Gene

KWMTBOMO02090  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002985

Annotation

platelet-activating_factor_acetylhydrolase_alpha_subunit-like_protein_[Bombyx_mori]

Location

Bomo_Chr4(+):11880668-11881994      View in EpiBrowser

Full name

Platelet-activating factor acetylhydrolase IB subunit beta homolog      

Location in the cell

Cytoplasmic   Reliability : 1.933 Nuclear   Reliability : 1.969

CDS

ATGAATCCTTGCTCAATTCCCACACCGCAACAAGATATGGAAGGCGATGGAAGGTGGAATAGCATTCATAACAGATTTCTGTCTGATGCTAAAGGCAAAGATGCTGATGTAATTTTCATAGGTGATTCTATTCTGCAAGCATTAGAACACACTGAGGTATGGAATCAGTGGTTTGCACCCTTACATTGCCTCAATTTTAGTATTCACAAAGATCAAACTCAGAATGTTCTTTGGCGCATAAAAAATGGAGAGTTGGACCATGTTGATCCTAAAGTTATAGTTGTTCATGTTGGAACAAATAATGTAGAAAATACTGCTGAAGAAATATGTGAGGGTATTATAGAAATTATCAAAACAATCAGGGAGAAACATCCTTCGGCCTATATTGTATTACCTAGTCTTTTGCCACGGGGTCAATATCCAAATGGACTAAGAGACAAAAATTCTAAAATTAACAGACTCTTGCATGAAAAAGTCTCCAATATAAATAAAGTTGAAATGGTTCTTATTGATAAAGGCTTTGTTCAAAGTGATGGCACCATAAGTCATCATGACATGCATGATTATCTTTTACCCAGTAATGCTGCCTGTAGGAAAGCATTTGAACCAATTTATGATCTCCTGCAACAGATTTTGAGTGAAGGAGAGCCTGAAAAAGATTTAACACCTTCAGAATAG

Protein

MNPCSIPTPQQDMEGDGRWNSIHNRFLSDAKGKDADVIFIGDSILQALEHTEVWNQWFAPLHCLNFSIHKDQTQNVLWRIKNGELDHVDPKVIVVHVGTNNVENTAEEICEGIIEIIKTIREKHPSAYIVLPSLLPRGQYPNGLRDKNSKINRLLHEKVSNINKVEMVLIDKGFVQSDGTISHHDMHDYLLPSNAACRKAFEPIYDLLQQILSEGEPEKDLTPSE

Subunit

Does not interact with Lis-1.

Similarity

Belongs to the 'GDSL' lipolytic enzyme family. Platelet-activating factor acetylhydrolase IB beta/gamma subunits subfamily.

Keywords

Complete proteome   Reference proteome  

Feature

chain  Platelet-activating factor acetylhydrolase IB subunit beta homolog

Uniprot

H9J0E8   Q1HQ79   A0A2A4JK81   E3T795   A0A2W1BUH0   A0A2H1W0T1   + More
A0A0L7LCA6   S4P6N0   A0A194Q134   A0A212EN36   A0A194QSE2   D6WM38   A0A1Y1LJ29   A0A0T6B602   A0A067QW36   T1H764   A0A0K8V568   A0A0A1XRB6   A0A034WIH7   A0A1L8DM70   W8BID0   B4L7L3   B4MGD8   B4R5I2   B4JJR8   A0A1A9WCB5   B4IKD1   Q9VXP4   B4NDC3   A0A1A9VIJ6   B3NXK1   B4PX68   U4UNR6   A0A1A9XC38   A0A1B0AA04   A0A1B0BGJ7   B4HC99   A0A1W4VGH3   Q29CP5   A0A182VEM1   A0A182INC2   A0A182RIJ7   A0A182XGM4   Q7QI30   A0A182IDK9   A0A182PL01   A0A3B0KDW2   A0A182MR10   A0A182NCB6   A0A182QI32   A0A182GFW5   A0A2M4AYW7   Q16MM3   A0A0L0C9S7   A0A2M3ZIQ9   A0A2M4BYV9   A0A0P9BVV4   A0A1I8NR39   T1PJX9   A0A182F9Z5   A0A1I8MBK3   W5J810   A0A1B0GJC3   A0A2J7Q0Y2   B0WX19   A0A182Y4X2   A0A1Q3F0T0   U5ET95   A0A1B0FLK2   A0A084VIR5   A0A1B6E6I7   A0A2M4CYM3   A0A2M4AZM0   A0A1J1HTW7   A0A0A9XV54   A0A0P4W7Q9   A0A2M4AZN4   A0A336LK13   A0A2S2P562   C4WWV9   A0A1B6GIM2   A0A1B6LPE6   A0A2P2IBV9   A0A023F3X3   T1H8F4   A0A2P4SRN4   J3S9A1   A0A1V4J7S4   T1E4R1   A0A0F7Z4L0   A0A1W7RES4   A0A1W4YH56   A0A069DXJ5   A0A0Q3QN95   A0A226PPB0   G1MW37   R4GL78   B5SNQ5   A0A1D5PMU2   A0A1U7TDJ3  

Pubmed

19121390    22224584    28756777    26227816    23622113    26354079    + More
22118469    18362917    19820115    28004739    24845553    25830018    25348373    24495485    17994087    10737922    10731132    12537572    12537569    17550304    23537049    15632085    23185243    12364791    14747013    17210077    26483478    17510324    26108605    25315136    20920257    23761445    25244985    24438588    25401762    26823975    25474469    23025625    23758969    26358130    26334808    24621616    20838655    15592404   

EMBL

BABH01010489    DQ443173    ABF51262.1    NWSH01001239    PCG72004.1    GU289925    + More
ADO40101.1    KZ149933    PZC77284.1    ODYU01005642    SOQ46699.1    JTDY01001740    KOB73029.1    GAIX01004964    JAA87596.1    KQ459583    KPI98699.1    AGBW02013744    OWR42889.1    KQ461196    KPJ06461.1    KQ971343    EFA04218.1    GEZM01054428    JAV73662.1    LJIG01009707    KRT82541.1    KK852945    KDR13448.1    GDHF01018283    JAI34031.1    GBXI01000775    JAD13517.1    GAKP01005007    JAC53945.1    GFDF01006609    JAV07475.1    GAMC01009798    GAMC01009797    JAB96758.1    CH933814    EDW05726.1    CH940672    EDW57461.1    CM000366    EDX18027.1    CH916370    EDV99820.1    CH480852    EDW51523.1    AF098069    AE014298    AY069389    CH964239    EDW82832.2    CH954180    EDV46960.1    CM000162    EDX01831.1    KB632380    ERL94123.1    JXJN01013883    JXJN01014542    CH479287    EDW25284.1    CH475440    EAL29371.2    KRT05251.1    AAAB01008811    EAA04944.2    APCN01004726    OUUW01000011    SPP86480.1    AXCM01000149    AXCN02002178    JXUM01060550    JXUM01060551    KQ562107    KXJ76675.1    GGFK01012591    MBW45912.1    CH477857    EAT35581.1    JRES01000720    KNC28960.1    GGFM01007685    MBW28436.1    GGFJ01009115    MBW58256.1    CH902634    KPU75618.1    KA648268    AFP62897.1    ADMH02001974    ETN60111.1    AJWK01020127    NEVH01019960    PNF22241.1    DS232156    EDS36280.1    GFDL01013880    JAV21165.1    GANO01002880    JAB56991.1    CCAG010021492    ATLV01013382    KE524855    KFB37859.1    GEDC01003757    JAS33541.1    GGFL01006258    MBW70436.1    GGFK01012918    MBW46239.1    CVRI01000020    CRK91002.1    GBHO01020846    GBRD01007269    GDHC01012913    JAG22758.1    JAG58552.1    JAQ05716.1    GDRN01066552    JAI64514.1    GGFK01012919    MBW46240.1    UFQT01000023    SSX18025.1    GGMR01011936    MBY24555.1    ABLF02006780    AK342295    BAH72379.1    GECZ01007477    JAS62292.1    GEBQ01014441    JAT25536.1    IACF01005916    LAB71499.1    GBBI01003068    JAC15644.1    ACPB03006354    PPHD01027135    POI26759.1    JU175429    AFJ50953.1    LSYS01008642    OPJ68293.1    GAAZ01001815    JAA96128.1    GBEX01002525    JAI12035.1    GDAY02001795    JAV49637.1    GBGD01002815    JAC86074.1    LMAW01003036    KQK74513.1    AWGT02000038    OXB81330.1    DP000936    ACH97054.1    AADN05000201   

Proteomes

UP000005204    UP000218220    UP000037510    UP000053268    UP000007151    UP000053240    + More
UP000007266    UP000027135    UP000015102    UP000009192    UP000008792    UP000000304    UP000001070    UP000091820    UP000001292    UP000000803    UP000007798    UP000078200    UP000008711    UP000002282    UP000030742    UP000092443    UP000092445    UP000092460    UP000008744    UP000192221    UP000001819    UP000075903    UP000075880    UP000075900    UP000076407    UP000007062    UP000075840    UP000075885    UP000268350    UP000075883    UP000075884    UP000075886    UP000069940    UP000249989    UP000008820    UP000037069    UP000007801    UP000095300    UP000069272    UP000095301    UP000000673    UP000092461    UP000235965    UP000002320    UP000076408    UP000092444    UP000030765    UP000183832    UP000007819    UP000015103    UP000190648    UP000192224    UP000051836    UP000198419    UP000001645    UP000000539    UP000189704   

PRIDE

H9J0E8    Q1HQ79    Q9VXP4   

Pfam

PF13472   Lipase_GDSL_2        + More
PF07776   zf-AD

Interpro

IPR036514   SGNH_hydro_sf        + More
IPR013830   SGNH_hydro       
IPR036236   Znf_C2H2_sf       
IPR013087   Znf_C2H2_type       
IPR012934   Znf_AD       

SUPFAM

SSF57667   SSF57667       

Gene 3D

3.40.50.1110    

ProteinModelPortal

H9J0E8   Q1HQ79   A0A2A4JK81   E3T795   A0A2W1BUH0   A0A2H1W0T1   + More
A0A0L7LCA6   S4P6N0   A0A194Q134   A0A212EN36   A0A194QSE2   D6WM38   A0A1Y1LJ29   A0A0T6B602   A0A067QW36   T1H764   A0A0K8V568   A0A0A1XRB6   A0A034WIH7   A0A1L8DM70   W8BID0   B4L7L3   B4MGD8   B4R5I2   B4JJR8   A0A1A9WCB5   B4IKD1   Q9VXP4   B4NDC3   A0A1A9VIJ6   B3NXK1   B4PX68   U4UNR6   A0A1A9XC38   A0A1B0AA04   A0A1B0BGJ7   B4HC99   A0A1W4VGH3   Q29CP5   A0A182VEM1   A0A182INC2   A0A182RIJ7   A0A182XGM4   Q7QI30   A0A182IDK9   A0A182PL01   A0A3B0KDW2   A0A182MR10   A0A182NCB6   A0A182QI32   A0A182GFW5   A0A2M4AYW7   Q16MM3   A0A0L0C9S7   A0A2M3ZIQ9   A0A2M4BYV9   A0A0P9BVV4   A0A1I8NR39   T1PJX9   A0A182F9Z5   A0A1I8MBK3   W5J810   A0A1B0GJC3   A0A2J7Q0Y2   B0WX19   A0A182Y4X2   A0A1Q3F0T0   U5ET95   A0A1B0FLK2   A0A084VIR5   A0A1B6E6I7   A0A2M4CYM3   A0A2M4AZM0   A0A1J1HTW7   A0A0A9XV54   A0A0P4W7Q9   A0A2M4AZN4   A0A336LK13   A0A2S2P562   C4WWV9   A0A1B6GIM2   A0A1B6LPE6   A0A2P2IBV9   A0A023F3X3   T1H8F4   A0A2P4SRN4   J3S9A1   A0A1V4J7S4   T1E4R1   A0A0F7Z4L0   A0A1W7RES4   A0A1W4YH56   A0A069DXJ5   A0A0Q3QN95   A0A226PPB0   G1MW37   R4GL78   B5SNQ5   A0A1D5PMU2   A0A1U7TDJ3  

PDB

1VYH     E-value=1.28306e-53,     Score=527

KEGG

733103    K16795 platelet-activating factor acetylhydrolase IB subunit beta/gamma [EC:3.1.1.47] | (RefSeq) pla

PATHWAY

00565    Ether lipid metabolism - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0016787   GO:0005634   GO:0008270   GO:0003676   GO:0016021   GO:0007283   GO:0005886   GO:0005829   GO:0001650   GO:0016239  

Length:

225

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00039

Exp number, first 60 AAs:

0.0001

Total prob of N-in:

0.03778

outside

1  -  225

 

 

Pi

204.160216

Theta

145.172875

Tajima's D

0.173419

CLR

0.304738

CSRT

0.414329283535823

Interpretation

Uncertain