SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02030
Pre Gene Modal
BGIBMGA003208
Annotation
PREDICTED:_LIM/homeobox_protein_Lhx3_isoform_X5_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 1.996 Nuclear   Reliability : 1.938
 

Sequence

CDS
ATGCGAGGGGTAAGAGCAAAAGAAAAGCGTTTGAAGAAAGACGCCGGTCGCACGAGATGGTCCCAATACTTCAGGTCGATGAAAAGCGGAGGTGGGTCACCGAGACACGATCGACTACTAGACAAGGACGAACTAAAGATTGATTTGGATTCGTTCAGTCATCACGATTTGAGTAACGATAGCTACAGTACAGTAGCGCTCGGTGCTGAAGAAGGGTCCCCAGCCGGTGGCGGCGGGGCAGGCGCGGCGAGTGCTCGCTTCTCTGCGACGCCGCCATATTTACGAGGGCATTCTCCACCGCATCCCCACTACCATTACCCACCAGATCACCTCGTTTATACCAACATCGGTAAGTTTGTATTTATAAATACATATTTAATCATTCGACTTAAAAGAGACTTCAAGGTTTGA
Protein
MRGVRAKEKRLKKDAGRTRWSQYFRSMKSGGGSPRHDRLLDKDELKIDLDSFSHHDLSNDSYSTVALGAEEGSPAGGGGAGAASARFSATPPYLRGHSPPHPHYHYPPDHLVYTNIGKFVFINTYLIIRLKRDFKV

Summary

Pfam
PF00046   Homeodomain        + More
PF00412   LIM
Interpro
IPR001781   Znf_LIM        + More
IPR001356   Homeobox_dom       
IPR017970   Homeobox_CS       
IPR009057   Homeobox-like_sf       
SUPFAM
SSF46689   SSF46689       

Ontologies

Topology

Subcellular location
Nucleus  
Length:
136
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
3.09419
Exp number, first 60 AAs:
0
Total prob of N-in:
0.74154
inside
1  -  136
 
 

Population Genetic Test Statistics

Pi
3.7405
Theta
4.864032
Tajima's D
-0.331873
CLR
195.23495
CSRT
0.288885555722214
Interpretation
Uncertain
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