Silkworm Genome Informatics Database

Gene

KWMTBOMO02049

Annotation

PREDICTED:_uncharacterized_protein_LOC105842588_[Bombyx_mori]

Location

Bomo_Chr4(+):11070867-11072248 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.197

CDS

ATGGACGATGACGACAGGGGTGAGGGCTTCAGCTCCGCCCCTGTGTCCGCTCCCAAAATAATGGGAAAACGAAGATTGACCTCATCTGAATACGACGAAAGCCGCAAAATAAAAATGACTTTCATTAAAAATAAGCGCGGTCTTTTTAAAGACCACCATGCTCTTTATGAAGACCTTACAAAAAAAGAATACCCAGTGCTTCTTCAGTCAAGCCTCTCGCAACCAAATAACAGAGTCCCAATGGATCTGTTAAGAATAAACAAATCTTTAAAAAATGTTCAAGGGGTACAGTATGTCAAAGCTGCTGGAAACTTTTTTGCTAAAGTTTACTTTGGCTGTGCTCGGGATGCCAACGCTTTTTTATTAGATGTAAGCTTTATGGAGTTAAACAATTGGACAGCAAAAATACCTTACGATAGCATTGAGAGTCAAGGAATTATTCGAGCTCCTGTGGAATTAGATGAAGAATCTCTTTTAGTAAATTTAAAAGCTTCATGCACAATACTTGGAGTAAAAAGATTTTTCAAAAAACAAGAGAATGGAAGTGACAAGCCACTGCAAACTGTGCTGGTTACATTTTTGGCGTCTAGCCATCCTGATCACGTCACATACGAGCATATTTGGATGCCTGTTTCGGATTATATTAGACCTGTGTTACAGTGCTTCAAATGCTACAAATTCGGACATGGAAGTGGTGCCTGTAAAGCCACTCAAGTTTGCTCTATTTGTTCAGGCAATCATTTTTATAAGGAGTGCAGCACTCCCAACATCTTCAAGTGCTCCAACTGCAGTGGACCACATTCTGCAGTTTCTTACTCTTGCTCAGTAAAGGCAGCCAAGGTTGCTGAAGTTAAAAATAAGATCATCGGCAAGCAAACATCATATGCAGCCATACTAAAGACTCCTGTTATTAAGAACCCCGTGACCTCTTCTGACATACCTATATCTGCGAAGACCCCTCAAGGTAGGGCTTTAATTTCAGACATTATAAATTCAGAAATTGTCATCAGAACCATTACAAAAACTTTAATAGAATTGTTAAAGAAAAAGGATTCTAAATCCCCTTCTGGACCTATATCAACTCAATTAATTAAAGAAATGCTAGTAACAAATTTTACATCATAA

Protein

MDDDDRGEGFSSAPVSAPKIMGKRRLTSSEYDESRKIKMTFIKNKRGLFKDHHALYEDLTKKEYPVLLQSSLSQPNNRVPMDLLRINKSLKNVQGVQYVKAAGNFFAKVYFGCARDANAFLLDVSFMELNNWTAKIPYDSIESQGIIRAPVELDEESLLVNLKASCTILGVKRFFKKQENGSDKPLQTVLVTFLASSHPDHVTYEHIWMPVSDYIRPVLQCFKCYKFGHGSGACKATQVCSICSGNHFYKECSTPNIFKCSNCSGPHSAVSYSCSVKAAKVAEVKNKIIGKQTSYAAILKTPVIKNPVTSSDIPISAKTPQGRALISDIINSEIVIRTITKTLIELLKKKDSKSPSGPISTQLIKEMLVTNFTS

Uniprot

A0A0N0PAN6 A0A147AN74 A0A2I4ALH6 E2ACL4 A0A146U5P0 A0A146PWZ6 + More
A0A146SQ21 A0A2H1VEZ4 A0A146PBI8

Pubmed

26354079 20798317

EMBL

KQ458678 KPJ05494.1 GCES01006446 JAR79877.1 GL438560 EFN68824.1 + More
GCES01085809 JAR00514.1 GCES01137819 JAQ48503.1 GCES01103588 JAQ82734.1 ODYU01002213 SOQ39408.1 GCES01145089 JAQ41233.1

Proteomes

UP000053268 UP000192220 UP000000311

Pfam

PF00075   RNase_H        + More
PF00078   RVT_1
PF14529   Exo_endo_phos_2

Interpro

IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf
IPR005135   Endo/exonuclease/phosphatase
IPR002156   RNaseH_domain
IPR036397   RNaseH_sf
IPR036691   Endo/exonu/phosph_ase_sf
IPR000477   RT_dom
IPR012337   RNaseH-like_sf

SUPFAM

SSF57756   SSF57756        + More
SSF53098   SSF53098
SSF56219   SSF56219

Gene 3D

3.30.420.10 3.60.10.10

ProteinModelPortal

A0A0N0PAN6 A0A147AN74 A0A2I4ALH6 E2ACL4 A0A146U5P0 A0A146PWZ6 + More
A0A146SQ21 A0A2H1VEZ4 A0A146PBI8

KEGG

105842588 no KO assigned | (RefSeq) uncharacterized LOC105842588

GO

GO:0008270 GO:0003676 GO:0004523

Length:

374

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00498999999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00756

outside

1 - 374

Pi

351.252748

Theta

217.763684

Tajima's D

2.061346

CLR

240.254318

CSRT

0.892955352232388

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree