Silkworm Genome Informatics Database

Gene

KWMTBOMO02072

Pre Gene Modal

BGIBMGA009030

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like?_partial_[Papilio_machaon]

Location

Bomo_Chr4(+):11453728-11457725 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.071

CDS

ATGGCAAAGTGTGGAGCATGTGGAAAATTCTTGTCAACCGCGGACTGTGCGCGTTGTAGTAAATGCAGTGACATCTTCCATAAAGGATGCGTGTCAATCCCATCTACGGGCGCTGCGCCTCGGGGCTGGATCTGCCCTAGTTGCTCAGCGAAAGTACCTCGTGGGGATAATACGGCAACTCCTGTACGAGGGTTGACAGCTGTCGGGGTGCATCACACTTCGAGCGAGGGAGATGTTGATGCAGATACGATGAATCGGTCGCTGGAGTCTCGTGTCGACCTTGGTTTAGAAATCCGATCTTTTAAGGATGAGCTGGTGGGCCTAAGAACTGACTTGAGAGAGTGCCGAAATGATATCGCTGAGTTTAAGGAGCTCCTCAAGTCTTGTCATGGACGCATCGACACGGTGGAAGCCCGAGTGCTTGGTCTTGAGGCTCGTCTAGCAGAGATCGTCTCAACAGCAGCAGGTTCTGACTTGGATTCCACGGTGGCTGAACTTCGCATTCAGCTGCGTGAACGCGATCAGGACTTGCTCAGGAATGATATTGACATCATTGGTTTGCCGGAAGTTCGTGAAGAAAGCACTTGTCATTTAGTCCAGGTTGTGGCGGTAAAACTGGGAGTGAAACTTGACATGCGCGACATAGTTCACGCGGAGCGGATTGGTGCAGTAAGACGCAATTTCATTGAGGGCAACGACAATCGTCCTCGTATACTATCAGTACGACTGGCCCGTCGCTCGGTTCGCGATGCACTATTGAAGGGAGCCCGCGTGCGCCGTAACCTCTCCACTACTGATTTAGATGTACCTGGCCCCGTCCGTACTGTATATTTAAATGAACGTTTGTCCGCATATAACCGCAAGCTGTTTGGTACTACCCGTCAAAAGGGAAAGGATAAAGGTTGGAAGTATGTCTGGACCAAGGACGGACGAATTTATATTCGTCGTGGTGATGGTACTCCTGCGCTCAGAATCAGAGTTCAGGCCGACGTGGAGAAGTTTGGGGAGGAGGGCCGTGCACCTTGTGTGCCAGGCTACAGGCTCAAGCATATTCCTCGACCAGTTAGTATAAGGGGTGGTCGTGGTGGCGGGGTGGCCTTTTATCTCAGAGCTGATATAAGTGCTCGAGTGTGTAAGCACCCCGGACATTTGGATGTTGAACAGTTGTGGATAACAGTGAATTTTTGCGGGAAAAAGCTATTAATAGGCACTGCATATCGCCCCCCTTGGTCTGATCTGGAAAATTTCCTAGAGGGATTGACCGAAAGTATTGGTGCTATGGCTCCTTATGACAATATAGTGCTTCTCGGAGATTTTAATGTAAACCTATTGGACTGTAATTGTTCTAGAACAAAAAAAATAAATGAATTTCTAAGCCACTTCAGTCTCTCGCAAATAGTAAGGACTGCAACACACTTTATGAGTGGTAGTAGTACTTTGTTGGATGTTATTTGTACTGACATTGGCGTTAATGATGTCGGGGTTGATTATATTCCCGAGCTTGGCCACCATGCTTTTGTCACATGTGAGACTTTGATCCGAAAGGAAAGACCAATGTCTAGAATGATAACTTCCCGTCAATTTAAAAATATCTTAGAGGAGTTCTTTACTCAGGATCTAAATATAATACCCTGGTCGAACATCACCCTCCTGGATGACGTTGACACGATGGTTTACACCTTTTCTATGTTTATTCTGTACCTGTACGATCTCCATGCTCCGCTCAAAACCCTGAAATTCAAAACACGTTCCACTCCTTGGATTACTGATAATGTCCGATTATTGTTTAAATTGCGAGATGCTGCACGCTATAGATCACATGTAACTCAGGTTCATAGTCATAAGCAGTATTATTTAGACCTTAAGAAGCAGGCAGCTAGCGTCTTAGCATCGGAAAAAAAGACCTACTACAACAATTATATTAATAGCAACTTCGGAAACCCTAAAAAGTTATGGAAAAATCTGAAATCTGATGTGATTCCGTCACATCAGGAGAAAGCATTGCCTGAACACCTTAATGACGCTAATGCTATCAATGAAGCTTTTCTGGATGTACCCGGGGTCTGTAGTTCTGACGTTTCAGGATACTCATTCTTTGAGTATTCTAACACATCTCCAAAGTTTACGCTTAAAACTGTCAACCAGGATACGGTTCTTAAGATTATTAACAGCATTAAATCCAACGCTCAAGGCACTGACGGGATAAGCGGTGAGATGATATCGCTCTCACTGCCTTCAACATTGGAGGCGATTACTAGCATTATCAATAAGTCCATTGATACAAATACATTTCCTGCTCAGTGGCGATGTTCTGTGGTTAGCCCTATTCCGAAAGTCACGCACCCTCAAGCTTTTAAAGATCTTAGGCCTATTAGTGTGTTGCCTTTTCTGTCCAAGATCTTGGAGAAGGTAGTTTACTCACAGGTAGCGGCATATATCGAATCAAATAACATTCTTCCAGAGTTTCAATCGGGTTTCAGAAAAAGCCGAGGAACGGCCGCTGCTCTTACTGACATTGTGGGTAATATTCTCGAGGCTCGGGACAGGAGCCAGGGTACGATACTGACGCTGCTGGATTTCTCACGGGCTTTTGATACAATTAACACTGCCTTACTCTTAGCAAAATTAACTCACTACGGGTTCTCTGATAATGCTGTGGAATGGTTTAGCAGTTATATGTCGAGTAGAACGCAATTTGTACAAATACGGAAAGAAGATGGAACTAAACTAACCTCTACTTCTAAGCCGATTACTAGAGGCGTTCCCCAAGGTTCTGTCCTGGGACCATTGTTGTTTATTTTGTACAGTGCAGATATCATTCAGTGTTTCAAGAATTGTAAATATCATGTTTATGCTGACGATGTACAATTATACCATTCTTTTGATGTTGGAGATACCCCTTCTGCTGTCAGTTTTATCAATGAGGATCTGCAGAGGATTGTCTCTTGGTCTGAACAGAATTCCTTAGTACTGAACCCCTCTAAGTCTAAATACATGATACTAGGCAGTAAATCTCAGATAGCAAAGATTTTATCACTCGATCCTAAGACTGAAGATTCTGTACTCGTTTAG

Protein

MAKCGACGKFLSTADCARCSKCSDIFHKGCVSIPSTGAAPRGWICPSCSAKVPRGDNTATPVRGLTAVGVHHTSSEGDVDADTMNRSLESRVDLGLEIRSFKDELVGLRTDLRECRNDIAEFKELLKSCHGRIDTVEARVLGLEARLAEIVSTAAGSDLDSTVAELRIQLRERDQDLLRNDIDIIGLPEVREESTCHLVQVVAVKLGVKLDMRDIVHAERIGAVRRNFIEGNDNRPRILSVRLARRSVRDALLKGARVRRNLSTTDLDVPGPVRTVYLNERLSAYNRKLFGTTRQKGKDKGWKYVWTKDGRIYIRRGDGTPALRIRVQADVEKFGEEGRAPCVPGYRLKHIPRPVSIRGGRGGGVAFYLRADISARVCKHPGHLDVEQLWITVNFCGKKLLIGTAYRPPWSDLENFLEGLTESIGAMAPYDNIVLLGDFNVNLLDCNCSRTKKINEFLSHFSLSQIVRTATHFMSGSSTLLDVICTDIGVNDVGVDYIPELGHHAFVTCETLIRKERPMSRMITSRQFKNILEEFFTQDLNIIPWSNITLLDDVDTMVYTFSMFILYLYDLHAPLKTLKFKTRSTPWITDNVRLLFKLRDAARYRSHVTQVHSHKQYYLDLKKQAASVLASEKKTYYNNYINSNFGNPKKLWKNLKSDVIPSHQEKALPEHLNDANAINEAFLDVPGVCSSDVSGYSFFEYSNTSPKFTLKTVNQDTVLKIINSIKSNAQGTDGISGEMISLSLPSTLEAITSIINKSIDTNTFPAQWRCSVVSPIPKVTHPQAFKDLRPISVLPFLSKILEKVVYSQVAAYIESNNILPEFQSGFRKSRGTAAALTDIVGNILEARDRSQGTILTLLDFSRAFDTINTALLLAKLTHYGFSDNAVEWFSSYMSSRTQFVQIRKEDGTKLTSTSKPITRGVPQGSVLGPLLFILYSADIIQCFKNCKYHVYADDVQLYHSFDVGDTPSAVSFINEDLQRIVSWSEQNSLVLNPSKSKYMILGSKSQIAKILSLDPKTEDSVLV

Uniprot

K7JAP1 A0A3N0XTH3

Pubmed

20075255

EMBL

AAZX01023386 RJVU01061422 ROJ36303.1

Proteomes

UP000002358

Pfam

PF14529 Exo_endo_phos_2 + More
PF00078 RVT_1

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf
IPR005135   Endo/exonuclease/phosphatase

SUPFAM

SSF56219 SSF56219

Gene 3D

3.60.10.10

ProteinModelPortal

K7JAP1 A0A3N0XTH3

PDB

6AR3 E-value=0.000121728, Score=112

KEGG

105842396 no KO assigned | (RefSeq) uncharacterized LOC105842396

GO

GO:0003964 GO:0005515 GO:0008270 GO:0004842 GO:0016567 GO:0046872 GO:0003676 GO:0005739 GO:0006635 GO:0016507 GO:0048384

Length:

1023

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.18928

Exp number, first 60 AAs:

0.00059

Total prob of N-in:

0.00013

outside

1 - 1023

Pi

145.26718

Theta

157.917475

Tajima's D

-1.308711

CLR

273.134331

CSRT

0.0885955702214889

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree