Gene

KWMTBOMO02006  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013567

Annotation

ribosomal_protein_L3_[Bombyx_mori]

Location

Bomo_Chr4(+):9808363-9812757      View in EpiBrowser

Full name

60S ribosomal protein L3      

Location in the cell

Cytoplasmic   Reliability : 4.408

CDS

ATGTCGCACAGAAAATTTTCAGCACCCCGTCATGGGTCTATGGGATTCTATCCCAAAAAGAGGTCCCGTCGTCATCGTGGTAAGGTCAAGGCGTTCCCGAAAGACGACCCTAGCAAACCTGTTCATTTGACTGCTTTTATCGGTTATAAGGCCGGTATGACCCACGTGGTTAGAGAACCTGACCGTCCCGGTTCAAAAATCAACAAGAAAGAGATCGTGGAGGCTGTCACCATCATCGAGACTCCTCCGATGGTTTGTGTCGGTGTTGTTGGATACATTGAGACCCCTCATGGACTACGCGCTCTGTTGACTGTCTGGGCGGAGCATATGTCTGAAGACTGTCGACGTCGCTTCTACAAAAACTGGTACAAATGCAAGAAGAAGGCTTTCACTAAAGCCAGTAAGAAATGGCAGGATGAGCTTGGACGCAAATCAATAGAAAAAGATTTCAAGAAGATGATCCGCTACTGTAGTGTTGTAAGAGTCATTGCCCACACTCAAATGAAGCTGTTAAAACAGCGACAAAAGAAGGCTCACATTATGGAAATCCAACTTAACGGTGGTACCATCGAGGACAAAGTGAAATGGGCCAGAGAACATCTGGAGAAACCTATCCCTGTCGATTCTGTGTTTGCCCAAGATGAAATGATTGACTGCATTGGTGTCACCAAGGGCAAAGGATACAAAGGTGTCACTTCTCGTTGGCACACAAAGAAGCTACCCCGTAAGACACACAAGGGTCTTAGGAAAGTTGCCTGCATTGGAGCTTGGCATCCTTCTAGGGTGTCGTTCACTGTAGCTCGTGCTGGTCAGAAAGGTTATCATCACCGTACTGAAATGAACAAGAAAATCTATCGTATTGGACAAGGAATCCACAAAAAGGATGGCAAAGTTATTAAAAACAATGCATCTACTGAGTATGACCTGTCTGAGAAATCCATTACACCGATGGGAGGTTTCCCCCATTATGGTGAAGTAAACAACGACTTTGTGATGATCAAGGGTTGCTGCATGGGACCTAAAAAGCGTATCATTACTCTTAGAAAGTCTCTGCGTGTGCATACAAAGAGGGCTGCACTAGAAAAGATCAACCTCAAATTCATTGACACCTCGTCCAAGTTCGGTCATGGTCGATTCCAAACGCCGGCTGACAAGGCTGCATTCATGGGTACACTCAAGAAGGATCGTATTCGCGAAGAAGCTGCGGCTACCACAACCCCAGCGGCTGCTGCGCAGCCTTAA

Protein

MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKCKKKAFTKASKKWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREEAAATTTPAAAAQP

Similarity

Belongs to the universal ribosomal protein uL3 family.

Keywords

3D-structure   Alternative splicing   Complete proteome   Cytoplasm   Reference proteome   Ribonucleoprotein   Ribosomal protein  

Feature

chain  60S ribosomal protein L3
splice variant  In isoform G.

Uniprot

Q5UAT8   Q8WQI9   G0ZEG8   Q2V0J0   A0A2A4K092   D1LYJ0   + More
E7DZ49   S4P8C1   I4DMP7   H9JVK4   G9D589   G9D595   A0A3G1T1A1   A0A194RGR0   A0A194PLA9   A0A212FBE7   Q4GXN6   V9IJK4   K7IRB4   D6WZ30   F4WA35   A0A026W1W9   A0A348G691   Q56FI0   A0A151JUV5   A0A1W4X2D9   A0A291L1Q1   A0A151I5V1   A0A151XH09   A0A195DL51   A0A2A3ECB2   A0A1B6E4T1   A0A1B6HZN0   A0A3L8DJN5   A0A154PJ41   A0A1B6M3M4   A0A0C9PMY3   A0A0L7LVS9   J3JTQ5   A0A161MTE3   A0A224XQT0   A0A023FAH8   A0A069DTW2   A0A1Y1LPK8   R4G8A6   N6U032   A0A109V3B6   D1M828   T1I4P1   V5I9H4   E0VST1   A0A151IG31   A0A146KMU3   A0A0A9VZ92   A0A0N0BKY0   A0A158P1B1   E2AWW1   A0A2P8ZKY5   A0A2R7VNT8   A0A2J7RP48   E2BMC7   R4WMW2   A0A0J7L6Z4   A2I419   B3NZH5   A0A026W7G7   A0A0K8TPG0   A0A1A9WFP0   A0A1B6FJU3   A0A1W4ULZ1   B4QU67   A0A3B0KCH9   B4GLH0   B4PLI8   O16797   C6SUV6   T1PHG9   A0A1D1YTM4   A0A1L8DS24   A0A1L8EHJ6   A0A1I8N656   A0A1A9XBD5   A0A1B0AZE2   A0A0M4EM74   B3LZ56   A0A1L8EH93   A0A240SX71   D3TRR8   A0A1L8DSC1   A0A1I8P770   B4NIH6   A0A0A1XQW6   W8C6G0   A0A1W7R9R0   B4JUV8   B4LZI6   A0A034WFM3   A0A2H8TV14   A0A2I9LPL7   B4KD01  

Pubmed

14668217    16360951    23622113    22651552    19121390    21967427    + More
26354079    22118469    20075255    18362917    19820115    21719571    24508170    28964897    30249741    26227816    22516182    25474469    26334808    28004739    23537049    20566863    26823975    25401762    21347285    20798317    29403074    23691247    17994087    26369729    17550304    9661671    10731132    12537572    23636399    25315136    20353571    25830018    24495485    25348373    29248469   

EMBL

AY769270    AAV34812.1    AY072287    ODYU01012043    AAL62468.1    SOQ58134.1    + More
JF265046    AEL28877.1    AB238911    BAE66653.1    NWSH01000331    PCG77338.1    GU084264    ACY95297.1    HQ424752    ADT80696.1    GAIX01006006    JAA86554.1    AK402565    BAM19187.1    BABH01039000    JF777492    AEU11837.1    JF777498    AEU11843.1    MG846915    AXY94767.1    KQ460207    KPJ16629.1    KQ459601    KPI93783.1    AGBW02009346    OWR51049.1    AM048987    CAJ17226.1    JR050333    AEY61240.1    KQ971363    EFA07826.1    GL888037    EGI68965.1    KK107503    EZA49571.1    FX985633    BBF97964.1    AY961519    AY961520    AAX62422.1    KQ981745    KYN36188.1    KY809854    ATI09803.1    KQ976402    KYM92278.1    KQ982138    KYQ59689.1    KQ980762    KYN13567.1    KZ288288    PBC29330.1    GEDC01004367    JAS32931.1    GECU01027583    JAS80123.1    QOIP01000007    RLU20373.1    KQ434931    KZC11842.1    GEBQ01009446    JAT30531.1    GBYB01002518    JAG72285.1    JTDY01000032    KOB79291.1    BT126612    AEE61576.1    GEMB01000164    JAS02949.1    GFTR01005923    JAW10503.1    GBBI01000698    JAC18014.1    GBGD01001678    JAC87211.1    GEZM01055813    JAV72927.1    GAHY01001307    JAA76203.1    APGK01047787    KB741089    KB632382    ENN73956.1    ERL94185.1    KC507325    AHB12448.1    GU120452    ACY71302.1    ACPB03014603    ACPB03014604    GALX01002930    JAB65536.1    DS235756    EEB16437.1    KQ977743    KYN00176.1    GDHC01022007    JAP96621.1    GBHO01042112    JAG01492.1    KQ435689    KOX81234.1    ADTU01006178    ADTU01006179    GL443425    EFN62081.1    PYGN01000026    PSN57166.1    KK854004    PTY09039.1    NEVH01002141    PNF42598.1    GL449185    EFN83156.1    AK416966    BAN20181.1    LBMM01000407    KMQ98436.1    EF070522    ABM55588.1    CH954181    EDV49548.1    KK107364    EZA51938.1    GDAI01001326    JAI16277.1    GECZ01019332    JAS50437.1    CM000364    EDX13398.1    OUUW01000007    SPP83416.1    CH479185    EDW38394.1    CM000160    EDW96895.1    AF016835    AE014297    BT011339    BT088948    ACT79354.1    KA647338    AFP61967.1    GDJX01009938    JAT57998.1    GFDF01004811    JAV09273.1    GFDG01000589    JAV18210.1    JXJN01006255    CP012526    ALC46515.1    CH902617    EDV42983.1    GFDG01000722    JAV18077.1    CCAG010006284    EZ424120    ADD20396.1    GFDF01004810    JAV09274.1    CH964272    EDW84799.1    GBXI01001022    JAD13270.1    GAMC01004279    JAC02277.1    GFAH01000513    JAV47876.1    CH916374    EDV91278.1    CH940650    EDW67125.1    GAKP01005845    JAC53107.1    GFXV01006242    MBW18047.1    GFWZ01000342    MBW20332.1    CH933806    EDW13771.1   

Proteomes

UP000218220    UP000005204    UP000053240    UP000053268    UP000007151    UP000002358    + More
UP000007266    UP000007755    UP000053097    UP000078541    UP000192223    UP000078540    UP000075809    UP000078492    UP000242457    UP000279307    UP000076502    UP000037510    UP000019118    UP000030742    UP000015103    UP000009046    UP000078542    UP000053105    UP000005205    UP000000311    UP000245037    UP000235965    UP000008237    UP000036403    UP000008711    UP000091820    UP000192221    UP000000304    UP000268350    UP000008744    UP000002282    UP000000803    UP000095301    UP000092443    UP000092460    UP000092553    UP000007801    UP000092445    UP000092444    UP000095300    UP000007798    UP000001070    UP000008792    UP000009192   

PRIDE

Q5UAT8    H9JVK4    O16797    C6SUV6   

Pfam

PF00297   Ribosomal_L3

Interpro

IPR019926   Ribosomal_L3_CS        + More
IPR000597   Ribosomal_L3       
IPR009000   Transl_B-barrel_sf       

SUPFAM

SSF50447   SSF50447       

ProteinModelPortal

Q5UAT8   Q8WQI9   G0ZEG8   Q2V0J0   A0A2A4K092   D1LYJ0   + More
E7DZ49   S4P8C1   I4DMP7   H9JVK4   G9D589   G9D595   A0A3G1T1A1   A0A194RGR0   A0A194PLA9   A0A212FBE7   Q4GXN6   V9IJK4   K7IRB4   D6WZ30   F4WA35   A0A026W1W9   A0A348G691   Q56FI0   A0A151JUV5   A0A1W4X2D9   A0A291L1Q1   A0A151I5V1   A0A151XH09   A0A195DL51   A0A2A3ECB2   A0A1B6E4T1   A0A1B6HZN0   A0A3L8DJN5   A0A154PJ41   A0A1B6M3M4   A0A0C9PMY3   A0A0L7LVS9   J3JTQ5   A0A161MTE3   A0A224XQT0   A0A023FAH8   A0A069DTW2   A0A1Y1LPK8   R4G8A6   N6U032   A0A109V3B6   D1M828   T1I4P1   V5I9H4   E0VST1   A0A151IG31   A0A146KMU3   A0A0A9VZ92   A0A0N0BKY0   A0A158P1B1   E2AWW1   A0A2P8ZKY5   A0A2R7VNT8   A0A2J7RP48   E2BMC7   R4WMW2   A0A0J7L6Z4   A2I419   B3NZH5   A0A026W7G7   A0A0K8TPG0   A0A1A9WFP0   A0A1B6FJU3   A0A1W4ULZ1   B4QU67   A0A3B0KCH9   B4GLH0   B4PLI8   O16797   C6SUV6   T1PHG9   A0A1D1YTM4   A0A1L8DS24   A0A1L8EHJ6   A0A1I8N656   A0A1A9XBD5   A0A1B0AZE2   A0A0M4EM74   B3LZ56   A0A1L8EH93   A0A240SX71   D3TRR8   A0A1L8DSC1   A0A1I8P770   B4NIH6   A0A0A1XQW6   W8C6G0   A0A1W7R9R0   B4JUV8   B4LZI6   A0A034WFM3   A0A2H8TV14   A0A2I9LPL7   B4KD01  

PDB

4V6W     E-value=0,     Score=1664

KEGG

692658    K02925 large subunit ribosomal protein L3e | (RefSeq) RpL3; ribosomal protein L3

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0005840   GO:0003735   GO:0006412   GO:0000027   GO:0022625   GO:0002181   GO:0005622   GO:0005634   GO:0005737   GO:0016876   GO:0043039   GO:0004651  

Subcellular location

Cytoplasm  

Length:

413

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.516329999999999

Exp number, first 60 AAs:

0.00313

Total prob of N-in:

0.03415

outside

1  -  413

 

 

Pi

162.9349

Theta

184.081933

Tajima's D

0.054359

CLR

151.844106

CSRT

0.385580720963952

Interpretation

Uncertain