SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02055
Pre Gene Modal
BGIBMGA002969
Annotation
PREDICTED:_junctophilin-1_isoform_X1_[Bombyx_mori]
Location
Bomo_Chr4(+):11148177-11172299      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.723
 

Sequence

CDS
ATGGATCGAGTGGCGACAATAGGGCGGGCGGGGTGTGTACGTGGCACGGCCAGGGCGGGCGGGGTGAGGAAGACGGACGAGGGGCGGATGCGACGCGCAGTGCTCCTCGCGCAGGAACGGAGCGGTGTTCACTCGGCAGCGCGCCGCGGCGCGACATGCCCAGCTGATGTTTATTTATACCGCGAGCTCGGTGGAGGGTGCGCGCGGGAGGCCCTCCCCTCCGCGGCACCACGGCTTCGCGTGATGCAGCCGAGCGAGCTAGCCGATGCCGCGCACGCTGCTAGCGGAAACCCCCCGCAGCGCGGCCTCAACGGTGGCCGATTCGACTTTGACGATGGTGGTACATATTGTGGTAGTTGGGATGACGGCAAGGCCCATGGCCACGGAGTGTGCACTGGGCCTAAAGCCCAAGGAGCCTACGCCGGTTCTTGGAACTTCGGTTTTGAAGTATCGGGCGTCTACACCTGGCCCAGTGGGAGCACTTACGAAGGACAATGGCAGAGTGGAAAACGGCACGGATTGGGTGTCGAAAACCGCGACCGGTGGATTTATCGCGGTGAATGGACACAAGGTTCCAAAGGCCGATACGGCGTACGACAGAGCACAATTAGCAACGCCAAGTATGAAGGCACATGGGCTAACGGATTTCAAGACGGCTACGGCTCTGAAACATACGCCGATGGTGGCACATATCAAGGACAATGGATGCGAGGGTGTCGTCATGGATACGGCGTCCGTACATCAGCACCTTTCGGACTGGCGTCGCATTACCGGGCCGCGTCGCGCCATCACCGCGGCTCGATGTCTTCGCTCACGGAAGTGGGCAGCGCCTCGGATCCTTCGGAAAGGCGAACCAACCGTATGGACGACGCCCGAGGTGGTTTCGTGTTGGCGCGCCGCTCCGACCGGCCCTCGGGCAGACGCGGTTCACTTTTCGAGAACACGAAAAAGGGATTGTTTACTAGGCTCGGCAAGCCGCGCAGTGCGGGCGACTTGGACAAGCACGGCGGTGGCTCGGTTCGCTCCGGCTCGGGGGACTCGACCACCTCCTGGGTGTCCTCCGTAGAGAGCACGCACTCCGCTATGACCCATGCCTCTCAGCACACTAATTCGAACACGAGTTTTATGGTTGAGGATGAACATTTGGATGCCAATATCATAGAAACATATATGGGTGAATGGAAAAATGATAAACGTACTGGTTACGGCATCAGTGAACGTAGCGACGGTCTACGATACGAGGGTGAATGGTTCGAGAACAGAAAATACGGATACGGCGTCACAACTTTCCGCGATAACACGAAGGAAGAAGGCAAATATAAGAACAACGTTCTCATCACGAGCCAAAAACGCAAACACATGTTCCTGATGCGCTCTGCCAAGTTCAGAGAACGTGTCGACTCAGCAGTTAACGCTGCTCAACGAGCCTCAAAGATAGCGTTGCAAAAAGGGGACATTGCAATTTCCAGAACCGCTACAGCACGTGGTAAAGCCGAACAAGCGGATGCAGCCGCAGACCAAGCAAAAGAAGACTGTGATATAGCGCAAATGACTGCGAAGCAATTCGCACCAGATTTCAAACATCCTGGTTTCGACCGAATAGGATTAAGAGAAAAATACAGACAAAAGGCTTACGACGCACAAGTTGCACCACCCGTACCGCAAGAATCTGAAAAGATCTTGGACGGAAAGAGCATTCCAAATCATATCCCTCCGACGCACTCACAGCTTCCACAAACAAACGCCGTACCGAACGCAATGCCCAGAAGACTTTCTACGCAATATCCTAAAACTACTGGTAATCAACCAGTTGACCCACGACTTGCAAACAGTTCAAATTACAATTCAGATAACAGAAATCTTGGACCACCACACGACCCATACCATTCCTCTCAACAAGATTCATGGCCTACAAATTCACAGTCATATATTCCGGACACACACAAACAGTATGTACCAAATGAACAAATGAATACTTATGGTACCGGTTCTCCAGGTGTACCACCAAACCCATCTGCTCCATATCGTCAGAACAGGCAAGATTCAATATCTCAACAACAAAGTTATGATCAGAGCGGTCAACCATTTACGAATCAAGGTCGGAGATTGTCGTCAGCAGTTAGAGCCACGGCAAACCAACGACCACAACAGGATTGGAACGCTCAACCCCAACCTCAACAAGCAACAAGGCGCCAGAGCGTTCTCGGTCAACCTACGTATGATACGCAAGCTAATACCTACGTTGACGGGCGCACCGAATTTCGCTCGGGAACGGTACACTCTGAAGGTGCCTTGCTGGATAACAAGCAACCTGGACCAACAGAACCGCAAAACTATCGGCAAAACTATGACCAAGATAATAATATGTATAGACAGACAACGCAACCAGATCAAGCATATAGACAAGGAACGGTCGACAATCAAGCCTATCGTCAAACACATCCCTCTGAACAGGACGCTATCAATGGAGCACGAGATAATCGACAACCAGGAACACGTCCTTCAATCGATTACTTTGATCACTATAAAAGACCTCCAAGCCGAGACTCTAGTGTGGATCGATACGGCAGACGATCTCGACAGCCTTCGGTTGATGCTACCGCACCGAATCCAAGTTCACGTAGTGGTTCAATTGCCCCACAAACGATATCACGACCTCCGTCAAGGGCAGCTACACCAGCAGGCAACGGTCATTTAGCGTCCGGTCGTGGTTCGATTTCAAGAGCTAGTTCTAGAGAGCATCACGCATTTGAAGATTCGCTCTTACGAAAGCGAACACTCGGCCAGGAAATATCTCCTTCTCCGTACCAACCAAAAAGGACGGAAAGCTTATACGTAGCACCAAATCCTACTCCACCACCACCCATTCAACGAGCAGCAGGAGGAGGAGGAGGTCGCAAAGTGAGTAATTTTAGTATTTAA
Protein
MDRVATIGRAGCVRGTARAGGVRKTDEGRMRRAVLLAQERSGVHSAARRGATCPADVYLYRELGGGCAREALPSAAPRLRVMQPSELADAAHAASGNPPQRGLNGGRFDFDDGGTYCGSWDDGKAHGHGVCTGPKAQGAYAGSWNFGFEVSGVYTWPSGSTYEGQWQSGKRHGLGVENRDRWIYRGEWTQGSKGRYGVRQSTISNAKYEGTWANGFQDGYGSETYADGGTYQGQWMRGCRHGYGVRTSAPFGLASHYRAASRHHRGSMSSLTEVGSASDPSERRTNRMDDARGGFVLARRSDRPSGRRGSLFENTKKGLFTRLGKPRSAGDLDKHGGGSVRSGSGDSTTSWVSSVESTHSAMTHASQHTNSNTSFMVEDEHLDANIIETYMGEWKNDKRTGYGISERSDGLRYEGEWFENRKYGYGVTTFRDNTKEEGKYKNNVLITSQKRKHMFLMRSAKFRERVDSAVNAAQRASKIALQKGDIAISRTATARGKAEQADAAADQAKEDCDIAQMTAKQFAPDFKHPGFDRIGLREKYRQKAYDAQVAPPVPQESEKILDGKSIPNHIPPTHSQLPQTNAVPNAMPRRLSTQYPKTTGNQPVDPRLANSSNYNSDNRNLGPPHDPYHSSQQDSWPTNSQSYIPDTHKQYVPNEQMNTYGTGSPGVPPNPSAPYRQNRQDSISQQQSYDQSGQPFTNQGRRLSSAVRATANQRPQQDWNAQPQPQQATRRQSVLGQPTYDTQANTYVDGRTEFRSGTVHSEGALLDNKQPGPTEPQNYRQNYDQDNNMYRQTTQPDQAYRQGTVDNQAYRQTHPSEQDAINGARDNRQPGTRPSIDYFDHYKRPPSRDSSVDRYGRRSRQPSVDATAPNPSSRSGSIAPQTISRPPSRAATPAGNGHLASGRGSISRASSREHHAFEDSLLRKRTLGQEISPSPYQPKRTESLYVAPNPTPPPPIQRAAGGGGGRKVSNFSI

Summary

Uniprot
A0A2A4K6E6   A0A2A4K706   A0A194QLV4   A0A194PJY3   A0A2H1V171   A0A0L7LPR6   + More
Pubmed
26354079    26227816   
EMBL
NWSH01000081    PCG79807.1    PCG79806.1    KQ461196    KPJ06507.1    KQ459601    + More
KPI93746.1    ODYU01000205    SOQ34595.1    JTDY01000385    KOB77435.1   
Proteomes
UP000218220    UP000053240    UP000053268    UP000037510   
Pfam
PF02493   MORN        + More
PF03810   IBN_N
PF00083   Sugar_tr
PF02535   Zip
Interpro
IPR017191   Junctophilin        + More
IPR003409   MORN       
IPR016024   ARM-type_fold       
IPR021133   HEAT_type_2       
IPR005828   MFS_sugar_transport-like       
IPR020846   MFS_dom       
IPR011989   ARM-like       
IPR003689   ZIP       
IPR036259   MFS_trans_sf       
IPR001494   Importin-beta_N       
IPR040122   Importin_beta       
SUPFAM
SSF103473   SSF103473        + More
SSF48371   SSF48371       
Gene 3D
1.25.10.10    
CDD
cd06174  MFS
ProteinModelPortal
A0A2A4K6E6   A0A2A4K706   A0A194QLV4   A0A194PJY3   A0A2H1V171   A0A0L7LPR6   + More

Ontologies

KEGG
101743189    K19530 junctophilin | (RefSeq) junctophilin-1
GO
GO:0030314   GO:0016021   GO:0005623   GO:0008536   GO:0006606   GO:0046873  
PANTHER
PTHR23085   PTHR10527  

Topology

Length:
973
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00507
Exp number, first 60 AAs:
0.00058
Total prob of N-in:
0.00028
outside
1  -  973
 
 

Population Genetic Test Statistics

Pi
237.161677
Theta
176.708869
Tajima's D
0.624332
CLR
1.934125
CSRT
0.556622168891555
Interpretation
Uncertain
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