Gene

KWMTBOMO02032

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr4(+):10659021-10660975      View in EpiBrowser

Full name

Probable RNA-directed DNA polymerase from transposon BS       + More
Probable RNA-directed DNA polymerase from transposon X-element      

Alternative Name

Reverse transcriptase

Location in the cell

Mitochondrial   Reliability : 1.195 Nuclear   Reliability : 1.697

CDS

ATGGTCAGGAACGACAGGCTCTCTGCCCGTGGTGGTGGTACCGTCATTTACTATAGAAGAGCCCTGCATTGCGTCCCGCTCGATCCTCCCGCGCTCGCTAATATCGAAGCATCAGTGTGCCGAATCTCACTGACGGGACACGCGCCGATCGTTATCGCGTCCGTTTATCTTCCACCGGATAAGATCGTTCTAAGCAGTGATATCGAGGCGCTGCTCGGTATGGGGAGCTCTGTCATTCTGGCGGGCGACCTAAATTGTAAACACATCAGGTGGAACTCACACACCACAACCCCGAATGGCAGGCGGCTTGACGCGTTAGTCGATGATCTCGCCTTCGATATCGTCGCTCCGCTAACCCCGACTCACTACCCGCTAAATATCGCGCATCGCCCGGATATACTCGACATAGCGTTATTAAAAAACGTAACTCTGCGCTTACACTCGATCGAAGTAGTTTCAGAGTTAGATTCAGACCACCGTCCCGTCGTTATGAAGCTCGGTCGCGCTCTCGATTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGGCATCAGCCTGGCTGAATCTGATCCACCATCGCTCCCGTTTAACCCGGACTCTATCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCTTAACGTCACACATCACTTCGACATTAGATAGGTCATCGAAACAAGTTGTAGCGGAGGACTTCCTTCACCGCTTCAAATTGTCCGACGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATACGCGCCTACGACAGGTATCCTACCGCGGAAAATCGTATTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCTTCCCAAAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTAGTAACTATGCCCCCCCTCGTAGGCCCCTCAGGCCGACTCGCGGCGTTCGATGATGACGAAAAAGCAGAGCTGCTGGCCGATACATTGCAAACCCAGTGCACGCCCAGCACTCAAGCCGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGTAGAGCCTCCTTGCCACCATCGGATGCGTTACCACCCGTCACCCCGATAGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCGACGGTATATCTAACCGCGTTATTAAGCTTCTACCCGTCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCCGGTAAACCAAAAAATCATCCGACGAGCTACCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTCATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAATGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGACCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTCTCACCCCTCCTATTTAGCTTATTCGTCAACGATATTCCCCGGTCGCCGCCGACCCATTTAG

Protein

MVRNDRLSARGGGTVIYYRRALHCVPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDILDIALLKNVTLRLHSIEVVSELDSDHRPVVMKLGRALDSVPVTRTVVDWHTLGISLAESDPPSLPFNPDSIPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQAVDPVHVELVDSEVERRASLPPSDALPPVTPIEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNVSCSSYGTSCRTALFDIESREPAPPHDLSQLESRKALSSHPSYLAYSSTIFPGRRRPI

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Miscellaneous

At least 30 copies of X-element are present in the genome and some elements are polymorphic between different strains.

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  Probable RNA-directed DNA polymerase from transposon BS

Uniprot

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139W8G9   V5GNJ2   K7IN67   A0A2S2QEE0   A0A139WA11   A0A023EYS8   X1WVL6   A0A2S2PEZ9   A0A1Y1K0C8   A0A2S2PPK8   J9LC21   X1WLB2   X1WNI2   V5GNF3   A0A2S2PJ52   A0A087THU2   A0A224XB44   A0A1B6C2V8   A0A224X6Q4   A0A2S2NJB5   J9KLB1   X1WKS2   A0A1B6MIM7   A0A087UCW3   A0A2S2N6Q7   J9M522   A0A2J7R7D0   A0A087U3K8   A0A2S2NPT6   A0A224X6S1   A0A2S2P6S3   J9MAC6   A0A2S2NCK2   A0A224X6T4   A0A1Y1KFT3   X1WZH0   A0A224XF24   A0A087T3W0   A0A2S2PA10   A0A1Y1KFR3   A0A1Y1LKN6   A0A2S2Q2R8   A0A2S2PJG2   A0A224X6W2   Q95SX7   A0A2S2Q383   A0A2H8TF37   A0A2S2NH02   A0A0J7K503   A0A224X6U5   J9KPF1   A0A224XI99   A0A2M4CV52   A0A2M4CV42   A0A2J7QY69   A0A2J7PBY3   A0A2J7QR37   A0A2S2QDN9   A0A2J7RE85   A0A0H3UA66   A0A2J7PU96   J9JS95   A0A2H8TKI9   A0A2A4IUM2   A0A224X7Z3   A0A2J7PP17   J9LFC9   A0A224XJI0   J9LYS0   A0A2S2N814   A0A232ENU1   J9LBF1   X1WQI9   A0A2S2P7B2   A0A2J7Q0S7   Q9NBX4   X1WQ25   A0A1Y1MT28   A0A023EZE6   A0A2J7RMG0   A0A2S2NPG3   A0A2S2P3X8   J9M0H4   A0A224XIB0   X1X0M4   A0A2J7PQB5   A0A2S2R9D4   J9LK81   A0A2S2NGV8   A0A0V0G5B6   X1WXE6   A0A224X746  

EC Number

2.7.7.49

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
20075255    25474469    7753626    12537569    26812285    28648823    11405632   

EMBL

U07847    AAA17752.1    AB055391    BAB21761.1    AB018558    BAA76304.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    KQ973342    KXZ75569.1    GALX01005299    JAB63167.1    GGMS01006359    MBY75562.1    KQ971729    KYB24751.1    GBBI01004395    JAC14317.1    ABLF02042385    GGMR01015412    MBY28031.1    GEZM01099921    GEZM01099920    GEZM01099918    GEZM01099906    JAV53125.1    GGMR01018716    MBY31335.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    ABLF02042518    ABLF02057746    ABLF02008153    ABLF02008462    ABLF02008464    GALX01005359    JAB63107.1    GGMR01016297    MBY28916.1    KK115285    KFM64681.1    GFTR01008262    JAW08164.1    GEDC01029594    JAS07704.1    GFTR01008279    JAW08147.1    GGMR01004661    MBY17280.1    ABLF02040174    ABLF02040183    ABLF02055266    ABLF02005245    ABLF02013477    ABLF02047385    ABLF02066435    GEBQ01004157    JAT35820.1    KK119261    KFM75202.1    GGMR01000226    MBY12845.1    ABLF02024246    NEVH01006736    PNF36716.1    KK118005    KFM71947.1    GGMR01006581    MBY19200.1    GFTR01008271    JAW08155.1    GGMR01012443    MBY25062.1    ABLF02007779    ABLF02007782    ABLF02050375    GGMR01002322    MBY14941.1    GFTR01008261    JAW08165.1    GEZM01084970    JAV60359.1    ABLF02034467    GFTR01008038    JAW08388.1    KK113281    KFM59799.1    GGMR01013409    MBY26028.1    GEZM01084969    JAV60363.1    GEZM01053022    JAV74219.1    GGMS01002786    MBY71989.1    GGMR01016905    MBY29524.1    GFTR01008260    JAW08166.1    AY060438    AAL25477.1    GGMS01002992    MBY72195.1    GFXV01000908    MBW12713.1    GGMR01003864    MBY16483.1    LBMM01014024    KMQ85369.1    GFTR01008251    JAW08175.1    ABLF02041767    GFTR01008256    JAW08170.1    GGFL01004957    MBW69135.1    GGFL01005012    MBW69190.1    NEVH01009134    PNF33528.1    NEVH01027074    PNF13841.1    NEVH01011985    PNF31054.1    GGMS01006655    MBY75858.1    NEVH01005277    PNF39135.1    KF280391    AIE77315.1    NEVH01021205    PNF19912.1    ABLF02028535    ABLF02028545    GFXV01002840    MBW14645.1    NWSH01007753    PCG62823.1    GFTR01007929    JAW08497.1    NEVH01023280    PNF18085.1    ABLF02023911    GFTR01008257    JAW08169.1    ABLF02041861    GGMR01000676    MBY13295.1    NNAY01003095    OXU19992.1    ABLF02012739    ABLF02012741    ABLF02022418    GGMR01012676    MBY25295.1    NEVH01019963    PNF22185.1    AF237761    AAF81411.1    ABLF02013806    ABLF02016612    GEZM01021881    JAV88842.1    GBBI01004571    JAC14141.1    NEVH01002556    PNF42024.1    GGMR01006408    MBY19027.1    GGMR01011511    MBY24130.1    ABLF02034460    GFTR01008246    JAW08180.1    ABLF02065839    NEVH01022639    PNF18527.1    GGMS01017365    MBY86568.1    ABLF02023551    ABLF02023561    GGMR01003407    MBY16026.1    GECL01003538    JAP02586.1    ABLF02016634    GFTR01008151    JAW08275.1   

Proteomes

UP000053268    UP000007266    UP000002358    UP000007819    UP000054359    UP000235965    + More
UP000036403    UP000218220    UP000215335   

PRIDE

Q93137    Q9BPQ0    Q9XXW0    Q95SX7    Q9NBX4   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF07727   RVT_2
PF04937   DUF659
PF10551   MULE

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR013103   RVT_2       
IPR037220   BED_dom       
IPR012337   RNaseH-like_sf       
IPR007021   DUF659       
IPR036397   RNaseH_sf       
IPR013083   Znf_RING/FYVE/PHD       
IPR018289   MULE_transposase_dom       

SUPFAM

SSF56219   SSF56219        + More
SSF140996   SSF140996       
SSF53098   SSF53098       

Gene 3D

3.60.10.10     3.30.420.10     3.30.40.10    

ProteinModelPortal

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139W8G9   V5GNJ2   K7IN67   A0A2S2QEE0   A0A139WA11   A0A023EYS8   X1WVL6   A0A2S2PEZ9   A0A1Y1K0C8   A0A2S2PPK8   J9LC21   X1WLB2   X1WNI2   V5GNF3   A0A2S2PJ52   A0A087THU2   A0A224XB44   A0A1B6C2V8   A0A224X6Q4   A0A2S2NJB5   J9KLB1   X1WKS2   A0A1B6MIM7   A0A087UCW3   A0A2S2N6Q7   J9M522   A0A2J7R7D0   A0A087U3K8   A0A2S2NPT6   A0A224X6S1   A0A2S2P6S3   J9MAC6   A0A2S2NCK2   A0A224X6T4   A0A1Y1KFT3   X1WZH0   A0A224XF24   A0A087T3W0   A0A2S2PA10   A0A1Y1KFR3   A0A1Y1LKN6   A0A2S2Q2R8   A0A2S2PJG2   A0A224X6W2   Q95SX7   A0A2S2Q383   A0A2H8TF37   A0A2S2NH02   A0A0J7K503   A0A224X6U5   J9KPF1   A0A224XI99   A0A2M4CV52   A0A2M4CV42   A0A2J7QY69   A0A2J7PBY3   A0A2J7QR37   A0A2S2QDN9   A0A2J7RE85   A0A0H3UA66   A0A2J7PU96   J9JS95   A0A2H8TKI9   A0A2A4IUM2   A0A224X7Z3   A0A2J7PP17   J9LFC9   A0A224XJI0   J9LYS0   A0A2S2N814   A0A232ENU1   J9LBF1   X1WQI9   A0A2S2P7B2   A0A2J7Q0S7   Q9NBX4   X1WQ25   A0A1Y1MT28   A0A023EZE6   A0A2J7RMG0   A0A2S2NPG3   A0A2S2P3X8   J9M0H4   A0A224XIB0   X1X0M4   A0A2J7PQB5   A0A2S2R9D4   J9LK81   A0A2S2NGV8   A0A0V0G5B6   X1WXE6   A0A224X746  

KEGG

105842617    no KO assigned | (RefSeq) uncharacterized LOC105842617

GO

GO:0003964   GO:0004519   GO:0016021   GO:0006313   GO:0003676  

Length:

604

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

5.29073999999999

Exp number, first 60 AAs:

0.05473

Total prob of N-in:

0.03063

outside

1  -  604

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0.000027

CSRT

0

Interpretation

Uncertain