SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02081  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA003186
Annotation
PREDICTED:_eukaryotic_translation_initiation_factor_4A_isoform_X1_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.849 Nuclear   Reliability : 2.48
 

Sequence

CDS
ATGTCTTATTCGTCTGAAAGAAGGTCAGAAGATTGGCCAGAGGATTCCAAAAATGGGCCATCGAAGGATCAAGGTAGTTACGATGGACCTCCGGGAATGGACCCTGGGACACTTGACACCGACTGGGATCAAGTTGTCGAAACCTTCGATGACATGAACCTCAAAGAAGAATTGTTGAGAGGCATATACGCCTATGGTTTTGAAAAACCTTCTGCAATCCAGCAACGCGCAATAATGCCTTGCATCCAAGGACGCGATGTTATCGCTCAAGCCCAGTCAGGAACTGGAAAAACTGCTACTTTCTCTATATCGATTCTACAACAAATCGATACAAGCATTCGTGAATGTCAAGCTTTGATCCTGGCTCCCACAAGAGAGCTGGCCCAACAAATTCAGAAGGTGGTGATAGCTCTTGGTGATCACTTGAATGCTAAATGCCATGCTTGCATTGGTGGCACCAATGTCCGTGAAGATATTCGCCAACTGGAGAGTGGTGTTCATGTGGTGGTGGGCACTCCAGGTCGTGTATATGATATGATAACTCGTCGTGCGCTTCATGCCAACACCATCAAACTTTTTGTTCTTGATGAAGCTGATGAAATGTTGTCCAGAGGTTTCAAGGACCAGATCCATGATGTCTTCAAGATGTTGTCAGCTGATGTTCAAGTCATATTACTCTCTGCTACCATGCCTGATGATGTATTGGAAGTATCTCGATGCTTTATGAGAGATCCTGTACGCATACTTGTACAGAAGGAAGAGCTTACCCTGGAAGGTATTAAACAATTTTACATTGCAATTGAATTAGAAGAATGGAAGCTGGAAACTCTGTGTGACCTGTATGATACACTGTCTATTGCACAAGCTGTAATTTTCTGCAACACCCGTCGCAAGGTGGATTGGCTCACTGAATCTATGCATCTGCGTGACTTTACTGTATCTGCTATGCATGGAGACATGGATCAACGTGAGCGTGAAGTGATCATGAGGCAGTTTCGTACTGGCTCTTCTCGTGTCTTGATCACCACTGATTTATTGGCACGTGGTATTGATGTACAGCAAGTTTCCTGCGTCATCAACTATGATCTGCCATCCAACCGTGAAAATTATATTCACAGGATTGGACGAGGTGGACGTTTTGGTCGTAAGGGAATTGCTATCAACTTTGTGACTGAAGCTGACAGGAGAGCACTGAAGGATATTGAGGACTTCTACCACACTAGTATCGTTGAAATGCCCAGTGATGTGGCCAACCTCATCTAA
Protein
MSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYIHRIGRGGRFGRKGIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI

Summary

Similarity
Belongs to the DEAD box helicase family.
EMBL
BABH01010502    DQ443290    ABF51379.1    DQ150250    AAZ80489.1    NWSH01000373    + More
PCG76856.1    ODYU01008012    SOQ51263.1    MG846893    AXY94745.1    EU366906    ABY66383.1    KC481238    AGK45314.2    GAIX01003242    JAA89318.1    AGBW02009105    OWR51667.1    AK402451    BAM19073.1    AK401090    KQ459583    BAM17712.1    KPI98712.1    KU664392    ANS59102.1    GL435030    EFN74172.1    GL888137    EGI66659.1    ADTU01022136    ADTU01022137    KK107167    QOIP01000010    EZA56277.1    RLU17458.1    GL452895    EFN76608.1    GL762576    EFZ21079.1    KK852820    KDR15558.1    GECZ01025404    GECZ01012564    JAS44365.1    JAS57205.1    AK417653    BAN20868.1    KQ981891    KYN33828.1    KQ979425    KYN21607.1    KQ976394    KYM93358.1    KQ971342    EFA03968.2    JR039259    JR039260    AEY58606.1    AEY58607.1    GDJX01006590    GDJX01003127    JAT61346.1    JAT64809.1    KQ977858    KYM99329.1    GECU01011772    JAS95934.1    GEBQ01024898    JAT15079.1    NEVH01020961    PNF20334.1    KZ288349    PBC27386.1    GBYB01014298    JAG84065.1    GEZM01095793    GEZM01095792    JAV55346.1    GECZ01031842    GECZ01020215    JAS37927.1    JAS49554.1    HE962192    CCJ09440.1    GALX01004263    JAB64203.1    KF986613    AHK26791.1    LJIG01022646    KRT79463.1    BT126582    AEE61546.1    KB631923    ERL87143.1    KQ414612    KOC69173.1    KQ436240    KOX67369.1    GBBI01000195    GEMB01001334    JAC18517.1    JAS01822.1    KQ434823    KZC07265.1    GBGD01001590    JAC87299.1    GFDF01008358    JAV05726.1    GBBM01001216    JAC34202.1    JO843767    AEO35384.1    GBBL01001202    JAC26118.1    GBBK01002575    GBBK01002574    JAC21907.1    GFTR01006017    JAW10409.1    ACPB03021270    GFDF01008357    JAV05727.1    GEFH01003931    JAP64650.1    GFDF01008356    JAV05728.1    GFAC01003319    JAT95869.1    GFPF01012725    MAA23871.1    GEDV01007277    JAP81280.1    GACK01004745    JAA60289.1    NNAY01001596    OXU23477.1    GGLE01006765    MBY10891.1    KQ982268    KYQ58497.1    GEDC01029786    GEDC01000881    JAS07512.1    JAS36417.1    GADI01001791    JAA72017.1    GBYB01014295    JAG84062.1    GBRD01009955    GBRD01009954    JAG55870.1    GBHO01000275    GBHO01000274    JAG43329.1    JAG43330.1    GDHC01005109    GDHC01004757    JAQ13520.1    JAQ13872.1    KK114270    KFM62051.1    IAAA01036835    LAA09358.1    ABJB010152727    ABJB010394996    ABJB010473483    ABJB010762284    ABJB011053478    ABJB011062920    DS640098    EEC01796.1    GL732536    EFX83683.1    GBZX01001383    JAG91357.1    GFAH01000617    JAV47772.1    GDIP01110841    JAL92873.1    GFXV01000795    MBW12600.1    GEFM01003103    JAP72693.1    GDIQ01268204    GDIQ01252900    GDIQ01251644    GDIQ01227492    GDIQ01226344    GDIQ01224053    GDIQ01208959    GDIQ01208958    GDIQ01191318    GDIQ01168419    GDIQ01145185    GDIP01046712    GDIQ01065410    JAK83306.1    JAM57003.1    ABLF02040458    GDIP01112196    JAL91518.1    GDIP01220438    JAJ02964.1    GDIP01072548    JAM31167.1    GDIQ01179712    JAK72013.1    GDIP01072547    JAM31168.1    GDIQ01114441    JAL37285.1    GDIQ01113185    JAL38541.1    GDIQ01241846    JAK09879.1    GDIQ01179711    JAK72014.1    AJWK01033045    AJWK01033046    LBMM01010821    KMQ87207.1    GDIP01136682    JAL67032.1    APGK01037935    KB740949    ENN77191.1    GDIQ01216602    JAK35123.1    GDIQ01207664    JAK44061.1    GDIP01196937    JAJ26465.1    GDIP01254470    JAI68931.1   
Pfam
PF00271   Helicase_C        + More
PF00270   DEAD
PF16041   DUF4793
PF16040   DUF4792
Interpro
IPR027417   P-loop_NTPase        + More
IPR014014   RNA_helicase_DEAD_Q_motif       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR000629   RNA-helicase_DEAD-box_CS       
IPR014001   Helicase_ATP-bd       
IPR001650   Helicase_C       
IPR032008   DUF4792       
IPR032010   DUF4793       
SUPFAM
SSF52540   SSF52540       
PDB
3EIQ     E-value=9.70034e-165,     Score=1489

Ontologies

Topology

Length:
420
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00127
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01328
outside
1  -  420
 
 

Population Genetic Test Statistics

Pi
221.755508
Theta
208.818635
Tajima's D
0.198898
CLR
0.067164
CSRT
0.419829008549573
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
27102218 GIYAYGFEKPSAIQQR 95.45 2e-09
28556443 GIDVQQVSCVINYDLPSNR 100.00 4e-07
28556443 ECQALILAPTR 100.00 4e-07
28556443 ECQALILAPTR 100.00 4e-07
26822097 RSEDWPEDSK 100.00 1e-05
26280517 GIVAHEFIIDVR 100.00 1e-05
25044914 GIYAYGFEK 100.00 1e-05
24402669 GIWQIPFR 100.00 1e-05
27102218 DFTVSAMHGDMDQR 100.00 1e-05
28467696 GIWEPIAVK 100.00 1e-05
28556443 GIDVQQVSCVINYDLPSNR 100.00 1e-05
27102218 QIESGVHVVVGTPGR 100.00 6e-05
28556443 QLESGVHVVVGTPGR 100.00 2e-04
28556443 QLESGVHVVVGTPGR 100.00 2e-04
28556443 QLESGVHVVVGTPGR 100.00 2e-04
28556443 LFVLDEADEMLSR 100.00 2e-04
28556443 LFVLDEADEMLSR 100.00 2e-04
26822097 GIYAYGFEKPSAIQQR 100.00 0.002
26280517 DFTSISDIRK 100.00 0.002
25044914 DFTSPPR 100.00 0.002
27102218 AIKDIEDFYHTSIVEMPSDVANII 100.00 0.002
28467696 DFTSYINDIIGEFPK 100.00 0.002
28556443 EELTLEGIK 100.00 0.002
28556443 DQIHDVFK 100.00 0.002
25044914 GQYVWNDCK 100.00 0.006
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