Silkworm Genome Informatics Database

Gene

KWMTBOMO02044

Annotation

PREDICTED:_uncharacterized_protein_LOC105392935_[Plutella_xylostella]

Location

Bomo_Chr4(-):10989694-10991419 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.837

CDS

ATGGCAAGACGACGATCAAAAAGCCAGTCCTTCGATGACGACGACAGTATTTTCGATCGACCAACGCGTGGTGGAATGTTTCACTTAACGGAGAATATCATCAGGAAGTTTGACGGCAAAGACAAAACTTATGCTGTAACAAAGTGGATACAAGATATAGAGGAAAATGGTGACATATTCGAGTGGACACCAAAGCAACGGTTATTAGTGGCTCGACGGTCATTAACCGGCACGGCAGCTTTGTGGTTAAATTCTGAAAAAACGTTTCCATGCTGGGATACTTTAAAGATAGCCATCAGTAAGGAGTTCCCTGACACCATAGACGCCAAGACTATTCACGAAATGATGAGTGCTAAAAAGAAAAAGTCAAATGAATCATGCATTGACTACATGTTTGCCATGAAAGAGCTTGGACGCCGAGGCAAAATGGCGGACTACGTGGCTATAAAATATGTTGTAGATGGCATACAAGATCAAGAAATAAATAAAATAATGCTATATGGAGTCACAACGTACGCTGAATTAAAGGAGAAATTAAAAATATACGAGATTTTGAAAGAAAAAATGAAGAAAGAACCTATTCACGGAAAAGAGCAGAAAATTACTAATACAAGAGAATGGTCATCAAAAGTTCGATGTTATAGCTGTGGAGAAAAGAGTCATAAAAGTGAAGATTGCCCGAAAAAGATGCAAGGAAAAAAGTGTTTCAACTGCAACGTGTTCGGCCATATTTCTTCACAATGTCCGGCAAAGGCGGAAGCGTCATCGGCTACGGCTAGCAGCGCGAGAACAGAGCAGCAACCGAAACGCACGTATATCGCTACGACGCAGGAGGGCGCGAACACAATTTTCGAAAATCAATCTGACGAAGTTCACAACGCTATGAATGCTGTGATTGGCTCTGCGAACAGTACGGTGCGCGACAAATGTCATAACAGTGAGGTTGACATTTTAAAAGTAAATAAAGAATGTAAAGTGTTGAAAAAAACTTTGAAATTAGTAAAATTGTGTAATAATAACGAAATTCATGCATTAATTGATACTGGTAGTGAAGTTAATTTAGTAACCATGGACTATTATGAGCAAATAGGCTCTCCGACGTGTTTTAAAAATGTAAACACAGTTCTTACCGGTTTAGGCTCATCAAAGGTAATATCAACTGAACAATTTAAAACAAACATTGAAATCGACGGCTACACGTATCGTGATATAATATTTTATGTGATTCCTAGAGACAGTATACCTATTAAAGTGATATTGGGACATGAATTTTTAAGAAATGTTATTACAGTTATGAAAGATGGTTTGGTATGGATGAAACCAAATGATTGGTTGTTTAAGGTAAATTGTTTTCCATGTTCTATTGACATTGTAGGTCATGTTATGAATGAAAATGTGAGGAATGAAGTGACTAGGTTAGTAGATGAATATCGGCCATGTCAAACTAAAGAGGCTCCCATTGAGTTGAAAATCACACTTAAAGACGACATCCCAGTGGCTCAACGACCACGACGCATCTCACCAAAAGAACAGGATGAGGTAGATAAACAGGTTAAGGAGTGGCTGGAACAAGGAGTTATTCGGAAAGGATAA

Protein

MARRRSKSQSFDDDDSIFDRPTRGGMFHLTENIIRKFDGKDKTYAVTKWIQDIEENGDIFEWTPKQRLLVARRSLTGTAALWLNSEKTFPCWDTLKIAISKEFPDTIDAKTIHEMMSAKKKKSNESCIDYMFAMKELGRRGKMADYVAIKYVVDGIQDQEINKIMLYGVTTYAELKEKLKIYEILKEKMKKEPIHGKEQKITNTREWSSKVRCYSCGEKSHKSEDCPKKMQGKKCFNCNVFGHISSQCPAKAEASSATASSARTEQQPKRTYIATTQEGANTIFENQSDEVHNAMNAVIGSANSTVRDKCHNSEVDILKVNKECKVLKKTLKLVKLCNNNEIHALIDTGSEVNLVTMDYYEQIGSPTCFKNVNTVLTGLGSSKVISTEQFKTNIEIDGYTYRDIIFYVIPRDSIPIKVILGHEFLRNVITVMKDGLVWMKPNDWLFKVNCFPCSIDIVGHVMNENVRNEVTRLVDEYRPCQTKEAPIELKITLKDDIPVAQRPRRISPKEQDEVDKQVKEWLEQGVIRKG

Uniprot

A0A2A4JH77 A0A2H1VAI8 A0A023EYH9 A0A023EZG2 A0A0J7K9X8 A0A023EY26 + More
J9JQ65 A0A1L8DIN4 A0A069DWV3 A0A232EEC1 A0A224XHR1 A0A2M4AEU2 A0A0K8U2D9 W8B0V9 A0A151IKW6 A0A0A1XFE9 J9JNX9 A0A1W7R6H1

Pubmed

25474469 26334808 28648823 24495485 25830018

EMBL

NWSH01001586 PCG70783.1 ODYU01001505 SOQ37806.1 GBBI01004550 JAC14162.1 + More
GBBI01004551 JAC14161.1 LBMM01010976 KMQ87102.1 GBBI01004477 JAC14235.1 ABLF02005846 GFDF01007768 JAV06316.1 GBGD01000341 JAC88548.1 NNAY01005459 OXU16662.1 GFTR01008753 JAW07673.1 GGFK01005990 MBW39311.1 GDHF01031400 JAI20914.1 GAMC01015907 JAB90648.1 KQ977161 KYN05238.1 GBXI01004632 JAD09660.1 ABLF02011059 GEHC01000876 JAV46769.1

Proteomes

UP000218220 UP000036403 UP000007819 UP000215335 UP000078542

Pfam

PF00098   zf-CCHC        + More
PF17921   Integrase_H2C2
PF00665   rve
PF17917   RT_RNaseH
PF00078   RVT_1
PF17919   RT_RNaseH_2
PF02037   SAP
PF00077   RVP
PF03732   Retrotrans_gag
PF09668   Asp_protease

Interpro

IPR021109   Peptidase_aspartic_dom_sf        + More
IPR036875   Znf_CCHC_sf
IPR001878   Znf_CCHC
IPR001969   Aspartic_peptidase_AS
IPR001995   Peptidase_A2_cat
IPR012337   RNaseH-like_sf
IPR001584   Integrase_cat-core
IPR041373   RT_RNaseH
IPR000477   RT_dom
IPR041588   Integrase_H2C2
IPR036397   RNaseH_sf
IPR036361   SAP_dom_sf
IPR041577   RT_RNaseH_2
IPR003034   SAP_dom
IPR018061   Retropepsins
IPR005162   Retrotrans_gag_dom
IPR019103   Peptidase_aspartic_DDI1-type

SUPFAM

SSF50630   SSF50630        + More
SSF57756   SSF57756
SSF53098   SSF53098
SSF68906   SSF68906

Gene 3D

2.40.70.10 3.30.420.10 1.10.720.30

ProteinModelPortal

A0A2A4JH77 A0A2H1VAI8 A0A023EYH9 A0A023EZG2 A0A0J7K9X8 A0A023EY26 + More
J9JQ65 A0A1L8DIN4 A0A069DWV3 A0A232EEC1 A0A224XHR1 A0A2M4AEU2 A0A0K8U2D9 W8B0V9 A0A151IKW6 A0A0A1XFE9 J9JNX9 A0A1W7R6H1

PDB

2CQF E-value=0.00111597, Score=101

KEGG

105842320 no KO assigned | (RefSeq) uncharacterized LOC105842320

GO

GO:0003676 GO:0008270 GO:0004190 GO:0015074 GO:0019752 GO:0030170 GO:0005515 GO:0016876 GO:0043039 GO:0004651 GO:0005634

Length:

530

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00523

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01597

outside

1 - 530

Pi

276.810769

Theta

199.061009

Tajima's D

1.780871

CLR

0

CSRT

0.845007749612519

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree