Gene

KWMTBOMO02075

Pre Gene Modal

BGIBMGA002978

Annotation

PREDICTED:_transmembrane_9_superfamily_member_4_[Papilio_xuthus]

Location

Bomo_Chr4(+):11502008-11509303      View in EpiBrowser

Full name

Transmembrane 9 superfamily member      

Location in the cell

PlasmaMembrane   Reliability : 4.965

CDS

ATGTTTCAAGTTTATCTTCAGTGGATTCTATTCATTACCATAATTTTAAAAAGTTATGGCTTCTATGTACCTGGTGTGGCACCGGTCGAGTTCAAAAAAGGTCAAAAAATTGAAGTAAAAGCTGTTAAGATGACCAGCATTCATACTCAATTACCATACGAATATTATTCATTGCCTTTGTGTCTCCCAAAAAATGGCACATTTGTGTACAAATCTGAAAACTTAGGAGAAGTTTTGCGCGGAGATCGTATCGTCAATACACCATATGAAGTTCATATGGCAGAGAACATTAAATGCAAACTTCTTTGCCACAGGAAAAACGTTCCTATCAATTGGAGTGTAGAAGATTCTGAAAAAGTTGCTAGTCGTATTGAACATGAATATTTTGTTCACTTATTAGTTGATAATTTACCTGTTGCAACAAAAGTTATAAATGTTGAAACTCTAGAAAGGACTATTGAGCAAGGATATCGTCTTGGATATATGTCTGAAGGAAAGGCCTACATTAATAACCATCTTAAACTGTTACTGAAGTACCATAAGCATAGCCAGGATTCTTATAGAGTAGTGGGATTTGAAGTTGAAACCCATTCAGTTTCTAAAGATGAATTAATATTTACTGATGATACTTGTCAAATACCAGTCAAACCAAAGCCACAGTTAGTTAATGAAGATACTGGTACAAAGTTGTACTTCACATACTCTGTGGAATGGGGAGAATCAGATATTAGCTGGGCGTCAAGATGGGACATTTATTTGGGCATGAAGGATGTACAGATACATTGGTTCTCTATTATTAATTCTGTTGTTGTATTATTTTTCTTGTCAGCCATATTAACAATGATAATGGTACGAACATTGAGACGAGACATAGCTCGCTATAATTCAGTTGAAGGAATTGATGACATGATGGAAGAAACAGGATGGAAATTAGTACATGGAGATGTCTTCCGACCTCCTCCTAAGAGGATGTTGTTTGCAGCTGTGGTGGGAAGTGGGATACAAGTCTTTCTGATGGCATTGATAACAATATTTATCGCGATGCTTGGTATGCTGTCGCCGGCAAGTCGAGGGGCCTTAATGACCGCCGCGATTTTCCTATACGTATTTATGGGGTTGATCGCGGGTTATTTCTCGGCGCGCCTCTATAATACAATGAAAGGCAAACAATGGAAACAAGCCGCATTCCTGACGGCAACGCTGTACCCCGCCATTGTCTTTGGCACATGTTTCTTTTTAAACTTCTTTATAATGGGCAAACATTCCAGCGGTGCTGTACCGTTTTCGACTATGATGGCCCTATTGTGTTTATGGTTTTGTATTTCATTACCGTTGGTTTATTTGGGTTATTATTTCGGATGCCGAAAACAGCCTTTCCAACACCCTGTAAGGACAAATTTCATTCCCAGGAAAATACCTGAACAAGTTTGGTATATGAATGTATTGATATGCGTTTTGATGGCAGGAATACTGCCCTTCGGAGCCGTATACATCGAGTTGTTCTTCATCTACAACGCACTTTGGGAGAACCAATTCTATTATCTTTTTGGATTTTTATTTTTAGTATTTTGCATTTTGGTTGTGTCCGTATCTCAGATATCGATATGTATGGTTTACTTCCAACTCTGCGGTGAGGACTACCACTGGTGGTGGAAAAGCTTCTTTGTATCAGGTGGATCTGCAGTGTATATATTGATTTATTCAATATTCTATTTCTTCAAGAAATTAGAGATAACAGAATTTATACCGACGTTACTATACATAGGTTATACTGGTCTCATGGTATTGACTTTTTGGCTTCTTACCGGTACCATTGGATTTTTCGCAGCATATACATTTATTAGAAAAATATACGCTGCTGTAAAAATAGATTAA

Protein

MFQVYLQWILFITIILKSYGFYVPGVAPVEFKKGQKIEVKAVKMTSIHTQLPYEYYSLPLCLPKNGTFVYKSENLGEVLRGDRIVNTPYEVHMAENIKCKLLCHRKNVPINWSVEDSEKVASRIEHEYFVHLLVDNLPVATKVINVETLERTIEQGYRLGYMSEGKAYINNHLKLLLKYHKHSQDSYRVVGFEVETHSVSKDELIFTDDTCQIPVKPKPQLVNEDTGTKLYFTYSVEWGESDISWASRWDIYLGMKDVQIHWFSIINSVVVLFFLSAILTMIMVRTLRRDIARYNSVEGIDDMMEETGWKLVHGDVFRPPPKRMLFAAVVGSGIQVFLMALITIFIAMLGMLSPASRGALMTAAIFLYVFMGLIAGYFSARLYNTMKGKQWKQAAFLTATLYPAIVFGTCFFLNFFIMGKHSSGAVPFSTMMALLCLWFCISLPLVYLGYYFGCRKQPFQHPVRTNFIPRKIPEQVWYMNVLICVLMAGILPFGAVYIELFFIYNALWENQFYYLFGFLFLVFCILVVSVSQISICMVYFQLCGEDYHWWWKSFFVSGGSAVYILIYSIFYFFKKLEITEFIPTLLYIGYTGLMVLTFWLLTGTIGFFAAYTFIRKIYAAVKID

Similarity

Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.

Feature

chain  Transmembrane 9 superfamily member

Uniprot

H9J0E2   A0A2H1WXU4   A0A212FD46   A0A194QND0   A0A1E1WC95   A0A194PK74   + More
A0A067R9J9   A0A2J7PND9   A0A1Y1MD58   W5JB70   A0A1I8JTM0   A0A182L7Y4   A0A182ILT2   Q7Q110   A0A2M4BH96   A0A023EVD8   A0A2M3Z2M0   A0A2M4AA45   A0A2M4BHC9   A0A182UZX6   Q171C2   A0A182QJ54   B0WGC1   U5EWA6   A0A182MJF2   A0A1Q3FBL3   A0A0L0CIX9   A0A1B0GBD0   A0A1B0A641   A0A1A9WU99   A0A0K8VPA2   W8C540   A0A0K8V746   A0A182PEF7   A0A0A1XKK7   A0A1B0DH71   A0A1I8NQN6   A0A0M3QU86   A0A1B0CTY3   B4M8K2   Q9V3N6   B4KIW7   A0A1L8DUL4   A0A195BYT1   A0A158NMA9   A0A182F339   A0A1I8M8T6   A0A3B0JYF3   A0A0J9R241   A0A151JVR9   B4HX86   A0A1W4V7D4   A0A151IE66   B4P3P2   A0A0J7L1M0   B4MYQ8   F4WK19   A0A3L8DL30   Q29K63   B4GWY4   A0A026WFE1   B3NAE5   A0A1A9V1P4   A0A151X279   A0A154P6B9   A0A088A1M4   A0A2A3EJ76   A0A0C9Q6Y4   A0A0L7QVT0   A0A139WH92   E9J4J5   B4JCW2   B3MV54   A0A1W4WPF0   A0A182TEF5   A0A1B6K137   B4Q550   E2C2S3   A0A1B6ETI8   A0A1B6LF31   A0A0L7LKQ9   A0A1B6DT05   K7IQV5   A0A182NNY2   A0A310SIS0   A0A1W7R9E1   A0A2L2YDS0   A0A182R1U2   A0A182W8M6   A0A2L2YDT7   L7M2F2   A0A3B0JWJ9   A0A131YHE9   A0A224ZAY0   A0A1B0C3N8   A0A182GUY6   A0A0P5IPU6   A0A0P6BYV3   E0VU80   A0A3B0JTL8  

Pubmed

19121390    22118469    26354079    24845553    28004739    20920257    + More
23761445    20966253    12364791    24945155    17510324    26108605    24495485    25830018    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    21347285    25315136    22936249    17550304    21719571    30249741    15632085    24508170    18362917    19820115    21282665    20798317    26227816    20075255    26561354    25576852    26830274    28797301    26483478    20566863   

EMBL

BABH01010518    ODYU01011824    SOQ57786.1    AGBW02009105    OWR51676.1    KQ461196    + More
KPJ06480.1    GDQN01006454    JAT84600.1    KQ459601    KPI93722.1    KK852840    KDR15208.1    NEVH01023954    PNF17845.1    GEZM01039708    JAV81277.1    ADMH02001979    ETN60095.1    APCN01001645    AAAB01008980    EAA13912.2    GGFJ01003180    MBW52321.1    GAPW01000500    JAC13098.1    GGFM01002013    MBW22764.1    GGFK01004353    MBW37674.1    GGFJ01003220    MBW52361.1    CH477459    EAT40604.1    AXCN02002097    DS231924    EDS26859.1    GANO01001505    JAB58366.1    AXCM01001780    GFDL01010157    JAV24888.1    JRES01000422    KNC31414.1    CCAG010022546    GDHF01011636    JAI40678.1    GAMC01001982    JAC04574.1    GDHF01017585    JAI34729.1    GBXI01002751    JAD11541.1    AJVK01006029    AJVK01006030    CP012523    ALC40199.1    AJWK01028170    AJWK01028171    CH940654    EDW57528.1    AE014134    AY058275    AAF53324.1    AAL13504.1    AHN54421.1    CH933807    EDW13480.1    GFDF01003952    JAV10132.1    KQ976395    KYM93086.1    ADTU01020321    OUUW01000010    SPP85462.1    CM002910    KMY90148.1    KQ981697    KYN37537.1    CH480818    EDW51666.1    KQ977890    KYM98989.1    CM000157    EDW88343.1    LBMM01001235    KMQ96672.1    CH963913    EDW77247.1    GL888190    EGI65469.1    QOIP01000007    RLU21081.1    CH379061    EAL33315.2    CH479195    EDW27311.1    KK107238    EZA54777.1    CH954177    EDV58647.1    KQ982584    KYQ54398.1    KQ434819    KZC06894.1    KZ288250    PBC31081.1    GBYB01009878    JAG79645.1    KQ414722    KOC62710.1    KQ971343    KYB27333.1    GL768105    EFZ12247.1    CH916368    EDW03201.1    CH902624    EDV33119.1    GECU01002539    JAT05168.1    CM000361    EDX04956.1    GL452203    EFN77758.1    GECZ01028569    JAS41200.1    GEBQ01017672    JAT22305.1    JTDY01000815    KOB75776.1    GEDC01028677    GEDC01008498    GEDC01000983    JAS08621.1    JAS28800.1    JAS36315.1    KQ765234    OAD54014.1    GFAH01000628    JAV47761.1    IAAA01010797    LAA06278.1    IAAA01010798    LAA06279.1    GACK01006819    JAA58215.1    SPP85463.1    GEDV01010200    JAP78357.1    GFPF01012766    MAA23912.1    JXJN01025052    JXUM01089932    JXUM01089933    JXUM01089934    KQ563805    KXJ73252.1    GDIQ01210399    JAK41326.1    GDIP01007342    LRGB01000024    JAM96373.1    KZS21374.1    DS235781    EEB16936.1    SPP85464.1   

Proteomes

UP000005204    UP000007151    UP000053240    UP000053268    UP000027135    UP000235965    + More
UP000000673    UP000075840    UP000075882    UP000075880    UP000007062    UP000075903    UP000008820    UP000075886    UP000002320    UP000075883    UP000037069    UP000092444    UP000092445    UP000091820    UP000075885    UP000092462    UP000095300    UP000092553    UP000092461    UP000008792    UP000000803    UP000009192    UP000078540    UP000005205    UP000069272    UP000095301    UP000268350    UP000078541    UP000001292    UP000192221    UP000078542    UP000002282    UP000036403    UP000007798    UP000007755    UP000279307    UP000001819    UP000008744    UP000053097    UP000008711    UP000078200    UP000075809    UP000076502    UP000005203    UP000242457    UP000053825    UP000007266    UP000001070    UP000007801    UP000192223    UP000075902    UP000000304    UP000008237    UP000037510    UP000002358    UP000075884    UP000075900    UP000075920    UP000092460    UP000069940    UP000249989    UP000076858    UP000009046   

PRIDE

H9J0E2    Q9V3N6    L7M2F2   

Pfam

PF02990   EMP70        + More
PF01396   zf-C4_Topoisom
PF01751   Toprim
PF01131   Topoisom_bac
PF06839   zf-GRF
PF16699   CSTF1_dimer
PF00400   WD40
PF00651   BTB
PF00106   adh_short

Interpro

IPR004240   EMP70        + More
IPR010666   Znf_GRF       
IPR013825   Topo_IA_cen_sub2       
IPR003602   Topo_IA_DNA-bd_dom       
IPR020846   MFS_dom       
IPR023405   Topo_IA_core_domain       
IPR013498   Topo_IA_Znf       
IPR023406   Topo_IA_AS       
IPR034144   TOPRIM_TopoIII       
IPR013824   Topo_IA_cen_sub1       
IPR003601   Topo_IA_2       
IPR013826   Topo_IA_cen_sub3       
IPR013497   Topo_IA_cen       
IPR006171   TOPRIM_domain       
IPR023298   ATPase_P-typ_TM_dom_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR011333   SKP1/BTB/POZ_sf       
IPR000210   BTB/POZ_dom       
IPR019775   WD40_repeat_CS       
IPR038184   CSTF1_dimer_sf       
IPR036322   WD40_repeat_dom_sf       
IPR032028   CSTF1_dimer       
IPR036291   NAD(P)-bd_dom_sf       
IPR002347   SDR_fam       

SUPFAM

SSF56712   SSF56712        + More
SSF81665   SSF81665       
SSF54695   SSF54695       
SSF50978   SSF50978       
SSF51735   SSF51735       

Gene 3D

1.10.290.10     1.10.460.10     2.70.20.10     1.20.960.50     2.130.10.10    

CDD

cd06174  MFS
cd00186  TOP1Ac
cd03362  TOPRIM_TopoIA_TopoIII

ProteinModelPortal

H9J0E2   A0A2H1WXU4   A0A212FD46   A0A194QND0   A0A1E1WC95   A0A194PK74   + More
A0A067R9J9   A0A2J7PND9   A0A1Y1MD58   W5JB70   A0A1I8JTM0   A0A182L7Y4   A0A182ILT2   Q7Q110   A0A2M4BH96   A0A023EVD8   A0A2M3Z2M0   A0A2M4AA45   A0A2M4BHC9   A0A182UZX6   Q171C2   A0A182QJ54   B0WGC1   U5EWA6   A0A182MJF2   A0A1Q3FBL3   A0A0L0CIX9   A0A1B0GBD0   A0A1B0A641   A0A1A9WU99   A0A0K8VPA2   W8C540   A0A0K8V746   A0A182PEF7   A0A0A1XKK7   A0A1B0DH71   A0A1I8NQN6   A0A0M3QU86   A0A1B0CTY3   B4M8K2   Q9V3N6   B4KIW7   A0A1L8DUL4   A0A195BYT1   A0A158NMA9   A0A182F339   A0A1I8M8T6   A0A3B0JYF3   A0A0J9R241   A0A151JVR9   B4HX86   A0A1W4V7D4   A0A151IE66   B4P3P2   A0A0J7L1M0   B4MYQ8   F4WK19   A0A3L8DL30   Q29K63   B4GWY4   A0A026WFE1   B3NAE5   A0A1A9V1P4   A0A151X279   A0A154P6B9   A0A088A1M4   A0A2A3EJ76   A0A0C9Q6Y4   A0A0L7QVT0   A0A139WH92   E9J4J5   B4JCW2   B3MV54   A0A1W4WPF0   A0A182TEF5   A0A1B6K137   B4Q550   E2C2S3   A0A1B6ETI8   A0A1B6LF31   A0A0L7LKQ9   A0A1B6DT05   K7IQV5   A0A182NNY2   A0A310SIS0   A0A1W7R9E1   A0A2L2YDS0   A0A182R1U2   A0A182W8M6   A0A2L2YDT7   L7M2F2   A0A3B0JWJ9   A0A131YHE9   A0A224ZAY0   A0A1B0C3N8   A0A182GUY6   A0A0P5IPU6   A0A0P6BYV3   E0VU80   A0A3B0JTL8  

KEGG

101741930    K17086 transmembrane 9 superfamily member 2/4 | (RefSeq) transmembrane 9 superfamily member 4

GO

GO:0016021   GO:0072657   GO:0016020   GO:0005769   GO:0003677   GO:0005694   GO:0006265   GO:0003917   GO:0008270   GO:0072659   GO:0005886   GO:0061060   GO:0006909   GO:0035010   GO:0005737   GO:0050829   GO:0012505   GO:0004842   GO:0016567   GO:0046872   GO:0003676   GO:0005739   GO:0006635   GO:0016507   GO:0048384  

PANTHER

PTHR10766  

SignalP

Position:   1 - 20,         Likelihood:  0.862654

 

 

Length:

624

Number of predicted TMHs:

10

Exp number of AAs in TMHs:

223.50593

Exp number, first 60 AAs:

19.06029

Total prob of N-in:

0.85256

POSSIBLE N-term signal

sequence

inside

1  -  4

TMhelix

5  -  27

outside

28  -  261

TMhelix

262  -  284

inside

285  -  326

TMhelix

327  -  349

outside

350  -  358

TMhelix

359  -  381

inside

382  -  393

TMhelix

394  -  416

outside

417  -  430

TMhelix

431  -  453

inside

454  -  475

TMhelix

476  -  498

outside

499  -  517

TMhelix

518  -  540

inside

541  -  552

TMhelix

553  -  572

outside

573  -  586

TMhelix

587  -  609

inside

610  -  624

 

 

Pi

292.497831

Theta

207.505331

Tajima's D

1.156993

CLR

0.046175

CSRT

0.697315134243288

Interpretation

Uncertain