SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01993
Annotation
PREDICTED:_v-src_sarcoma_(Schmidt-Ruppin_A-2)_viral_oncogene_homolog_isoform_X4_[Bombyx_mori]
Location
Bomo_Chr4(+):9459996-9500360      View in EpiBrowser
Transcription factor
bHLH
Location in the cell
Nuclear   Reliability : 4.708
 

Sequence

CDS
ATGAGCGTGACAGCGCCGGTTAAGAAGATAAGAAAAAAGTCAGACAATACGCAACAAACTCAAATTAATAAGTGCCAGAATGAGAAAGAGCGACGGAAACTTGAAAACGAAACTATAAATCAACTTGAGGAGCTTCTTGGTACTTGTCTCGCCGAAGTAAAGCAACCGGACAAGAACGGTATTGTCCGAGAGGCCACGCGTCAGATCCAGGAGGTATTGAAACGGCGACGCGAGTGTCCCAGCGAGTGTCCCCTACGATCGCCCCAGTGTCTATCACCAGTACAGGCCGGGGAGATCAGCTCAACACAGCCGCAGTTGCCCTGCACCGGATTACATTATTCTGAAGTCACAACTTTAATTGAGGCACTCAAACATTACACCAATAACCTCGGATGGGTTTTATTGGAAATTAATTCGAAAGGTGAAATAGAGTGTGTATCAGATAATATCAAGGAGTTTATTCTTCACGATAGAACAGAACTATATAGGAAATCGATATTTTCGATTTTACATGAGAAAGATCATGCGAAACTAAGACCGTTACTTAGGAACATACAATCTTTCAACTGGGACTCGGCAGATATTGATAAATTCCACTTTGTGAAAGCAAGGCTCCTCGTTAAAAATTCAAATGGGACTGACTGTGGCGTTTACGTGGAGACAGTGATACACGCTGCGCCAGTGCGCGGCTCTTCTTCGGAGGAGGCCGGCTCCGTCATGTGCGTCATCCGGCGCTGCGACGACGCGTCGGCCGTTCTTATTCCCGACGACGGCGGCCCGCCCGCCATCACCGCCAAGCAGTCCGATCATATCGTCTTCAGATTAGACTGCAATTTTAATATTTTGTCTTGTGACTTGAGTGCAGTGGACAGTATAGTAAACTCACCAGTTTCTCTTGTGGGCACTCGATATTTGGACTTGGTTGACAGTGTTGATCGTCTACGTGTTGCTGCACATCTGCTGGAAGCAGCATCAGCGCCTGCGCCGCCTGCAGTCAGTGAACCGTTTCGACTGCGCGTCACCCCCGACCATCCGTGGTTGCGTGTCAGCGCCCGATCGCGGCTGTTCAGGTCTCAGGCCACTTCTGGTGAACCTGACTTCATAATGTCAACGCACAGCGTTCTTTGTGATGAGGAGATAGATATGTTGGAATCTGAAAGCCCTCGCCCTGCGGTCGGCGGCCCGCTCATGCCCTCCGTGACCAACGGAGAGTCTTCCATGTGCGAGTCGCGGTATCGATCTCCCGTCAGTCCGGCCACGAATCCGTTTTCTATAAACGATTTCGAGTTTGAACCTTGGGCTTCTTCTCTCCTTGGTGAAATGTCAAATGAAGATTCCAAGGAACCCAAGGATGGGTCCGTGGAGGGACCGCCTTCAACCCCGCTCACGCCTCGGGCGCCTTCCACTCCTGGTGAAAGCGCTCACGTCGTACAGCCTCCTGAAGAGCCAAATCGGTTACGAACGCTGTTGAGCAAGAAGCCTAATTCGTCTTCCGAAGCAAACTCCAACTCGAACAATCGTATTCTGAAAGATTTATTGAAGCAAGAAGACGAAGAGGCGACAGGAAGCGAGACGTCGGCGCCGCACACCCCGCACACGCCGATGACACCGCACACCCCGCACACGCCCGGCGCGGCGCTCTCCCCGCTGCACTCCGCGCCGTCGCACGCGCGTCCGCAGGCGCACTTGCAGCCGCACGCCTCGCACTCCGCGGGACAGCACTCCATGCAACAGCTTCATCACAATAATTCCGACGTCCTCCTTAAGATATTAAACGATAAATCAGACGAAGATACGGAGGAAGGGAGAAGAAGCGCTTCGGACAGTAATCGCAGTATGTCCCAGCCCAGCGCGCTCCTCTCCCAGCTGTTGTCGAGCAGCAACGGCCCGGCGGGTAACGGACGCTCGCAGGACGGAAGCGACAACTACCTGGATAGGATCGCCGGTGTCAAACGCAAATTCGAAGACGCCAAAGCGATGAGCGGTAATATGAAGAGAGCGACCCCAGAGAATCAACAGGTGACGTCCAGTGCTGTATCGGTAGCGTCATCGACGGCGACGTCTACGGCCGGGAGCCCGGCGACGAGCGGCCCGGGCATGAGTCCGCTGTGCAAAAAGAACCAGATCCTGGTGTCGTTATTGGCGCGCCAGCAGCCCACGCCCACCACCCCGCTGCCGCTCCCCAACCCCAGCCTGCGCCCCTACGGACCCACCAACCGACCGCGAGCGCCGCCTCCGCCTCACCCGGCTCAGCATCATCACCACCACGCCATGCAACACCACCAGCGGCACCATTCGACGCTCTCCAACATACTCACCGGAGTCAACCATCGGGCGAGCAACGTGAACGGCGGCGGCGGCGACGGCCCGACGGCGGAGTGCTCGTCTGCGCAGAGCCACCTGCAGATGGTGCTGCAGGGCGGCGCGCGCTACCCGCCCGCCTCCGCGCCCGCGCCCCTGCACTACACCAACACCACGCCGCACCACACCTACAACAGCCAGCCGCCCTCGTCAGTTCCCAACTACAGCTTACCTAATCCTTTACGTTATTCGAAACGTCGAACTTGGAGTTAA
Protein
MSVTAPVKKIRKKSDNTQQTQINKCQNEKERRKLENETINQLEELLGTCLAEVKQPDKNGIVREATRQIQEVLKRRRECPSECPLRSPQCLSPVQAGEISSTQPQLPCTGLHYSEVTTLIEALKHYTNNLGWVLLEINSKGEIECVSDNIKEFILHDRTELYRKSIFSILHEKDHAKLRPLLRNIQSFNWDSADIDKFHFVKARLLVKNSNGTDCGVYVETVIHAAPVRGSSSEEAGSVMCVIRRCDDASAVLIPDDGGPPAITAKQSDHIVFRLDCNFNILSCDLSAVDSIVNSPVSLVGTRYLDLVDSVDRLRVAAHLLEAASAPAPPAVSEPFRLRVTPDHPWLRVSARSRLFRSQATSGEPDFIMSTHSVLCDEEIDMLESESPRPAVGGPLMPSVTNGESSMCESRYRSPVSPATNPFSINDFEFEPWASSLLGEMSNEDSKEPKDGSVEGPPSTPLTPRAPSTPGESAHVVQPPEEPNRLRTLLSKKPNSSSEANSNSNNRILKDLLKQEDEEATGSETSAPHTPHTPMTPHTPHTPGAALSPLHSAPSHARPQAHLQPHASHSAGQHSMQQLHHNNSDVLLKILNDKSDEDTEEGRRSASDSNRSMSQPSALLSQLLSSSNGPAGNGRSQDGSDNYLDRIAGVKRKFEDAKAMSGNMKRATPENQQVTSSAVSVASSTATSTAGSPATSGPGMSPLCKKNQILVSLLARQQPTPTTPLPLPNPSLRPYGPTNRPRAPPPPHPAQHHHHHAMQHHQRHHSTLSNILTGVNHRASNVNGGGGDGPTAECSSAQSHLQMVLQGGARYPPASAPAPLHYTNTTPHHTYNSQPPSSVPNYSLPNPLRYSKRRTWS

Summary

Uniprot
I4DHB4   A0A290DSG3   A0A2H1VFH3   A0A1B2INN3   A0A194PRN3   A0A194RBB0   + More
A0A212ET18   A0A2H8TQT5   A0A1B2INM9   D6WKW2   A0A2A3EJM0   A0A2S2PJ35   S6B9A5  
Pubmed
22753472    26354079    22118469    18362917    19820115   
EMBL
AB703620    BAM17304.1    KX821732    ATB19378.1    ODYU01002289    SOQ39579.1    + More
KT361880    ANZ54970.1    KQ459601    KPI93795.1    KQ460398    KPJ15113.1    AGBW02012699    OWR44591.1    GFXV01004700    MBW16505.1    KT361879    ANZ54969.1    KQ971343    EFA04027.2    KZ288225    PBC31927.1    GGMR01016798    MBY29417.1    AB762694    BAN62669.1   
Proteomes
UP000053268    UP000053240    UP000007151    UP000007266    UP000242457   
PRIDE
I4DHB4   
Pfam
PF00989   PAS        + More
PF00010   HLH
Interpro
IPR017426   Nuclear_rcpt_coactivator        + More
IPR011598   bHLH_dom       
IPR036638   HLH_DNA-bd_sf       
IPR000014   PAS       
IPR013767   PAS_fold       
IPR035965   PAS-like_dom_sf       
SUPFAM
SSF47459   SSF47459        + More
SSF55785   SSF55785       
Gene 3D
4.10.280.10    
CDD
cd00130  PAS
 cd00083  HLH
ProteinModelPortal
I4DHB4   A0A290DSG3   A0A2H1VFH3   A0A1B2INN3   A0A194PRN3   A0A194RBB0   + More
A0A212ET18   A0A2H8TQT5   A0A1B2INM9   D6WKW2   A0A2A3EJM0   A0A2S2PJ35   S6B9A5  

Ontologies

KEGG
101741527    K11255 nuclear receptor coactivator 2 | (RefSeq) SRC; v-src sarcoma (Schmidt-Ruppin A-2) viral oncog
GO
GO:0006355   GO:0046983   GO:0030374   GO:0005634   GO:0045944   GO:0032870   GO:0035257   GO:0016922   GO:0004743   GO:0006096   GO:0030955   GO:0003824   GO:0005737   GO:0016876   GO:0043039   GO:0004651  
PANTHER
PTHR10684  

Topology

Subcellular location
Nucleus  
Length:
857
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
7e-05
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00009
outside
1  -  857
 
 

Population Genetic Test Statistics

Pi
222.384827
Theta
176.682046
Tajima's D
0.653931
CLR
0.528464
CSRT
0.554172291385431
Interpretation
Uncertain
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