Gene

KWMTBOMO02073

Annotation

PREDICTED:_radial_spoke_head_10_homolog_B-like_[Amyelois_transitella]

Location

Bomo_Chr4(+):11491498-11493265      View in EpiBrowser

Full name

Radial spoke head 10 homolog B2       + More
Radial spoke head 10 homolog B      

Location in the cell

Cytoplasmic   Reliability : 2.189

CDS

ATGTCTGGCTATGGTATTTACATTTGGGATGCCTATAATAATAATTCTTTATCTTTACCATCCATAAATATATACCGAGGCTTCTGGGTTAAGGGGCAGCGTAATGGCTACGGTATTTTGAATTTGGGGCTTGGCGCAAGTTCACACTACAGAGGAGAATTTCAAAATAACAAGAAGAACGGAACAGGAAAGTTTGTGACCAACAATGGCCTTGTTCTGCAGCATAAAACACTTTTTCTTAACGATAATTTAAGTGATATGGCGCCCGAGGAAGATTGTTGCGAATTGTTGCAACAAGAAAAACATTGTCAGGAAGTCGAACCTTTTTTATTCGATATATGTGCTGATCACACTATCGGACTTGCATACCATGTAGAAGAAGCTATAAAAAATATTGATAAAGGAATGGAAGACAGGAGTAAAATAATTAATGATTACTTGGAGAGTAACATGTCACAATACCGTAATGAGCTAAGGAGAAATACAATGCCTTACGACAATACTTACCCGTTCAGTATAGAAGACTTCATAGATTTTGAAGTAGATTCTCTACAAAAGTCACTTCGGTGTTATGAAACTGAGTTAAAAGTGATTTATTACAAGTATGCTACAATTTTCAATAAAGAGGAGATTAATTTCACACCGGTTTTAATACGATTTGGCTTGTGGCAATTATTTTTCGATTGCAATGTACACGAGAAGGGCCTAACACTTGTCGAAATCGATAAAATTTTCCACAAAAATCCTCAATGGTTAGCGAGAACACCACATAATCCTTTTGAAGAAATATATTTTTGGCAATTTCTACACAGTATATTATCTGTGGCCACTAAATTGTATGCATTGAAAGAGCTTCCTAAAACAAAACCAGACACGCTTCTGTCGACTGCGTTAAGACAGTTTATAGAAAAGGATGTTTGGCCAAATGTTGGTAGATGCAAAGGTCTGTCAGAGTAA

Protein

MSGYGIYIWDAYNNNSLSLPSINIYRGFWVKGQRNGYGILNLGLGASSHYRGEFQNNKKNGTGKFVTNNGLVLQHKTLFLNDNLSDMAPEEDCCELLQQEKHCQEVEPFLFDICADHTIGLAYHVEEAIKNIDKGMEDRSKIINDYLESNMSQYRNELRRNTMPYDNTYPFSIEDFIDFEVDSLQKSLRCYETELKVIYYKYATIFNKEEINFTPVLIRFGLWQLFFDCNVHEKGLTLVEIDKIFHKNPQWLARTPHNPFEEIYFWQFLHSILSVATKLYALKELPKTKPDTLLSTALRQFIEKDVWPNVGRCKGLSE

Keywords

Alternative splicing   Coiled coil   Complete proteome   Polymorphism   Reference proteome   Repeat  

Feature

chain  Radial spoke head 10 homolog B2
splice variant  In isoform 2.
sequence variant  In dbSNP:rs17855578.

Uniprot

A0A212FD60   A0A0L7LK03   A0A194QLQ1   A0A194PJW6   A0A2H1X1H6   A0A1B6H2Y5   + More
A0A0T6BBI9   A0A2A3E207   A0A1B6CSL3   D6WLY8   A0A1B6HIH9   A0A088ABB8   A0A154P8E5   A0A1S3SJB4   A0A1S3SJC0   A0A1S3SJC6   A0A060X2K8   A0A3P8YQH4   A0A3P8UF30   E0VY35   A0A1S3FS45   F6XFX9   U3CCP8   G1S067   F7EX85   H2PLG7   A0A3B3S576   A0A2J8IW88   H2QU64   A0A087Y613   A0A0L0HHY6   B3KSE9   A0A1U7UYU0   A0A096N6J2   U3IAP7   B2RC85   G2HGX3   A0A3P9IHI0   A0A315V587   A0A2U3VHI9   P0C881   A0A1A8AIS5   A0A2T7NNS4   A0A2I3RKS4   A0A2Y9DUY8   F1RFN1   A0A3B4DK77   A0A340WJM3   A0A1A8MT48   A0A2Y9J711   A0A3Q0HEI0   A0A2K5MJ77   F7EX75   M3YYQ8   A0A226PT86   A0A1V4KS45   A0A3P8PYU0   B3S2M3   A0A369SMW2   A0A1S3J1Z2   A0A1A7WK17   A0A2I3GVU4   A0A1A7Z6D2   C3Y185   A0A2C9JTZ5   A0A224X5J0   A0A2K6GCG5   R7UYD4   A0A1A7XEB6   A0A210Q4K1   A0A2I0M0W1   A0A2I3LIJ4   B2RC85-2   E2R785   A0A267DPT4   A0A2K5BXB7   A0A151N1W9   A0A2J8IWA1   G3T8G9   G3WMG1   A0A3B3YEI5   G1TGH9   A0A2U3YTW7   G3WMG0   A0A2I3S1C3   A0A2U4AZJ2   A0A2U4AZ77   A0A2U4AZ57   H0YFY2   A0A1I8JBR1   A0A2Y9GDP3   G1LR06  

Pubmed

22118469    26227816    26354079    18362917    19820115    24755649    + More
25069045    24487278    20566863    25243066    17431167    29240929    16136131    14702039    23749191    12853948    15489334    21484476    17554307    29703783    24621616    18719581    30042472    18563158    15562597    23254933    28812685    23371554    16341006    22293439    21709235    21993624    26392545    20010809   

EMBL

AGBW02009105    OWR51679.1    JTDY01000815    KOB75777.1    KQ461196    KPJ06483.1    + More
KQ459601    KPI93726.1    ODYU01012724    SOQ59171.1    GECZ01000715    JAS69054.1    LJIG01002246    KRT84694.1    KZ288469    PBC25362.1    GEDC01020973    JAS16325.1    KQ971343    EFA03382.1    GECU01033193    JAS74513.1    KQ434844    KZC08199.1    FR904906    CDQ73487.1    DS235843    EEB18291.1    GAMS01006449    JAB16687.1    ADFV01104281    ADFV01104282    ADFV01104283    ADFV01104284    ADFV01104285    JSUE03027731    JSUE03027732    ABGA01163993    ABGA01163994    ABGA01163995    ABGA01163996    NBAG03000572    PNI14781.1    PNI14782.1    PNI14784.1    AC184156    AC192442    AYCK01000711    KQ257455    KND00707.1    AK093411    BAG52711.1    ADON01076476    AK314983    AC073343    BC034495    BC044242    BC157864    BC157871    AK305987    BAK62981.1    NHOQ01002872    PWA14075.1    AC005995    AA382672    AW474289    HADY01016098    HAEJ01017811    SBP54583.1    PZQS01000010    PVD22818.1    AC193266    AEMK02000014    HAEF01018673    SBR59832.1    AEYP01085086    AEYP01085087    AEYP01085088    AEYP01085089    AEYP01085090    AEYP01085091    AWGT02000022    OXB82710.1    LSYS01001700    OPJ87251.1    DS985247    EDV23121.1    NOWV01000001    RDD47751.1    HADW01004531    SBP05931.1    HADX01015882    SBP38114.1    GG666480    EEN65625.1    GFTR01008669    JAW07757.1    AMQN01005752    KB296765    ELU11324.1    HADW01014938    SBP16338.1    NEDP02005036    OWF43641.1    AKCR02000052    PKK23312.1    AAEX03004285    NIVC01003490    PAA51176.1    AKHW03004154    KYO30645.1    PNI14785.1    AEFK01075606    AEFK01075607    AEFK01075608    AEFK01075609    AEFK01075610    AC079882    ACTA01002360    ACTA01010360    ACTA01018360    ACTA01186349    ACTA01194347   

Proteomes

UP000007151    UP000037510    UP000053240    UP000053268    UP000242457    UP000007266    + More
UP000005203    UP000076502    UP000087266    UP000193380    UP000265140    UP000265120    UP000009046    UP000081671    UP000008225    UP000001073    UP000006718    UP000001595    UP000261540    UP000002277    UP000028760    UP000053201    UP000189704    UP000028761    UP000016666    UP000005640    UP000265200    UP000245340    UP000245119    UP000248480    UP000008227    UP000261440    UP000265300    UP000248482    UP000189705    UP000233060    UP000000715    UP000198419    UP000190648    UP000265100    UP000009022    UP000253843    UP000085678    UP000001554    UP000076420    UP000233160    UP000014760    UP000242188    UP000053872    UP000002254    UP000215902    UP000233020    UP000050525    UP000007646    UP000007648    UP000261480    UP000001811    UP000245341    UP000245320    UP000095280    UP000248481    UP000008912   

PRIDE

B2RC85    P0C881    F1RFN1    H0YFY2   

Pfam

PF02493   MORN        + More
PF01119   DNA_mis_repair
PF08676   MutL_C

Interpro

IPR003409   MORN        + More
IPR042121   MutL_C_regsub       
IPR014721   Ribosomal_S5_D2-typ_fold_subgr       
IPR002099   DNA_mismatch_repair_N       
IPR014762   DNA_mismatch_repair_CS       
IPR013507   DNA_mismatch_S5_2-like       
IPR037198   MutL_C_sf       
IPR036890   HATPase_C_sf       
IPR042120   MutL_C_dimsub       
IPR014790   MutL_C       
IPR020568   Ribosomal_S5_D2-typ_fold       
IPR003594   HATPase_C       

SUPFAM

SSF118116   SSF118116        + More
SSF54211   SSF54211       
SSF55874   SSF55874       

Gene 3D

2.30.42.20     3.30.1370.100     3.30.230.10     3.30.565.10    

CDD

cd00075  HATPase_c

ProteinModelPortal

A0A212FD60   A0A0L7LK03   A0A194QLQ1   A0A194PJW6   A0A2H1X1H6   A0A1B6H2Y5   + More
A0A0T6BBI9   A0A2A3E207   A0A1B6CSL3   D6WLY8   A0A1B6HIH9   A0A088ABB8   A0A154P8E5   A0A1S3SJB4   A0A1S3SJC0   A0A1S3SJC6   A0A060X2K8   A0A3P8YQH4   A0A3P8UF30   E0VY35   A0A1S3FS45   F6XFX9   U3CCP8   G1S067   F7EX85   H2PLG7   A0A3B3S576   A0A2J8IW88   H2QU64   A0A087Y613   A0A0L0HHY6   B3KSE9   A0A1U7UYU0   A0A096N6J2   U3IAP7   B2RC85   G2HGX3   A0A3P9IHI0   A0A315V587   A0A2U3VHI9   P0C881   A0A1A8AIS5   A0A2T7NNS4   A0A2I3RKS4   A0A2Y9DUY8   F1RFN1   A0A3B4DK77   A0A340WJM3   A0A1A8MT48   A0A2Y9J711   A0A3Q0HEI0   A0A2K5MJ77   F7EX75   M3YYQ8   A0A226PT86   A0A1V4KS45   A0A3P8PYU0   B3S2M3   A0A369SMW2   A0A1S3J1Z2   A0A1A7WK17   A0A2I3GVU4   A0A1A7Z6D2   C3Y185   A0A2C9JTZ5   A0A224X5J0   A0A2K6GCG5   R7UYD4   A0A1A7XEB6   A0A210Q4K1   A0A2I0M0W1   A0A2I3LIJ4   B2RC85-2   E2R785   A0A267DPT4   A0A2K5BXB7   A0A151N1W9   A0A2J8IWA1   G3T8G9   G3WMG1   A0A3B3YEI5   G1TGH9   A0A2U3YTW7   G3WMG0   A0A2I3S1C3   A0A2U4AZJ2   A0A2U4AZ77   A0A2U4AZ57   H0YFY2   A0A1I8JBR1   A0A2Y9GDP3   G1LR06  

KEGG

NA   

GO

GO:0016301   GO:0030983   GO:0016887   GO:0006298   GO:0004519   GO:0032300   GO:0005524  

Length:

318

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.28292

Exp number, first 60 AAs:

0.04607

Total prob of N-in:

0.01767

outside

1  -  318

 

 

Pi

284.889019

Theta

236.327475

Tajima's D

0.784775

CLR

1.311731

CSRT

0.601669916504175

Interpretation

Uncertain