Gene

KWMTBOMO02067  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003195

Annotation

PREDICTED:_putative_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_DHX16_isoform_X1_[Amyelois_transitella]

Location

Bomo_Chr4(-):11262281-11272386      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.313

CDS

ATGGATAAAAAGAGACGATATTCATCAAGTTCTGATAGCGCTGAAGATGACCGAATTCAAGATCTCAGAGAACGGGATGAATTCGCAAAAAGATTAAAGAAACGAGACGAAGAAAAAATTAGGAAAATAACAGAGGGGAAAAAATCATACGAAGAGGCTGCAAAAAAGTTAAAAATTGAAGCAGAAGACCGCGACAAGCTACTACCGAAACTTCGTGTACAGTCTCGTCGCAAATATTTAGAGAAAAGAAAAGACGACAAAGTTGTAGAATTAGAAGCTGATATTGCCGACGACGAGTATCTGTTTGATGAGAGAATCCTAACAAAAAGAGAAAAAGAAGAAAGGGAACACAAGAAAACTTTATTACAATTAGCTAAAGAACATGAAAAAGCAAGAGAGTTAGAAAATGTTCAAAGATATCATATGCCTCGGGACTTGGGGAAAGGGGAAAAAGGTGAATATGTTGAAGTTGATGAAAATGAGAGGTTGCCACATTCTGAACAGCAAAAATGGGAACAAGAACAAATTAAATCTGCTTTCTTTAAATTTGGTGCAAAAGATGCTAAAGCTACAAATGAATATGATTTATTACTGGATGAACAAATTGATTTCATACAGGCTCTTAAAATGGAAGGTTCTGAAGACAAAAAGGAAAAGTCAGAAATATCAGAATATCAAAAAATTCGAATGACCATTGAAGAAACAAAAAAATCACTTCCAATATATGCGTTTAAACAATCACTTATTGAAGCCATACAAAATTATCAAATTCTAATTGTAGAAGGTGAGACAGGATCTGGCAAAACAACACAAATACCTCAATATCTCCATGAAGCTGGTTTCACTAAAGATGGGAAAAAAATTGGGTGTACACAACCTAGGAGAGTAGCTGCTATGTCAGTTGCTGCAAGAGTTGCACAAGAAATGAACGTAAAACTGGGAAATGAAGTTGGTTATAGTATAAGATTTGAAGATTGCACATCTGATAGAACAGTAATAAAGTACATGACAGATGGAACTCTTCATAGAGAGTTTCTATCAGAACCTGATCTAGCCTCATACAGTGTAATGATCATTGATGAAGCTCATGAACGTACCTTACATACAGATATATTATTTGGTCTTGTAAAAGATATAACCAGATTTAGACCTGATTTAAAATTGCTTATATCCAGCGCAACATTGGATGCTGAGAAATTTTCAACATTCTTTGAAGATGCCCCAATTTTTAGAATCCCGGGAAGGAGATTTCCTGTGGACATCTATTACACAAAGGCACCCGAAGCAGATTATGTAGATGCTTGTGTTGTATCAGTATTACAGATTCATGCCACACAACCTCTTGGTGATATATTGGTTTTTTTAACAGGACAAGAAGAGATTGAAACATGTGTTGAAATGTTACAAGAAAGGACGAAGCGTATAGGCAAAAAACTGCGCGAGCTTTTAATATTACCAGTATATGCCAATTTGCCTAGTGACATGCAAGCTAAAATCTTTGAACAAACTCCTGAAGGAGCTAGAAAAGTCGTTCTTGCTACAAATATAGCTGAAACTTCATTGACAATTGATAATATTATATACGTAATAGACCCAGGTTTTGCCAAACAAAACAACTTCAATTCCAAGACTGGCATGGAAAGTTTAATTGTTGTTCCCATTTCTAAAGCATCAGCAAATCAACGAGCTGGACGAGCCGGAAGGGTTGCTCCTGGAAAATGTTTTAGATTGTACACAGCCTGGGCATATAAATATGAATTAGAAGATAATACTGTACCAGAAATTCAGAGAATAAATTTAGGAAATGCAGTTCTCACTTTAAAAGCTTTAGGCATCAATGATCTAATACATTTTGATTTTTTGGATCCACCACCGCATGAAACATTAGTTTTGGCTTTAGAACAACTTTACGCTCTGGGTGCACTTAATCATCATGGAGAGTTAACAAAAGCAGGCAGAAGGATGGCTGAATTTCCTACCGACCCCATGCTCGCGAAAATGTTGTTAGCTAGTGAAAAATATAAATGTTCTGAAGAGGTTGTCACAATTGCAGCAATGCTATCAGTAAATAGCTCCGTCTTCTACCGGCCTAAAGATAAAATAATCCATGCAGATACAGCAAGAAAAAATTTCTTTCATCACAAAGGAGATCATCTGACAATTATGAACTTATACAATCAGTGGGTTGCTTCAGATTATTCGGTGCAGTGGTGTTATGAAAACTTCGTGCAGTATAGATCGATGAAACGAGCTCGAGATGTTCGTGAACAATTAGTCAGCCTGATGGAAAGGGTAGAAATTGAAATGGTTACAAGTTTATCTGATGATACTAATATAAGAAAGGCTATAACGTCTGGTTATTTCTATCATATAGCAAAATTTTCAAAAGGTGGTCATTATAAAACTGTAAAACATAATCAGACAGTTATGATACATCCTAATAGTGCTCTATTTGAAGACCTTCCACGATGGGTGATTTACCATGAGCTTGTATTTACATCTAAAGAATTTATGAGACAAGTCACCGAAATTGAGAGCAAATGGCTACTGGAGGTAGCGCCTCATTATTACAAATCAAAGGAATTAGAAGATTCAACAAATAAGAAAATGCCCAAAACATTGGGGAAATCTGCAAAAAATTAG

Protein

MDKKRRYSSSSDSAEDDRIQDLRERDEFAKRLKKRDEEKIRKITEGKKSYEEAAKKLKIEAEDRDKLLPKLRVQSRRKYLEKRKDDKVVELEADIADDEYLFDERILTKREKEEREHKKTLLQLAKEHEKARELENVQRYHMPRDLGKGEKGEYVEVDENERLPHSEQQKWEQEQIKSAFFKFGAKDAKATNEYDLLLDEQIDFIQALKMEGSEDKKEKSEISEYQKIRMTIEETKKSLPIYAFKQSLIEAIQNYQILIVEGETGSGKTTQIPQYLHEAGFTKDGKKIGCTQPRRVAAMSVAARVAQEMNVKLGNEVGYSIRFEDCTSDRTVIKYMTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDITRFRPDLKLLISSATLDAEKFSTFFEDAPIFRIPGRRFPVDIYYTKAPEADYVDACVVSVLQIHATQPLGDILVFLTGQEEIETCVEMLQERTKRIGKKLRELLILPVYANLPSDMQAKIFEQTPEGARKVVLATNIAETSLTIDNIIYVIDPGFAKQNNFNSKTGMESLIVVPISKASANQRAGRAGRVAPGKCFRLYTAWAYKYELEDNTVPEIQRINLGNAVLTLKALGINDLIHFDFLDPPPHETLVLALEQLYALGALNHHGELTKAGRRMAEFPTDPMLAKMLLASEKYKCSEEVVTIAAMLSVNSSVFYRPKDKIIHADTARKNFFHHKGDHLTIMNLYNQWVASDYSVQWCYENFVQYRSMKRARDVREQLVSLMERVEIEMVTSLSDDTNIRKAITSGYFYHIAKFSKGGHYKTVKHNQTVMIHPNSALFEDLPRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKSKELEDSTNKKMPKTLGKSAKN

Uniprot

A0A2A4K831   A0A194QNE5   A0A194PJX5   A0A2H1WMD2   A0A212EK55   A0A0L7LPV6   + More
A0A084VME1   A0A1Y1L3E3   A0A182JHN0   A0A1I8MPY7   A0A1S4FRG9   A0A182GGX3   D6WL19   A0A0K8VNA9   A0A034WT90   B0W8U5   A0A1I8QB85   A0A182WGY3   A0A182MDB8   A0A1Q3F626   A0A182YFF5   A0A1J1HZU2   B4M936   B4KKG2   A0A1W4VXM6   B4PAH4   A0A2M4A388   Q9VIZ3   B4Q9H0   W8BKG6   B3NM88   A0A182PDE2   B4I5R9   A0A182R9R0   A0A0L0BV63   B3MNP0   D0QWC8   Q29CK8   B4JPA8   A0A2M4A3Y9   B4N190   A0A0J9TR95   W5JD61   A0A182V7K8   A0A0M4EF76   A0A3B0JWR3   A0A182KUR1   A0A182UAC9   A0A2C9GS63   Q16S17   Q7PW47   A0A1S4H054   A0A2M4A3Z8   A0A1B0FNR5   A0A1A9W044   A0A1B0A523   A0A1B6C691   A0A1A9V9K0   A0A1A9XGT6   A0A182KBK4   A0A1B6HXG4   A0A1B6F5K8   A0A1B6IJQ8   A0A1B0BJF4   A0A2M4BD18   U4UY31   N6UAC1   A0A182QIP3   A0A2M3Z3U1   A0A182NIR5   A0A0A9WZW3   A0A2M4BDA3   A0A0K8URI7   A0A224X6Y1   A0A0V0G8U4   A0A336MJ25   A0A154PGY8   A0A0L7R6Z8   T1I9F2   A0A023F5P9   A0A182NF41   A0A026VYN2   A0A2M4BD63   A0A0C9R953   A0A2A3E8F4   E2B4E2   A0A232FFD3   A0A2S2PY47   K7INH6   A0A158P483   A0A195B3S7   A0A195FNY3   A0A151WLJ5   F4WIS4   A0A151IWQ1   A0A195CVD1   J9K200   A0A2H8TNP7   A0A1Z5KY16   A0A2R5LFA9  

Pubmed

26354079    22118469    26227816    24438588    28004739    25315136    + More
26483478    18362917    19820115    25348373    25244985    17994087    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24495485    26108605    19859648    15632085    22936249    20920257    23761445    20966253    17510324    12364791    23537049    25401762    25474469    24508170    30249741    20798317    28648823    20075255    21347285    21719571    28528879   

EMBL

NWSH01000081    PCG79812.1    KQ461196    KPJ06495.1    KQ459601    KPI93736.1    + More
ODYU01009654    SOQ54233.1    AGBW02014319    OWR41873.1    JTDY01000385    KOB77439.1    ATLV01014586    KE524975    KFB39135.1    GEZM01066081    JAV68203.1    JXUM01062621    KQ562208    KXJ76409.1    KQ971343    EFA03526.1    GDHF01011948    JAI40366.1    GAKP01001088    JAC57864.1    DS231860    EDS39324.1    AXCM01011510    GFDL01012021    JAV23024.1    CVRI01000037    CRK93483.1    CH940654    EDW57712.1    CH933807    EDW11612.1    CM000158    EDW90382.1    GGFK01001894    MBW35215.1    AE014134    AY061330    AAF53766.1    AAL28878.1    CM000361    EDX05477.1    GAMC01012789    JAB93766.1    CH954179    EDV54688.1    CH480822    EDW55725.1    JRES01001289    KNC23911.1    CH902620    EDV31127.2    FJ821025    ACN94627.1    CH475456    EAL29379.1    CH916372    EDV98738.1    GGFK01002037    MBW35358.1    CH963920    EDW78030.1    CM002910    KMY90950.1    ADMH02001866    ETN60759.1    CP012525    ALC42865.1    OUUW01000010    SPP85523.1    APCN01003737    CH477689    EAT37251.1    AAAB01008984    EAA43377.4    GGFK01002047    MBW35368.1    CCAG010015909    GEDC01028277    JAS09021.1    GECU01028371    JAS79335.1    GECZ01024606    JAS45163.1    GECU01020558    JAS87148.1    JXJN01015380    GGFJ01001799    MBW50940.1    KB632411    ERL95230.1    APGK01032711    KB740848    ENN78675.1    AXCN02000420    GGFM01002412    MBW23163.1    GBHO01030325    JAG13279.1    GGFJ01001800    MBW50941.1    GDHF01023349    JAI28965.1    GFTR01008221    JAW08205.1    GECL01001612    JAP04512.1    UFQS01001200    UFQT01001200    SSX09671.1    SSX29461.1    KQ434890    KZC10440.1    KQ414646    KOC66531.1    ACPB03001383    GBBI01002219    JAC16493.1    KK107602    QOIP01000001    EZA48566.1    RLU26601.1    RLU26679.1    GGFJ01001802    MBW50943.1    GBYB01009397    GBYB01009399    JAG79164.1    JAG79166.1    KZ288326    PBC27988.1    GL445552    EFN89436.1    NNAY01000334    OXU29139.1    GGMS01001087    MBY70290.1    ADTU01008703    KQ976618    KYM79141.1    KQ981382    KYN42270.1    KQ982959    KYQ48716.1    GL888177    EGI65870.1    KQ980846    KYN12248.1    KQ977279    KYN04124.1    ABLF02031337    GFXV01003457    MBW15262.1    GFJQ02007216    JAV99753.1    GGLE01004060    MBY08186.1   

Proteomes

UP000218220    UP000053240    UP000053268    UP000007151    UP000037510    UP000030765    + More
UP000075880    UP000095301    UP000069940    UP000249989    UP000007266    UP000002320    UP000095300    UP000075920    UP000075883    UP000076408    UP000183832    UP000008792    UP000009192    UP000192221    UP000002282    UP000000803    UP000000304    UP000008711    UP000075885    UP000001292    UP000075900    UP000037069    UP000007801    UP000001819    UP000001070    UP000007798    UP000000673    UP000075903    UP000092553    UP000268350    UP000075882    UP000075902    UP000075840    UP000008820    UP000007062    UP000092444    UP000091820    UP000092445    UP000078200    UP000092443    UP000075881    UP000092460    UP000030742    UP000019118    UP000075886    UP000075884    UP000076502    UP000053825    UP000015103    UP000053097    UP000279307    UP000242457    UP000008237    UP000215335    UP000002358    UP000005205    UP000078540    UP000078541    UP000075809    UP000007755    UP000078492    UP000078542    UP000007819   

PRIDE

Q9VIZ3   

Pfam

PF00270   DEAD        + More
PF04408   HA2
PF00271   Helicase_C
PF07717   OB_NTP_bind
PF02949   7tm_6
PF07652   Flavi_DEAD

Interpro

IPR007502   Helicase-assoc_dom        + More
IPR002464   DNA/RNA_helicase_DEAH_CS       
IPR027417   P-loop_NTPase       
IPR001650   Helicase_C       
IPR014001   Helicase_ATP-bd       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR011709   DUF1605       
IPR004117   7tm6_olfct_rcpt       
IPR035969   Rab-GTPase_TBC_sf       
IPR011492   DEAD_Flavivir       

SUPFAM

SSF52540   SSF52540        + More
SSF47923   SSF47923       

CDD

cd00079  HELICc

ProteinModelPortal

A0A2A4K831   A0A194QNE5   A0A194PJX5   A0A2H1WMD2   A0A212EK55   A0A0L7LPV6   + More
A0A084VME1   A0A1Y1L3E3   A0A182JHN0   A0A1I8MPY7   A0A1S4FRG9   A0A182GGX3   D6WL19   A0A0K8VNA9   A0A034WT90   B0W8U5   A0A1I8QB85   A0A182WGY3   A0A182MDB8   A0A1Q3F626   A0A182YFF5   A0A1J1HZU2   B4M936   B4KKG2   A0A1W4VXM6   B4PAH4   A0A2M4A388   Q9VIZ3   B4Q9H0   W8BKG6   B3NM88   A0A182PDE2   B4I5R9   A0A182R9R0   A0A0L0BV63   B3MNP0   D0QWC8   Q29CK8   B4JPA8   A0A2M4A3Y9   B4N190   A0A0J9TR95   W5JD61   A0A182V7K8   A0A0M4EF76   A0A3B0JWR3   A0A182KUR1   A0A182UAC9   A0A2C9GS63   Q16S17   Q7PW47   A0A1S4H054   A0A2M4A3Z8   A0A1B0FNR5   A0A1A9W044   A0A1B0A523   A0A1B6C691   A0A1A9V9K0   A0A1A9XGT6   A0A182KBK4   A0A1B6HXG4   A0A1B6F5K8   A0A1B6IJQ8   A0A1B0BJF4   A0A2M4BD18   U4UY31   N6UAC1   A0A182QIP3   A0A2M3Z3U1   A0A182NIR5   A0A0A9WZW3   A0A2M4BDA3   A0A0K8URI7   A0A224X6Y1   A0A0V0G8U4   A0A336MJ25   A0A154PGY8   A0A0L7R6Z8   T1I9F2   A0A023F5P9   A0A182NF41   A0A026VYN2   A0A2M4BD63   A0A0C9R953   A0A2A3E8F4   E2B4E2   A0A232FFD3   A0A2S2PY47   K7INH6   A0A158P483   A0A195B3S7   A0A195FNY3   A0A151WLJ5   F4WIS4   A0A151IWQ1   A0A195CVD1   J9K200   A0A2H8TNP7   A0A1Z5KY16   A0A2R5LFA9  

PDB

6FF7     E-value=0,     Score=2761

KEGG

101743469    K12813 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:3.6.4.13] | (RefSeq) putative p

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0004386   GO:0005524   GO:0003676   GO:0003723   GO:0034459   GO:0005681   GO:0016887   GO:0071013   GO:0004004   GO:0000398   GO:0071011   GO:0016021   GO:0004984   GO:0005549   GO:0008026   GO:0006412   GO:0005739   GO:0006635   GO:0016507   GO:0048384  

Length:

880

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00438999999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00025

outside

1  -  880

 

 

Pi

233.799801

Theta

154.237874

Tajima's D

0.885337

CLR

0.064026

CSRT

0.626368681565922

Interpretation

Uncertain