Silkworm Genome Informatics Database

Gene

KWMTBOMO02077

Pre Gene Modal

BGIBMGA003190

Annotation

senseless_[Danaus_plexippus]

Location

Bomo_Chr4(-):11519688-11535227 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.78

CDS

ATGTCGCGACACGTGCTACTATCACGGCTGGCCGAACAGTTCTGGCCGTCGGCTCCTGTACCGGGACATCGGTTTCCATCGCCCGAACGTAGCGTGTCCCCAACGTCAATTTCGTCGCCACATTCGCCTCCCCGAACACCGGACTCGCCTTTAGAACATCATTTGGAAACAGCGCCTTTAGGGGACTTCGAACTGGCTGGAAGAGCTCTTAAGCATTACGCTCGTGCTACAGAGCTTGGAGCTTTAATGTACTGTAGCAGTCTCGGGGCACTGTATGGTGGCGCGGGAGTTTGGCCTCTGCTGTTGCCCCGCACCCCAACAGACTTCGCCTGCACACCTACGGGCCAGATTAAAAACAGTCCTACAAGAGAAGATGGTGAAGAGGAGCTACCTTTAAATCTGTCAATGAAAAATCGTCAGATTTGGTCGCCGGGTAGTGTATGCGAACGCGAACAAGACGATATTACTCTGCCTATCTGTAAATGGAGCAGACGTGACGACGATGAAGCCCCTTTAGAGTTAGTGAAAAGGTGCCGCAGTAGTCCTGAGAGCACGGAGCGTCCTACCAGTACGGAACCACGCCGATGTCCTTCAGCACCGGCACACCAGAGCTACCAGTTACCATTACCGCCACCGGCAGACCTTAATTATTCGTTGCTCCTTAAAAACGAAAATAAAAATGAGAAAACATTCCAGTGCAAACAATGCGGGAAATGCTTTAAGCGCTCGAGCACCCTGTCCACCCATCTACTGATACACTCTGACACGAGACCCTACCCCTGCCAGTACTGTGGAAAACGCTTCCACCAGAAATCGGATATGAAGAAACACACTTACATACATACAGGTGAGAAGCCGCACAAATGCGTGGTGTGTTCGAAAGCTTTTAGCCAGAGCTCGAACCTAATCACACACATGAGGAAACACACCGGCTATAAGCCCTTCTCGTGTGGACTCTGCGAGAAAGCATTCCAACGTAAGGTGGACCTACGCCGCCATCGTGACTCACAGCATTCGGAGATGAACGAAGCTTCCACCGTTACCTTGCAAGTACCTCACCGTTACAGATACTATGGAGATGAGGCCTCACCACCCCTAACACAGCTTATCACTAATTGA

Protein

MSRHVLLSRLAEQFWPSAPVPGHRFPSPERSVSPTSISSPHSPPRTPDSPLEHHLETAPLGDFELAGRALKHYARATELGALMYCSSLGALYGGAGVWPLLLPRTPTDFACTPTGQIKNSPTREDGEEELPLNLSMKNRQIWSPGSVCEREQDDITLPICKWSRRDDDEAPLELVKRCRSSPESTERPTSTEPRRCPSAPAHQSYQLPLPPPADLNYSLLLKNENKNEKTFQCKQCGKCFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCSKAFSQSSNLITHMRKHTGYKPFSCGLCEKAFQRKVDLRRHRDSQHSEMNEASTVTLQVPHRYRYYGDEASPPLTQLITN

Uniprot

A0A2H1WFY3 A0A0L7LK29 A0A212FD61 A0A194QLP2 A0A194PZF3 D6WLB4 + More
A0A2A3EME0

Pubmed

26227816 22118469 26354079 18362917 19820115

EMBL

ODYU01008411 SOQ51989.1 JTDY01000815 KOB75780.1 AGBW02009105 OWR51674.1 + More
KQ461196 KPJ06478.1 KQ459583 KPI98717.1 KQ971343 EFA04608.2 KZ288210 PBC32925.1

Proteomes

UP000037510 UP000007151 UP000053240 UP000053268 UP000007266 UP000242457 + More

Pfam

PF00096 zf-C2H2

Interpro

IPR013087 Znf_C2H2_type + More
IPR036236 Znf_C2H2_sf

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

A0A2H1WFY3 A0A0L7LK29 A0A212FD61 A0A194QLP2 A0A194PZF3 D6WLB4 + More
A0A2A3EME0

PDB

2KMK E-value=3.99912e-29, Score=319

KEGG

101741643 no KO assigned | (RefSeq) zinc finger protein 629

GO

GO:0003676 GO:0006355 GO:0016021 GO:0046872 GO:0004842 GO:0016567 GO:0005739 GO:0006635 GO:0016507 GO:0048384

Length:

372

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

10.90294

Exp number, first 60 AAs:

0

Total prob of N-in:

0.46516

outside

1 - 372

Pi

221.63972

Theta

180.952665

Tajima's D

0.789782

CLR

0.551367

CSRT

0.597270136493175

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics