Gene

KWMTBOMO02059  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003197

Annotation

ribosomal_protein_S18_[Bombyx_mori]

Location

Bomo_Chr4(-):11197333-11199856      View in EpiBrowser

Full name

40S ribosomal protein S18      

Location in the cell

Cytoplasmic   Reliability : 1.664 Mitochondrial   Reliability : 1.308 Nuclear   Reliability : 1.431

CDS

ATGTCGCTGGTCATTCCAGACAAATTTCAACATATTCTTCGTATCATGAATACGAACATCGATGGCAAACGCAAGGTTATGTTTGCGATGACGGCTATCAAAGGTGTTGGCCGGAGGTACTCCAACATTGTTCTCAAAAAAGCCGACATTGATCTTGACAAGCGTGCTGGCGAATGCACAGAAGAAGAGGTTGAAAAAATTATCACTATCATGTCGAATCCTAGGCAGTATAAGATACCAGACTGGTTCCTAAATAGGCAAAAGGATATTGTTGATGGTAAATACAGCCAGCTGACCTCCTCCAACTTGGATTCAAAACTCCGTGAAGATTTGGAGAGGCTCAAGAAGATTCGCGCTCACAGAGGGATGCGACATTACTGGGGCCTTCGTGTGCGTGGTCAGCACACTAAGACTACTGGCAGGAGAGGAAGAACTGTTGGTGTATCAAAGAAGAAGTAA

Protein

MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRRGRTVGVSKKK

Description

Located at the top of the head of the 40S subunit, it contacts several helices of the 18S rRNA.

Similarity

Belongs to the universal ribosomal protein uS13 family.

Keywords

Cytoplasm   Ribonucleoprotein   Ribosomal protein   RNA-binding   rRNA-binding  

Feature

chain  40S ribosomal protein S18

Uniprot

Q6F458   G0ZED6   Q5UAM4   A0A3G1T1M7   A0A2H4WW82   A0A2A4K7Q9   + More
Q6I6G6   A0A2H1VCW1   E7DZ17   D1LYK6   A0A0B5KXM5   Q962R1   I4DMA0   I4DII5   A0A0L7LPJ3   A0A1W4W667   Q6EUY3   A0A067RFN5   I3TBA9   T1RU54   A0A1B1NJ09   A0A1D1XS73   J3JUK8   Q4GXQ1   D6WLS9   A0A0J7L4M9   A0A158NTZ5   E2B252   A0A026W0R9   A2IAE0   R4WD02   A0A1B6KAN9   A0A195C7C8   A0A195FK21   A0A151WN60   A0A1B6GTC2   A0A1B6ITN8   D1M7Z8   Q6EUY1   A0A3L8DPS3   A0A2A3EMC1   V9IM24   A0A088AC74   K7J7P3   A0A232F7H8   A0A1Y1MK39   Q6EUY2   A0A158NTZ4   A0A2J7PB80   Q4GXP9   J7I4N0   A0A2P8XCS5   F2CRI3   A0A2H8U0A8   Q201X4   A0A0L7REQ2   A0A2R7VQ19   A0A2R7VS00   R4FNM6   A0A224XVL1   A0A0P4VTT8   A0A069DPK5   T1I587   A0A171B9M6   A0A0K8TPV8   A0A1B6DYD2   A0A336MWE4   A0A146L100   W8BZR9   A0A0K8VJX8   Q0PXX0   A0A034VT80   A0A0A9XA68   A0A0X8NRE0   A0A0C9QH02   A0A023F9E5   A0A0A1WPG5   A2I498   B4LPN6   B4KS29   A0A2P2HVR6   B4MRX5   A0A1L8EHH9   A0A0N7IZR1   A0A0M3QUW2   F5A6E1   A0A0A0VJF5   A0A1D2NHK5   B3MHM4   A0A0A9X6U5   A0A1B0FNA2   A0A1A9VB26   A0A0P6GIG5   A0A087V137   A0A0L0CJ07   G0Z9G6   B3NK49   Q5R288   Q5R269   Q6XHV8  

Pubmed

14668217    22651552    26227816    24845553    22516182    23537049    + More
18362917    19820115    21347285    20798317    24508170    17437641    23691247    30249741    20075255    28648823    28004739    22874750    29403074    21415278    27129103    26334808    26369729    26823975    24495485    25348373    25401762    25474469    25830018    17994087    25315136    27289101    26108605    15729003    22936249    14525923    17550304   

EMBL

AB180432    BAD26676.1    JF265014    AEL28845.1    AY769334    AAV34876.1    + More
MG992453    AXY94891.1    KY514091    AUD12122.1    NWSH01000081    PCG79803.1    AB182248    BAD23920.1    ODYU01001874    SOQ38689.1    HQ424720    ADT80664.1    GU084280    ACY95313.1    KM923787    AJG43846.1    AF400215    AK402418    BAM19040.1    AK401103    BAM17725.1    JTDY01000385    KOB77438.1    AJ783888    CAH04336.1    KK852498    KDR22651.1    JQ686952    AFK49801.1    KC569745    AGO46414.1    KT274804    ANS83639.1    GDJX01022687    JAT45249.1    APGK01032711    BT126923    KB740848    KB632411    AEE61885.1    ENN78677.1    ERL95232.1    AM048972    CAJ17207.1    KQ971343    EFA04159.1    LBMM01000647    KMQ97892.1    ADTU01026217    GL445059    EFN60227.1    KK107503    EZA49603.1    EF179454    ABM55460.1    AK417079    BAN20294.1    GEBQ01031465    JAT08512.1    KQ978143    KYM96779.1    KQ981522    KYN40701.1    KQ982926    KYQ49231.1    GECZ01004090    JAS65679.1    GECU01017418    JAS90288.1    GU120422    ACY71272.1    AJ783890    CAH04338.1    QOIP01000006    RLU21899.1    KZ288210    PBC32953.1    JR052706    AEY61762.1    AAZX01017615    NNAY01000808    OXU26409.1    GEZM01033531    JAV84226.1    AJ783889    CAH04337.1    NEVH01027196    PNF13596.1    AM048974    CAJ17208.1    JX122921    AFQ22730.1    PYGN01002979    PSN29784.1    AK354235    AK357187    BAJ85454.1    BAJ88402.1    GFXV01008162    MBW19967.1    ABLF02016217    DQ413212    AK340149    ABD72680.1    BAH70806.1    KQ414608    KOC69432.1    KK854023    PTY09622.1    PTY09621.1    GAHY01001229    JAA76281.1    GFTR01002548    JAW13878.1    GDKW01000660    JAI55935.1    GBGD01003337    JAC85552.1    ACPB03008489    GEMB01000103    JAS03008.1    GDAI01001194    JAI16409.1    GEDC01006627    JAS30671.1    UFQT01003096    SSX34556.1    GDHC01017204    JAQ01425.1    GAMC01001683    JAC04873.1    GDHF01013469    JAI38845.1    DQ673416    ABG81989.1    GAKP01013635    JAC45317.1    GBHO01027911    JAG15693.1    KC507315    AHB12438.1    GBYB01013913    JAG83680.1    GBBI01000591    JAC18121.1    GBXI01013716    JAD00576.1    EF070601    ABM55667.1    CH940648    EDW60274.1    CH933808    EDW10465.2    IACF01000080    LAB65893.1    CH963850    EDW74864.1    GFDG01000740    JAV18059.1    KT006855    ALK24314.1    CP012524    ALC41359.1    HQ414569    AEB54647.1    KM373702    AIW68599.1    LJIJ01000036    ODN04753.1    CH902619    EDV35860.1    GBHO01027910    JAG15694.1    CCAG010005595    GDIQ01043231    JAN51506.1    KL817958    KFM83326.1    JRES01000335    KNC32207.1    HQ910457    AEK48265.1    CH954179    EDV55284.1    AB162349    CM000362    CM002911    BAD72904.1    EDX07887.1    KMY95233.1    AB162351    CH480816    BAD72922.1    EDW48674.1    AY231741    AY232075    CM000158    AAR10098.1    EDW91425.1   

Proteomes

UP000218220    UP000037510    UP000192223    UP000027135    UP000019118    UP000030742    + More
UP000007266    UP000036403    UP000005205    UP000000311    UP000053097    UP000078542    UP000078541    UP000075809    UP000279307    UP000242457    UP000005203    UP000002358    UP000215335    UP000235965    UP000245037    UP000007819    UP000053825    UP000015103    UP000079169    UP000008792    UP000009192    UP000007798    UP000095301    UP000092553    UP000094527    UP000007801    UP000092444    UP000078200    UP000054359    UP000037069    UP000008711    UP000000304    UP000001292    UP000002282   

PRIDE

Q5UAM4    Q962R1   

Pfam

PF00416   Ribosomal_S13

Interpro

IPR027437   30s_Rbsml_prot_S13_C        + More
IPR010979   Ribosomal_S13-like_H2TH       
IPR018269   Ribosomal_S13_CS       
IPR001892   Ribosomal_S13       

SUPFAM

SSF46946   SSF46946       

Gene 3D

4.10.910.10    

ProteinModelPortal

Q6F458   G0ZED6   Q5UAM4   A0A3G1T1M7   A0A2H4WW82   A0A2A4K7Q9   + More
Q6I6G6   A0A2H1VCW1   E7DZ17   D1LYK6   A0A0B5KXM5   Q962R1   I4DMA0   I4DII5   A0A0L7LPJ3   A0A1W4W667   Q6EUY3   A0A067RFN5   I3TBA9   T1RU54   A0A1B1NJ09   A0A1D1XS73   J3JUK8   Q4GXQ1   D6WLS9   A0A0J7L4M9   A0A158NTZ5   E2B252   A0A026W0R9   A2IAE0   R4WD02   A0A1B6KAN9   A0A195C7C8   A0A195FK21   A0A151WN60   A0A1B6GTC2   A0A1B6ITN8   D1M7Z8   Q6EUY1   A0A3L8DPS3   A0A2A3EMC1   V9IM24   A0A088AC74   K7J7P3   A0A232F7H8   A0A1Y1MK39   Q6EUY2   A0A158NTZ4   A0A2J7PB80   Q4GXP9   J7I4N0   A0A2P8XCS5   F2CRI3   A0A2H8U0A8   Q201X4   A0A0L7REQ2   A0A2R7VQ19   A0A2R7VS00   R4FNM6   A0A224XVL1   A0A0P4VTT8   A0A069DPK5   T1I587   A0A171B9M6   A0A0K8TPV8   A0A1B6DYD2   A0A336MWE4   A0A146L100   W8BZR9   A0A0K8VJX8   Q0PXX0   A0A034VT80   A0A0A9XA68   A0A0X8NRE0   A0A0C9QH02   A0A023F9E5   A0A0A1WPG5   A2I498   B4LPN6   B4KS29   A0A2P2HVR6   B4MRX5   A0A1L8EHH9   A0A0N7IZR1   A0A0M3QUW2   F5A6E1   A0A0A0VJF5   A0A1D2NHK5   B3MHM4   A0A0A9X6U5   A0A1B0FNA2   A0A1A9VB26   A0A0P6GIG5   A0A087V137   A0A0L0CJ07   G0Z9G6   B3NK49   Q5R288   Q5R269   Q6XHV8  

PDB

4V6W     E-value=8.29369e-59,     Score=569

KEGG

692720    K02964 small subunit ribosomal protein S18e | (RefSeq) RpS18; ribosomal protein S18

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0003735   GO:0006412   GO:0003723   GO:0005840   GO:0019843   GO:0005829   GO:0005730   GO:0000228   GO:0005622   GO:0003676   GO:0005739   GO:0006635   GO:0016507   GO:0048384  

Subcellular location

Cytoplasm  

Length:

152

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00823

Exp number, first 60 AAs:

0.00823

Total prob of N-in:

0.08417

outside

1  -  152

 

 

Pi

171.226358

Theta

234.344588

Tajima's D

-0.850204

CLR

1.658404

CSRT

0.164741762911854

Interpretation

Uncertain