SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02086
Pre Gene Modal
BGIBMGA002983
Annotation
PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101743043_[Bombyx_mori]
Location
Bomo_Chr4(+):11842868-11857271      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.853
 

Sequence

CDS
ATGGACCCAGTGATTGATAATGAATGGCTCAGCATAAAGCATGATCCCGTGGAAGAAACTCCAGTTGTCGGCAATGTTTCTCGTAGTTGGCAATGGCGAGAGCTCGGAGCGAATCCACCACACTACCCTGCAAGCAAAACAGTCCTAGAAAATGCTGCTGAAGATATTTTAGTTCAGAAACCACTGAAAATTAGAAGCTGCGACCTACCAGGATATCCAAGGTCAACTTTTTTGATGGTTTTCAGTCCTGATGGGACAAAAGTTGCATCAACCCATGGCAATCATAATGTGTATGTGTCTGATTTGGCTAGTGGAAAACACCTTAAGATTCTAGAGGGACACCCAAGAACACCATGGTGTATAGCATTTCACCCGTCACATACACAGCTTATTGGCTCTGGGTGTCTTGGTGGTCAAGTAAGAGTTTGGGATATGGGAAGTGGTGGAAGTGAAGTGTGGAATGTTCGCTATGAAACAGTGATAGCTTCTATTGCATTTCACCCTCGTGAACAATTACTAGTAATTGCTACTTACAATGAACTATACTTTTGGGATTGGAGTCATCCAGCACCATTCACCAAAGTTACCACTAATAATATAAATGAAAAAGTGAGATATGTTGCGTTCGATGCTCTTGGTTACAAATTAATAACTGGAATATCTGTATCGGGTTGTCCGAGTATGTCTAGTACTTCATTGCTGCAGCAAAGTCCGACAACAGGCACTTCTAACACACAAAATAGCAGTTCTAATAGACGGAACGCCACAGGCAATGCCAATGAAAACCCGCTTGGGATCAATCCCCCAACGGACAATGCTGGTTCAGCACAAGACATGATTGTAAATTCATACCAGAACCTGGTACAAAGATATGACAGTCTAGTAAGGAATTATCAAAGGCTTTTCATGGTACGGCATCGGCTTTCCAATTCTTCTCAATCAACTCCAAATACGATTGATCGAGGAACTGATCCTATGGAAACCGATACATCCCCTGGAACGTCCGGCTGGAGCAGACCTGCACGACCGTCTACAGTTACAACAAACGCTGAGGATGGGGCCAGTACCAGCGGAACGAGACGTCCAGACAGTGGTGAAAGCGGGGATGGAGAAAACAGTAGTCGCTTACTCAATTTAGATGCTTTAACGTTTGACAGTGATCCATCAAGGAATCAAGATTCAGTTTCTGAGCGTTCTCCATTTGGGTCCCGTTCTTCAGCTTTCCAACCGTTAAATGAAACCGGCAGAACATTTAGACCATCCGACCCGAACGAGCGCTCTACAAGATTATTACCCAACCCCTTTTCGTCACCCGGAGGCATCTCGCGATCGGCCCGAGTTAACTTCGGTGAAATGTCCACATCTGGCGACAACGACCCGGCGAACGCGTCGCGCACCAGCATCTTTACCTCGTCGAGAATGAGTTCCACGGCTGGCCGAGTATTAATCTCGCACAGACGGAATTTCTCGCCGATACGACGCGGGCGGATCTCGCTATGGGGTGACTCGCCGACTTCCACCGAGAGCACTCCTACACCCTCTCCTCGAAATATTACGAATTCTTCCGCAAACGAAGAAACGCAGGATACTACCGCACCACGCAGACCTACTATGACTAATTCTTCGACGCAAATGAGTCCCGTACCACCCCTGGACGCGGAGGCCCTCAACGAGAGCTTGGATCTGATTCGGGACATCTTGCGCGATTCCGGAACGAGGCTTTTAAATTTGATTACGGACATGTCGTTGTCGATGGTATCTGCCAGCGAACGGGAGCGACGACGTCGCGCTCACTCTGACGAAGGCTCGCCCGTAGAGCGCCGTCCGCGGCCCCGGCCCCGTCTGCTAAGTGTTGGCTGGCGTCGAGAACTTCTCTCTTCCAGTTCCGACTCGGACAGTGATCGTTCTCTGGAGCCGGATGCTCTTCGCGCTCGCAGCACTGGTTTCAGAGATTCCGTCGACGCGGCCGCTCAGTCGGCGGCTTCGTTGTTGACGAACCTCCCGACCGACCGTTTAATGTTCGATATCTTGACCGATCGAAACGAGAGCGCACCTCGCGATAACGAAGGACTCGACCCCACTCGTTCCAATGATAGATTCCGCGTGCCTGGTCGAGACGACGAAGACGTGGCTCGTGTAGTTCCCGAACCGACTCCCGCAGCTTCAGAACCGGGTCCATCCGAAGTTGATCCTCAACCATCAAGCTCCAGAACCAATCCGTCGCCACCTTTCAGTCGACCTTCAACGAGTAGAGATGAGTTTTGGACGCGCGGATCCTCGGTGTCGTCGGAAGAGGCCTATCGTAAAGTAAGGAACGGGGTGGCCGCGTTGCAGAAACACACAGTACATCTGGCGAATTTATGGTATCGCGGAAATCGTATTTCTATGCGCGAACTTCGCAACTTATGGGAAAACTTGCGCCGTCGTATTCTTGCGTTGCAACGAGATATCGGAAGACAAGACTCCCCGGGTTATTACACTAGATCTCTTTTGGAGAGATGTATGATGTTAGCAGATATCGCAGAACCTATTTCACGCCCTCCAAACAGAAACTTGAGGCGAAGTATGGATAGCGACAGAAATGGTGAAAGAACGGATCACTCGTCAAACGTTGATATGAGTTCACCGAATCGCGGTGTAGCGCAGGACCCTTCGAATTCTACTAACGTGAGAGAAGAAGTACAAACTCGGGCGGGGCGAAATACACAGACAAGATCGCAACATCCGGGAGGTCGGGTGACCACGGCCCGAAGACGAGTTCAGCCGGGCTACAGGTGGCAACCTGAGGATGAACGCAGACGACGTTCGCGTAATATCGCAACAAATCGTTTAGCGCAAAGATATTCAAATAGATCAAGACGAGAATTTACCCGAGCGATAGAAATTAGCGCCACCAAACACGAGTTACGTATGCGAGCGATGCAAGTATTGTCTGTGATGTTCAATATGATGATGATGTGCTTGGAAGAGCGAGGTCTGAGTCAATTAATCATCATCATGCTTCGAACTCTCAAGAAAGCTTTGGTACTTTCGTGGTTTATGGTGATGACGAATAGAAATAGCGGACGTACTGGTAACGGCCCAACACCACCATCGCAGCGCACGGACCCAATGGATGTCGTTCACATACAAAACGAAGATGACGCAAATCCCGTGAACGTAGATGACCATGAAGATACCCAAGTGGCCGAAAATGTTGTTTCGAATACAGAAGTTGTAGACAACACACAAACAATAAAAGAACAAACGCGTGAACAAGAGTCTCGAGACGCCACAAAAGCATCATCCTCAGTAGTTAAGTCTGAAACACCGAATAACCAACAAGACCAGACAAGACTACCGTCACAGAACTACAGATCATCGAGATGGAGCAACAGACTTGCAGTGCAGATAGCCGCTGCTAATAGAAATAATTCTGCAACAGCGTTGAGTAGAAGAGAACTTTACATAGAAAGCAAACGATTAAAAGCCCTACACAGAACAAATCCTTCCGTGCATCCGCTAAATAAGAAAAGAACAGGTCCCCCGATGTCGACATATAGGATTCCGACACTCCGTTGTTTCCCACGTCGCCCTAATATGAACAGACCGAACACTCCCCGATCACAAGAAACAGATCCCATCCCGGGACCTTCAAATTTGCTTCATCCAGAAAACTCTAGTCAGGACCCGCCACGAGCCGAGGGCATGTACGAATTTTATCAACGCGTTAATTTTATACGAATAGCTCACATGCAGGCTGTGAGCCTAAGAAACGCCGCTAGAAACAGATTTAGGCGCTTGCAAACGATACGCCTATACACGCCTTCATCGGTGCGGGAAATGTTTGCTCTTTATTCGAACAATCCAGAAAATCCACCAGAAAACCGACCGCCGCCACAAAGCAACCCCGAATTGGGCAGCCGTCGACAGTTTGCCGTGTACCGACCGCATATCTTGGCGCAACGAATCGACCCCGCAAACGCATCGGAGGAACCCCCTCAGTTCAACAGTGTTGCCAACAACGCAGCGCCACCACCACCGCCACCACCACCGGCGCAAGCACAGGACGCACAGGCGCAACGAGATGGCCAGAACGCTCCGACGCAGAGGCTGCCGAGAATCCACGAATATTTGCAACCGATAATTTTAGCCCAGAACGCGATGGTGGTGGAAGAAGAGGGTGGTGGGCCGGGCGGTATGGGGGGTGCGCGGCGACTGGGCGGCATGGCGGGGCTGCTCGACGCCGGCATCATCTCGGAGACCATGCCTGCCTCCTCGCACCGCGTGCAGGCCTGGGACTTTACCACCGGAAACGTTCCTGAACTAGCCGACGGCAAAAAAAATGTTGTAGTCCAAAGATGCAGAATTCATAACGACGCGAGCATCGACATTTCAAAAGACGGCAGACTGCTGGTGGCGCTGCTTCCCGTTCCCCGCATGAGAAACACAAATCACTGGCTAGGGGTGTACTCGCTGGAGTGGGGTCGCTTGGGTCAGTGCCTCCACACGGCGGTGCTGGAGCAGACGGCCGTGTCGGTGGCGCTGTCCCCCACGGCGCGGCACCTGGCCGTGGGACTGGGCTCCAAACGCTTCACGTCCACGCACCGCGCCCACAACCATGTCTTCGCTCTCCTGTACAAGCTCGACTCGCTCGATAGCTCCAGTCGCACGGGACTGTCGCCGATCAAGGAACTGGAGCAGAACTGGGAGCAGGGGTTCACCAGTCTGAACTGCTTGCGGTGGGCCCCCCAGCCCGGCCAGGGTCTGGTCTACGCCAACAACGCCGGACAGCTTATCGTCATGAGCTAA
Protein
MDPVIDNEWLSIKHDPVEETPVVGNVSRSWQWRELGANPPHYPASKTVLENAAEDILVQKPLKIRSCDLPGYPRSTFLMVFSPDGTKVASTHGNHNVYVSDLASGKHLKILEGHPRTPWCIAFHPSHTQLIGSGCLGGQVRVWDMGSGGSEVWNVRYETVIASIAFHPREQLLVIATYNELYFWDWSHPAPFTKVTTNNINEKVRYVAFDALGYKLITGISVSGCPSMSSTSLLQQSPTTGTSNTQNSSSNRRNATGNANENPLGINPPTDNAGSAQDMIVNSYQNLVQRYDSLVRNYQRLFMVRHRLSNSSQSTPNTIDRGTDPMETDTSPGTSGWSRPARPSTVTTNAEDGASTSGTRRPDSGESGDGENSSRLLNLDALTFDSDPSRNQDSVSERSPFGSRSSAFQPLNETGRTFRPSDPNERSTRLLPNPFSSPGGISRSARVNFGEMSTSGDNDPANASRTSIFTSSRMSSTAGRVLISHRRNFSPIRRGRISLWGDSPTSTESTPTPSPRNITNSSANEETQDTTAPRRPTMTNSSTQMSPVPPLDAEALNESLDLIRDILRDSGTRLLNLITDMSLSMVSASERERRRRAHSDEGSPVERRPRPRPRLLSVGWRRELLSSSSDSDSDRSLEPDALRARSTGFRDSVDAAAQSAASLLTNLPTDRLMFDILTDRNESAPRDNEGLDPTRSNDRFRVPGRDDEDVARVVPEPTPAASEPGPSEVDPQPSSSRTNPSPPFSRPSTSRDEFWTRGSSVSSEEAYRKVRNGVAALQKHTVHLANLWYRGNRISMRELRNLWENLRRRILALQRDIGRQDSPGYYTRSLLERCMMLADIAEPISRPPNRNLRRSMDSDRNGERTDHSSNVDMSSPNRGVAQDPSNSTNVREEVQTRAGRNTQTRSQHPGGRVTTARRRVQPGYRWQPEDERRRRSRNIATNRLAQRYSNRSRREFTRAIEISATKHELRMRAMQVLSVMFNMMMMCLEERGLSQLIIIMLRTLKKALVLSWFMVMTNRNSGRTGNGPTPPSQRTDPMDVVHIQNEDDANPVNVDDHEDTQVAENVVSNTEVVDNTQTIKEQTREQESRDATKASSSVVKSETPNNQQDQTRLPSQNYRSSRWSNRLAVQIAAANRNNSATALSRRELYIESKRLKALHRTNPSVHPLNKKRTGPPMSTYRIPTLRCFPRRPNMNRPNTPRSQETDPIPGPSNLLHPENSSQDPPRAEGMYEFYQRVNFIRIAHMQAVSLRNAARNRFRRLQTIRLYTPSSVREMFALYSNNPENPPENRPPPQSNPELGSRRQFAVYRPHILAQRIDPANASEEPPQFNSVANNAAPPPPPPPPAQAQDAQAQRDGQNAPTQRLPRIHEYLQPIILAQNAMVVEEEGGGPGGMGGARRLGGMAGLLDAGIISETMPASSHRVQAWDFTTGNVPELADGKKNVVVQRCRIHNDASIDISKDGRLLVALLPVPRMRNTNHWLGVYSLEWGRLGQCLHTAVLEQTAVSVALSPTARHLAVGLGSKRFTSTHRAHNHVFALLYKLDSLDSSSRTGLSPIKELEQNWEQGFTSLNCLRWAPQPGQGLVYANNAGQLIVMS

Summary

Uniprot
H9J0E6   A0A2A4JJK4   A0A2H1W0S6   A0A2W1BQK5  
Pubmed
19121390    28756777   
EMBL
BABH01010490    NWSH01001239    PCG72009.1    ODYU01005642    SOQ46695.1    KZ149933    + More
PZC77288.1   
Proteomes
UP000005204    UP000218220   
PRIDE
H9J0E6   
Pfam
PF00400   WD40
Interpro
IPR015943   WD40/YVTN_repeat-like_dom_sf        + More
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
Gene 3D
2.130.10.10    
ProteinModelPortal
H9J0E6   A0A2A4JJK4   A0A2H1W0S6   A0A2W1BQK5  
PDB
5YZV     E-value=2.96445e-08,     Score=145

Ontologies

KEGG
101743043    K17985 activating molecule in BECN1-regulated autophagy protein 1 | (RefSeq) uncharacterized LOC1017
PATHWAY
04137    Mitophagy - animal - Bombyx mori (domestic silkworm)
04140    Autophagy - animal - Bombyx mori (domestic silkworm)
GO
GO:0005515   GO:0008270   GO:0004842   GO:0016567   GO:0046872   GO:0003676   GO:0005739   GO:0006635   GO:0016507   GO:0048384  

Topology

Length:
1596
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01913
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00027
outside
1  -  1596
 
 

Population Genetic Test Statistics

Pi
250.751612
Theta
193.652129
Tajima's D
0.941192
CLR
0.208284
CSRT
0.650567471626419
Interpretation
Uncertain
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