SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02019
Annotation
transposase_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 2.391 Nuclear   Reliability : 1.845
 

Sequence

CDS
ATGGAGTGGGGTGATAAAGAGAACCGAATCGCTGTGATTGCATTACACAAAGTAGGTATGGAGCCAAATGCAATTTTTAAAACTCTCCATACGCTTGGTATTAGTAACATGTTTGTGTACCGGGCTATTAATAGGTGCAATGAGACCTCCTCTGTTTGTGACAGAAAAAGATCTGGTCGTCCACGTAGTGTTCGTACGAAAAAGGTGGTCAAAGCAGTAAGGGAAAGAATTCAAAGAAATCCTGTCCGGAAGCAAAAGATTTTATCTCGGGAGATGAAGATAGCACCTAGAACCATGTCGCGTATTTTAAAAGATGACTTAGGACTTGCAGCCTATAAGAGACGTACTGGTCATTTCTTAACTGATAATTTAAAAGAGAATAGGGTGATAAAATCGAAACAACTACTGAAGCGGTACGCAAAGGGAGGTCATAGAAAAATTTTGTTTACGGATGACAAAATTTTTACAATTGAGCAACATTTTAACAAACAAAATGACCGTATTTATGCTCAAAGCTCTAAAGAAGCTTCCCAATTAGTCGACAGAGTGCAACGTGGGCACTATCCGACTTCAGTGATGGTTTGGTGGGGTGTTAGCTATGAAGGAGTGACCGGGCCATACTTTTGTGAAAAAGGTATCAAAACATTGGCACAAGTGTATCAAGGTACCATTCTTGAGAAGGTAGTGAAGCCCCTTAACAACACCATGTTCAATAATCAAGAATGGTCCTTCCAGCAAGACTCTGCGCCAGGTCGTAAAGCTCGGTCTACGCAGTCTTGGTTGGAAACGAAAGTTTTGGACTGCATCAGAGCTGAAGACTGGCCGTCGTCTAGTCCCGATCTTAATCCGCTGGATTATGATTTATGGTCAGCTTTAGAGAGCACGGCTTGCTCTAAGCGCCATGATAATTTGGAGTCCCTAAAACAATCCGTACGATTGGCAGTGAAAATTTTTCCCATGGAAAGAGTGCGTGCTTCTATTGATAACTGGCCTCAACGTTTAAAGGACTGTATTGCAGCCAATGGAGACCACTTCGAATAA
Protein
MEWGDKENRIAVIALHKVGMEPNAIFKTLHTLGISNMFVYRAINRCNETSSVCDRKRSGRPRSVRTKKVVKAVRERIQRNPVRKQKILSREMKIAPRTMSRILKDDLGLAAYKRRTGHFLTDNLKENRVIKSKQLLKRYAKGGHRKILFTDDKIFTIEQHFNKQNDRIYAQSSKEASQLVDRVQRGHYPTSVMVWWGVSYEGVTGPYFCEKGIKTLAQVYQGTILEKVVKPLNNTMFNNQEWSFQQDSAPGRKARSTQSWLETKVLDCIRAEDWPSSSPDLNPLDYDLWSALESTACSKRHDNLESLKQSVRLAVKIFPMERVRASIDNWPQRLKDCIAANGDHFE

Summary

EMBL
U47917    AAB47739.1    JF779677    AEO90418.1    AF461149    AAN06610.1    + More
AB363028    BAG15927.1    AB363006    AB363010    AB363014    BAG15923.1    BAG15924.1    AB363018    BAG15926.1    AB473770    BAH20555.1    LNIX01000030    OXA41211.1    UYSL01019905    VDL71189.1    JARK01000255    EYC39473.1    KX931010    APL98300.1    DS268612    EFO94085.1    PDUG01000005    PIC23776.1    DS268508    EFO83264.1    DS268673    EFO98001.1    DS268421    EFO88618.1    DS268466    EFP06959.1    JARK01001411    EYC06502.1    DS268525    EFO85497.1    CAVP010059404    CDL95787.1    DS268492    EFP11689.1    JARK01001337    EYC34439.1    PIC28734.1    DS268747    EFP00909.1    PDUG01000001    PIC51673.1    PDUG01000006    PIC20538.1    PDUG01000012    PIC13506.1    DS268679    EFO98285.1    JARK01001345    EYC27589.1    JARK01000176    EYC41234.1    DS268428    EFO94379.1    DS268545    EFO88382.1    JOJR01000015    RCN51257.1    JOJR01000583    RCN36166.1    JARK01000059    EYC44525.1    PIC29926.1    UYSL01020440    VDL74616.1    JARK01001658    EYB84158.1    JARK01001601    EYB87313.1    UZAH01029309    VDP05368.1    PDUG01000004    PIC32571.1    UZAH01027257    VDO90094.1    KN728607    KIH63514.1    DS268606    EFO93488.1    PIC32570.1    KA646003    AFP60632.1    HE601047    HE600964    CAS00660.1    CAS01013.1    UYSL01019770    VDL69590.1    HE601507    CAR99239.1    HE601437    CAR99651.1    DS268539    EFO88027.1    DS268565    EFO90304.1    PIC53815.1    PIC24955.1    DS269417    EFO83229.1    LFYR01002220    KMZ56176.1    HE600955    CAP35122.1    HE600938    CAR99786.1    CAS00634.1   
Pfam
PF13358   DDE_3        + More
PF00292   PAX
PF00250   Forkhead
PF13936   HTH_38
Interpro
IPR009057   Homeobox-like_sf        + More
IPR036388   WH-like_DNA-bd_sf       
IPR038717   Tc1-like_DDE_dom       
IPR001523   Paired_dom       
IPR036390   WH_DNA-bd_sf       
IPR001766   Fork_head_dom       
IPR030456   TF_fork_head_CS_2       
IPR036906   ATPase_V1_fsu_sf       
IPR025246   IS30-like_HTH       
IPR000792   Tscrpt_reg_LuxR_C       
SUPFAM
SSF46689   SSF46689        + More
SSF46785   SSF46785       
Gene 3D
PDB
5HOO     E-value=2.11268e-09,     Score=148

Ontologies

Topology

Subcellular location
Nucleus  
Length:
346
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.10277
Exp number, first 60 AAs:
0.09085
Total prob of N-in:
0.03697
outside
1  -  346
 
 

Population Genetic Test Statistics

Pi
81.448024
Theta
83.008054
Tajima's D
-0.272533
CLR
0.002398
CSRT
0.297285135743213
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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