SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02044
Annotation
PREDICTED:_uncharacterized_protein_LOC105392935_[Plutella_xylostella]
Location in the cell
Nuclear   Reliability : 2.837
 

Sequence

CDS
ATGGCAAGACGACGATCAAAAAGCCAGTCCTTCGATGACGACGACAGTATTTTCGATCGACCAACGCGTGGTGGAATGTTTCACTTAACGGAGAATATCATCAGGAAGTTTGACGGCAAAGACAAAACTTATGCTGTAACAAAGTGGATACAAGATATAGAGGAAAATGGTGACATATTCGAGTGGACACCAAAGCAACGGTTATTAGTGGCTCGACGGTCATTAACCGGCACGGCAGCTTTGTGGTTAAATTCTGAAAAAACGTTTCCATGCTGGGATACTTTAAAGATAGCCATCAGTAAGGAGTTCCCTGACACCATAGACGCCAAGACTATTCACGAAATGATGAGTGCTAAAAAGAAAAAGTCAAATGAATCATGCATTGACTACATGTTTGCCATGAAAGAGCTTGGACGCCGAGGCAAAATGGCGGACTACGTGGCTATAAAATATGTTGTAGATGGCATACAAGATCAAGAAATAAATAAAATAATGCTATATGGAGTCACAACGTACGCTGAATTAAAGGAGAAATTAAAAATATACGAGATTTTGAAAGAAAAAATGAAGAAAGAACCTATTCACGGAAAAGAGCAGAAAATTACTAATACAAGAGAATGGTCATCAAAAGTTCGATGTTATAGCTGTGGAGAAAAGAGTCATAAAAGTGAAGATTGCCCGAAAAAGATGCAAGGAAAAAAGTGTTTCAACTGCAACGTGTTCGGCCATATTTCTTCACAATGTCCGGCAAAGGCGGAAGCGTCATCGGCTACGGCTAGCAGCGCGAGAACAGAGCAGCAACCGAAACGCACGTATATCGCTACGACGCAGGAGGGCGCGAACACAATTTTCGAAAATCAATCTGACGAAGTTCACAACGCTATGAATGCTGTGATTGGCTCTGCGAACAGTACGGTGCGCGACAAATGTCATAACAGTGAGGTTGACATTTTAAAAGTAAATAAAGAATGTAAAGTGTTGAAAAAAACTTTGAAATTAGTAAAATTGTGTAATAATAACGAAATTCATGCATTAATTGATACTGGTAGTGAAGTTAATTTAGTAACCATGGACTATTATGAGCAAATAGGCTCTCCGACGTGTTTTAAAAATGTAAACACAGTTCTTACCGGTTTAGGCTCATCAAAGGTAATATCAACTGAACAATTTAAAACAAACATTGAAATCGACGGCTACACGTATCGTGATATAATATTTTATGTGATTCCTAGAGACAGTATACCTATTAAAGTGATATTGGGACATGAATTTTTAAGAAATGTTATTACAGTTATGAAAGATGGTTTGGTATGGATGAAACCAAATGATTGGTTGTTTAAGGTAAATTGTTTTCCATGTTCTATTGACATTGTAGGTCATGTTATGAATGAAAATGTGAGGAATGAAGTGACTAGGTTAGTAGATGAATATCGGCCATGTCAAACTAAAGAGGCTCCCATTGAGTTGAAAATCACACTTAAAGACGACATCCCAGTGGCTCAACGACCACGACGCATCTCACCAAAAGAACAGGATGAGGTAGATAAACAGGTTAAGGAGTGGCTGGAACAAGGAGTTATTCGGAAAGGATAA
Protein
MARRRSKSQSFDDDDSIFDRPTRGGMFHLTENIIRKFDGKDKTYAVTKWIQDIEENGDIFEWTPKQRLLVARRSLTGTAALWLNSEKTFPCWDTLKIAISKEFPDTIDAKTIHEMMSAKKKKSNESCIDYMFAMKELGRRGKMADYVAIKYVVDGIQDQEINKIMLYGVTTYAELKEKLKIYEILKEKMKKEPIHGKEQKITNTREWSSKVRCYSCGEKSHKSEDCPKKMQGKKCFNCNVFGHISSQCPAKAEASSATASSARTEQQPKRTYIATTQEGANTIFENQSDEVHNAMNAVIGSANSTVRDKCHNSEVDILKVNKECKVLKKTLKLVKLCNNNEIHALIDTGSEVNLVTMDYYEQIGSPTCFKNVNTVLTGLGSSKVISTEQFKTNIEIDGYTYRDIIFYVIPRDSIPIKVILGHEFLRNVITVMKDGLVWMKPNDWLFKVNCFPCSIDIVGHVMNENVRNEVTRLVDEYRPCQTKEAPIELKITLKDDIPVAQRPRRISPKEQDEVDKQVKEWLEQGVIRKG

Summary

Pfam
PF00098   zf-CCHC        + More
PF17921   Integrase_H2C2
PF00665   rve
PF17917   RT_RNaseH
PF00078   RVT_1
PF17919   RT_RNaseH_2
PF02037   SAP
PF00077   RVP
PF03732   Retrotrans_gag
PF09668   Asp_protease
Interpro
IPR021109   Peptidase_aspartic_dom_sf        + More
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR001969   Aspartic_peptidase_AS       
IPR001995   Peptidase_A2_cat       
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR041373   RT_RNaseH       
IPR000477   RT_dom       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR036361   SAP_dom_sf       
IPR041577   RT_RNaseH_2       
IPR003034   SAP_dom       
IPR018061   Retropepsins       
IPR005162   Retrotrans_gag_dom       
IPR019103   Peptidase_aspartic_DDI1-type       
SUPFAM
SSF50630   SSF50630        + More
SSF57756   SSF57756       
SSF53098   SSF53098       
SSF68906   SSF68906       
Gene 3D
PDB
2CQF     E-value=0.00111597,     Score=101

Ontologies

Topology

Length:
530
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00523
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01597
outside
1  -  530
 
 

Population Genetic Test Statistics

Pi
276.810769
Theta
199.061009
Tajima's D
1.780871
CLR
0
CSRT
0.845007749612519
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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