SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02016
Pre Gene Modal
BGIBMGA002948
Annotation
similar_to_CG12236?_partial_[Papilio_xuthus]
Location in the cell
Nuclear   Reliability : 2.417
 

Sequence

CDS
ATGAATAATGCACCGCAGTTTTCTTTGCGGTGGAACAATTATGTGTCACACGTAACTGAAGCTTTTAACGCTCTGCGATTTGAGAATGATTTGGTGGACGTGACATTATGTTGCGATGGTGGTAAAATTAAAGCTCACAGAATGTTGTTATCAGCCTGTAGCAATTATTTTAGGCAAATATTCAAAGAAAATCCTTGCCAGCACCCTGTTATTATATTCAGAAACTTTAAATACGAGGACCTAAATGCGATTATCAACTTCATGTATCATGGTGAAGTGAACATATTTCAAGAACAATTGGAATCATTTCTTATTACAGCTGAACTTTTAGAAGTGAAAGGTCTGACCGATAATATAGAAGAAGATTCGGCTAAGTCGCAAATAAGATTAAGTGAGAATACTTCATTAGACCTAAGCTCTAAATCAAGTAAATATGAGGATATTGCACCTGTGCAATCAGATGAGCCAATTAATTTAGCACCTGTTCAAAGTAATAGAGATGAGAACATTCCACAAGTATGTCCAGTAAACAATGTATCTGAACAAGAAAATGTGAAGAAATGCAAGTGGATCCCCAGACAAGCACAGCTGCTCCTGAAGATTTATCAGATAAAAATAATCCTGAGTCTGATCTTGCAAAATTTCGATGCCAGTTGTGTCCGAAAGGTTTCAAACATCCTACATCATTGA
Protein
MNNAPQFSLRWNNYVSHVTEAFNALRFENDLVDVTLCCDGGKIKAHRMLLSACSNYFRQIFKENPCQHPVIIFRNFKYEDLNAIINFMYHGEVNIFQEQLESFLITAELLEVKGLTDNIEEDSAKSQIRLSENTSLDLSSKSSKYEDIAPVQSDEPINLAPVQSNRDENIPQVCPVNNVSEQENVKKCKWIPRQAQLLLKIYQIKIILSLILQNFDASCVRKVSNILHH

Summary

Pfam
PF00651   BTB        + More
PF00096   zf-C2H2
PF09237   GAGA
Interpro
IPR013087   Znf_C2H2_type        + More
IPR000210   BTB/POZ_dom       
IPR011333   SKP1/BTB/POZ_sf       
IPR036236   Znf_C2H2_sf       
IPR015318   Znf_GAGA-bd_fac       
SUPFAM
SSF54695   SSF54695        + More
SSF57667   SSF57667       
PDB
3M52     E-value=2.87098e-07,     Score=128

Ontologies

Topology

Length:
229
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.08403
Exp number, first 60 AAs:
0.00019
Total prob of N-in:
0.05489
outside
1  -  229
 
 

Population Genetic Test Statistics

Pi
242.740032
Theta
196.563081
Tajima's D
0.827947
CLR
0
CSRT
0.607969601519924
Interpretation
Uncertain
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