   A0A0P4VRR3   R4G400   A0A0B7BAJ5   A0A0K8VK99   A0A0B7BD21   A0A232F1D9   A0A087T8N5   A0A182GV64   B4Q2S3   B0W9G3   A0A3B3RMW6   A0A1A9XWY6   A0A1A9VRY0   A0A2R5L8X0   A0A1B0GFJ1   A0A1A9ZIH0   C3ZBR3   B4H054   Q9VY42   Q29H80   R7UIX6   A0A1W4VGS0   A0A195CJA8   A0A0F8CYE5   A0A154PEU6   B4IGC3   A0A2I4DAT0   A0A2J7R2F6   A0A0A1XQB5   A0A3P8S760   A0A026VZ40   A0A151X8R6  

Pubmed

19121390    28756777    22651552    26354079    22118469    26227816    + More
24945155    17510324    24438588    20966253    12364791    14747013    17210077    20075255    20920257    23761445    20798317    25244985    24845553    30249741    20566863    21347285    25401762    21719571    21292972    25576852    26830274    24495485    27289101    26108605    25348373    17994087    27129103    27476595    28648823    26483478    17550304    29240929    18563158    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    23254933    25835551    25830018    24508170   

EMBL

BABH01010487    KZ149933    PZC77281.1    AK401439    BAM18061.1    NWSH01006457    + More
PCG63423.1    KQ459583    KPI98697.1    ODYU01005642    SOQ46702.1    KQ461196    KPJ06459.1    AGBW02013744    OWR42887.1    PZC77282.1    SOQ46701.1    JTDY01000025    KOB79352.1    PCG63424.1    GAPW01001375    JAC12223.1    CH477545    EAT39220.1    GFDL01000699    JAV34346.1    GECU01013734    JAS93972.1    GEBQ01019930    JAT20047.1    AXCN02001284    AXCM01002316    ATLV01015141    ATLV01015142    KE525003    KFB40112.1    GEDC01008414    JAS28884.1    AAAB01008846    EAA06243.4    APCN01004923    ADMH02000984    ETN64518.1    GL441551    EFN64629.1    KK115940    KFM66419.1    GADI01007802    JAA66006.1    GBYB01001653    JAG71420.1    GFDF01001248    JAV12836.1    KK852820    KDR15584.1    QOIP01000011    RLU17103.1    GFTR01006248    JAW10178.1    DS235843    EEB18316.1    KQ980487    KYN15883.1    ADTU01024142    ADTU01024143    MF446848    AWS20466.1    GBHO01045197    GBHO01045195    GBHO01039961    GBHO01025314    GBHO01016978    JAF98406.1    JAF98408.1    JAG03643.1    JAG18290.1    JAG26626.1    GDIP01071253    JAM32462.1    GDIP01174035    JAJ49367.1    GDIP01031302    JAM72413.1    GDIQ01005544    JAN89193.1    GL887844    EGI69781.1    GL732527    EFX87697.1    GACK01008492    JAA56542.1    LRGB01000898    KZS15316.1    GEDV01007420    JAP81137.1    GAMC01013240    JAB93315.1    LJIJ01000908    ODM93810.1    JRES01000948    KNC26883.1    LNIX01000001    OXA65128.1    GDRN01090433    JAI60472.1    GAKP01019847    JAC39105.1    GDHF01021688    JAI30626.1    CH902625    EDV35072.1    GDKW01002009    JAI54586.1    ACPB03007690    KX572141    GAHY01001775    ANZ03345.1    JAA75735.1    HACG01043163    CEK90028.1    GDHF01013015    JAI39299.1    HACG01043165    CEK90030.1    NNAY01001368    OXU24218.1    KK113970    KFM61474.1    JXUM01090417    KQ563838    KXJ73193.1    CM000162    EDX01667.1    DS231864    EDS40188.1    GGLE01001825    MBY05951.1    CCAG010001798    GG666603    EEN50300.1    CH479200    EDW29649.1    AE014298    AY069305    AAF48363.1    AAL39450.1    CH379064    EAL31878.1    AMQN01008542    KB303371    ELU03237.1    KQ977649    KYN00803.1    KQ041127    KKF30339.1    KQ434889    KZC10373.1    CH480835    EDW48857.1    NEVH01007831    PNF35002.1    GBXI01001081    JAD13211.1    KK107575    EZA48726.1    KQ982409    KYQ56763.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000037510    + More
UP000008820    UP000075884    UP000075886    UP000075880    UP000075883    UP000030765    UP000075920    UP000075903    UP000075882    UP000076407    UP000007062    UP000075840    UP000075900    UP000002358    UP000075902    UP000075881    UP000000673    UP000000311    UP000054359    UP000069272    UP000076408    UP000005203    UP000027135    UP000279307    UP000009046    UP000078492    UP000005205    UP000007755    UP000000305    UP000076858    UP000094527    UP000037069    UP000198287    UP000007801    UP000015103    UP000215335    UP000069940    UP000249989    UP000002282    UP000002320    UP000261540    UP000092443    UP000078200    UP000092444    UP000092445    UP000001554    UP000008744    UP000000803    UP000001819    UP000014760    UP000192221    UP000078542    UP000076502    UP000001292    UP000192220    UP000235965    UP000265080    UP000053097    UP000075809   

PRIDE

H9J0E9    L7LY86    Q9VY42   

Pfam

PF00155   Aminotran_1_2        + More
PF01391   Collagen
PF01413   C4
PF07706   TAT_ubiq

Interpro

IPR015421   PyrdxlP-dep_Trfase_major        + More
IPR015424   PyrdxlP-dep_Trfase       
IPR004839   Aminotransferase_I/II       
IPR005957   Tyrosine_aminoTrfase       
IPR005958   TyrNic_aminoTrfase       
IPR015422   PyrdxlP-dep_Trfase_dom1       
IPR004838   NHTrfase_class1_PyrdxlP-BS       
IPR011011   Znf_FYVE_PHD       
IPR001965   Znf_PHD       
IPR016187   CTDL_fold       
IPR008160   Collagen       
IPR036954   Collagen_IV_NC_sf       
IPR001442   Collagen_IV_NC       
IPR011715   Tyr_aminoTrfase_ubiquitination       

SUPFAM

SSF53383   SSF53383        + More
SSF57903   SSF57903       
SSF56436   SSF56436       

Gene 3D

3.40.640.10     3.90.1150.10     2.170.240.10    

ProteinModelPortal

H9J0E9   A0A2W1BSH1   I4DJH1   A0A2A4IWD9   A0A194PZD4   A0A2H1W1I5   + More
A0A194QM68   A0A212EN53   A0A2W1BQC3   A0A2H1W0T3   A0A0L7LV64   A0A2A4IVW8   A0A1S4FKY4   A0A023ESI1   Q16X98   A0A1Q3G3K7   A0A1B6J472   A0A1B6L8L1   A0A182MZJ8   A0A182Q5B3   A0A182J8P0   A0A182MM05   A0A084VQ68   A0A1B6DT86   A0A182W564   A0A182V7K6   A0A182LM48   A0A182XBT4   Q7QF69   A0A182HMX0   A0A182RM44   K7IPX4   A0A182TWF6   A0A182KC84   W5JMI5   E2APL5   A0A087TMT0   A0A182FK82   A0A182YK30   A0A0K8R4M3   A0A0C9PKX5   A0A1L8E2G3   A0A088A3X1   A0A067RAG0   A0A3L8DAF1   A0A224XK34   E0VY60   A0A195DSR0   A0A158NRP5   A0A2U9K4C0   A0A0A9WAY0   A0A0P5XJ93   A0A0P5CL77   A0A0P6AG43   A0A0P6IT54   F4W7A8   E9FYX4   L7LY86   A0A162CP91   A0A131YQB8   W8AWH6   A0A1D2MLB4   A0A0L0C3I2   A0A226F6P6   A0A0N7ZB26   A0A034VBF3   A0A0K8UVL4   B3MVS7   A0A0P4VRR3   R4G400   A0A0B7BAJ5   A0A0K8VK99   A0A0B7BD21   A0A232F1D9   A0A087T8N5   A0A182GV64   B4Q2S3   B0W9G3   A0A3B3RMW6   A0A1A9XWY6   A0A1A9VRY0   A0A2R5L8X0   A0A1B0GFJ1   A0A1A9ZIH0   C3ZBR3   B4H054   Q9VY42   Q29H80   R7UIX6   A0A1W4VGS0   A0A195CJA8   A0A0F8CYE5   A0A154PEU6   B4IGC3   A0A2I4DAT0   A0A2J7R2F6   A0A0A1XQB5   A0A3P8S760   A0A026VZ40   A0A151X8R6  

PDB

3DYD     E-value=2.8332e-129,     Score=1183

KEGG

101742749    K00815 tyrosine aminotransferase [EC:2.6.1.5] | (RefSeq) tyrosine aminotransferase

PATHWAY

00130    Ubiquinone and other terpenoid-quinone biosynthesis - Bombyx mori (domestic silkworm)
00270    Cysteine and methionine metabolism - Bombyx mori (domestic silkworm)
00350    Tyrosine metabolism - Bombyx mori (domestic silkworm)
00360    Phenylalanine metabolism - Bombyx mori (domestic silkworm)
00400    Phenylalanine, tyrosine and tryptophan biosynthesis - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
01230    Biosynthesis of amino acids - Bombyx mori (domestic silkworm)

GO

GO:0030170   GO:0004838   GO:0009072   GO:0009058   GO:0006520   GO:0008483   GO:0046872   GO:0005201   GO:0005581   GO:0009074   GO:0003824   GO:0006418   GO:0016507   GO:0048384  

Length:

442

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.013

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03351

outside

1  -  442

 

 

Pi

277.613543

Theta

214.269781

Tajima's D

0.71909

CLR

0.029112

CSRT

0.576821158942053

Interpretation

Possibly Positive selection